RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 OR9G9P0C7N8 305 aa9.49□□□□□ -0.89
PTPRF-203ENST00000372407 FOXG1P55316 489 aaPredicted RBP9.49□□□□□ -0.89
PTPRF-203ENST00000372407 FOXF2Q12947 444 aa9.49□□□□□ -0.89
PTPRF-203ENST00000372407 CLEC19AQ6UXS0 136 aa9.49□□□□□ -0.89
PTPRF-203ENST00000372407 MTURNQ8N3F0 131 aa9.49□□□□□ -0.89
PTPRF-203ENST00000372407 HIST1H2BLQ99880 126 aa9.49□□□□□ -0.89
PTPRF-203ENST00000372407 A0A1B0GWB2 263 aa9.49□□□□□ -0.89
PTPRF-203ENST00000372407 NPFFO15130 113 aa9.49□□□□□ -0.89
PTPRF-203ENST00000372407 GCSAMLQ5JQS6 135 aa9.49□□□□□ -0.89
PTPRF-203ENST00000372407 C17orf82Q86X59 251 aaPredicted RBP9.49□□□□□ -0.89
PTPRF-203ENST00000372407 DMRTA2Q96SC8 542 aa9.49□□□□□ -0.89
PTPRF-203ENST00000372407 SLC50A1Q9BRV3 221 aa9.49□□□□□ -0.89
PTPRF-203ENST00000372407 SSBP4Q9BWG4 385 aaPredicted RBP9.49□□□□□ -0.89
PTPRF-203ENST00000372407 IGKV3OR2-268A0A0C4DH90 116 aa9.49□□□□□ -0.89
PTPRF-203ENST00000372407 SRRM5B3KS81 715 aa9.49□□□□□ -0.89
PTPRF-203ENST00000372407 STAG3L3P0CL85 134 aa9.49□□□□□ -0.89
PTPRF-203ENST00000372407 GNG5P63218 68 aa9.49□□□□□ -0.89
PTPRF-203ENST00000372407 GNB1LQ9BYB4 327 aa9.49□□□□□ -0.89
PTPRF-203ENST00000372407 RPUSD1Q9UJJ7 312 aaKnown RBP9.49□□□□□ -0.89
PTPRF-203ENST00000372407 ZNF407Q9C0G0 2248 aa9.49□□□□□ -0.89
PTPRF-203ENST00000372407 HAX1O00165 279 aa9.49□□□□□ -0.89
PTPRF-203ENST00000372407 TRAV9-2A0A087WT02 112 aa9.48□□□□□ -0.89
PTPRF-203ENST00000372407 PPBPP02775 128 aa9.48□□□□□ -0.89
PTPRF-203ENST00000372407 LINC00614P0C842 121 aa9.48□□□□□ -0.89
PTPRF-203ENST00000372407 NMSQ5H8A3 153 aa9.48□□□□□ -0.89
PTPRF-203ENST00000372407 TREML4Q6UXN2 200 aa9.48□□□□□ -0.89
PTPRF-203ENST00000372407 ZCCHC24Q8N2G6 241 aaKnown RBP9.48□□□□□ -0.89
PTPRF-203ENST00000372407 RPP25LQ8N5L8 163 aaKnown RBP9.48□□□□□ -0.89
PTPRF-203ENST00000372407 GGTLC1Q9BX51 225 aa9.48□□□□□ -0.89
PTPRF-203ENST00000372407 VSIRQ9H7M9 311 aa9.48□□□□□ -0.89
PTPRF-203ENST00000372407 JKAMPQ9P055 326 aa9.48□□□□□ -0.89
PTPRF-203ENST00000372407 PSG8Q9UQ74 426 aa9.48□□□□□ -0.89
PTPRF-203ENST00000372407 SPCS1Q9Y6A9 102 aa9.48□□□□□ -0.89
PTPRF-203ENST00000372407 NTN3O00634 580 aaPredicted RBP9.48□□□□□ -0.89
PTPRF-203ENST00000372407 EMP1P54849 157 aa9.48□□□□□ -0.89
PTPRF-203ENST00000372407 SAMD13Q5VXD3 122 aa9.48□□□□□ -0.89
PTPRF-203ENST00000372407 TMEM50AO95807 157 aa9.48□□□□□ -0.89
PTPRF-203ENST00000372407 PINLYPA6NC86 204 aa9.47□□□□□ -0.89
PTPRF-203ENST00000372407 TFF1P04155 84 aa9.47□□□□□ -0.89
PTPRF-203ENST00000372407 GGNQ86UU5 652 aa9.47□□□□□ -0.89
PTPRF-203ENST00000372407 OR13C6PQ8NH95 151 aa9.47□□□□□ -0.89
PTPRF-203ENST00000372407 C5orf30Q96GV9 206 aa9.47□□□□□ -0.89
PTPRF-203ENST00000372407 ZNF257Q9Y2Q1 563 aa9.47□□□□□ -0.89
PTPRF-203ENST00000372407 IGKV1-27A0A075B6S5 117 aa9.47□□□□□ -0.89
PTPRF-203ENST00000372407 APOMO95445 188 aa9.47□□□□□ -0.89
PTPRF-203ENST00000372407 TIMP3P35625 211 aa9.47□□□□□ -0.89
PTPRF-203ENST00000372407 NBL1P41271 181 aa9.47□□□□□ -0.89
PTPRF-203ENST00000372407 NUDT11Q96G61 164 aa9.47□□□□□ -0.89
PTPRF-203ENST00000372407 KLHDC3Q9BQ90 382 aa9.47□□□□□ -0.89
PTPRF-203ENST00000372407 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP9.47□□□□□ -0.89
PTPRF-203ENST00000372407 A0A1B0GW64 132 aa9.47□□□□□ -0.89
PTPRF-203ENST00000372407 RNASE1P07998 156 aaKnown RBP9.47□□□□□ -0.89
PTPRF-203ENST00000372407 PRSS33Q8NF86 280 aa9.47□□□□□ -0.89
PTPRF-203ENST00000372407 RNASE6Q93091 150 aaKnown RBP9.47□□□□□ -0.89
PTPRF-203ENST00000372407 CCL19Q99731 98 aa9.47□□□□□ -0.89
PTPRF-203ENST00000372407 IGHV1-18A0A0C4DH31 117 aa9.47□□□□□ -0.89
PTPRF-203ENST00000372407 PSPNO60542 156 aa9.47□□□□□ -0.89
PTPRF-203ENST00000372407 HBDP02042 147 aa9.47□□□□□ -0.89
PTPRF-203ENST00000372407 HIST3H2BBQ8N257 126 aa9.47□□□□□ -0.89
PTPRF-203ENST00000372407 TSKUQ8WUA8 353 aa9.47□□□□□ -0.89
PTPRF-203ENST00000372407 TNFRSF14Q92956 283 aa9.47□□□□□ -0.89
PTPRF-203ENST00000372407 C7orf69Q9H7B7 122 aa9.47□□□□□ -0.89
PTPRF-203ENST00000372407 NXT2Q9NPJ8 142 aaKnown RBP9.47□□□□□ -0.89
PTPRF-203ENST00000372407 FANCMQ8IYD8 2048 aa9.46□□□□□ -0.89
PTPRF-203ENST00000372407 PAX1P15863 534 aa9.46□□□□□ -0.89
PTPRF-203ENST00000372407 C1QL4Q86Z23 238 aa9.46□□□□□ -0.89
PTPRF-203ENST00000372407 CXCL1P09341 107 aa9.46□□□□□ -0.89
PTPRF-203ENST00000372407 FOXL1Q12952 345 aa9.46□□□□□ -0.89
PTPRF-203ENST00000372407 TMEM14EPQ6UXP3 125 aa9.46□□□□□ -0.89
PTPRF-203ENST00000372407 OR10J3Q5JRS4 329 aa9.46□□□□□ -0.9
PTPRF-203ENST00000372407 FAM71F2Q6NXP2 309 aa9.46□□□□□ -0.9
PTPRF-203ENST00000372407 LINC00469Q8N7U9 141 aa9.46□□□□□ -0.9
PTPRF-203ENST00000372407 FAM168AQ92567 244 aa9.46□□□□□ -0.9
PTPRF-203ENST00000372407 PLCE1Q9P212 2302 aa9.46□□□□□ -0.9
PTPRF-203ENST00000372407 IGHV3-11P01762 117 aa9.46□□□□□ -0.9
PTPRF-203ENST00000372407 REG4Q9BYZ8 158 aa9.46□□□□□ -0.9
PTPRF-203ENST00000372407 SPRR3Q9UBC9 169 aa9.46□□□□□ -0.9
PTPRF-203ENST00000372407 NYNRINQ9P2P1 1898 aaKnown RBP9.46□□□□□ -0.9
PTPRF-203ENST00000372407 IGKV1-5P01602 117 aa9.45□□□□□ -0.9
PTPRF-203ENST00000372407 IGHV1-46P01743 117 aa9.45□□□□□ -0.9
PTPRF-203ENST00000372407 AMBPP02760 352 aa9.45□□□□□ -0.9
PTPRF-203ENST00000372407 LINC01551Q86U37 167 aa9.45□□□□□ -0.9
PTPRF-203ENST00000372407 LEPP41159 167 aa9.45□□□□□ -0.9
PTPRF-203ENST00000372407 TMEM42Q69YG0 159 aa9.45□□□□□ -0.9
PTPRF-203ENST00000372407 ZNF418Q8TF45 676 aaPredicted RBP9.45□□□□□ -0.9
PTPRF-203ENST00000372407 C2orf88Q9BSF0 95 aa9.45□□□□□ -0.9
PTPRF-203ENST00000372407 PLXNA4Q9HCM2 1894 aa9.45□□□□□ -0.9
PTPRF-203ENST00000372407 H3BRM9 83 aa9.45□□□□□ -0.9
PTPRF-203ENST00000372407 ATP5L2Q7Z4Y8 100 aa9.45□□□□□ -0.9
PTPRF-203ENST00000372407 COQ2Q96H96 371 aa9.45□□□□□ -0.9
PTPRF-203ENST00000372407 TMEM101Q96IK0 257 aa9.45□□□□□ -0.9
PTPRF-203ENST00000372407 H3BUT2 72 aa9.44□□□□□ -0.9
PTPRF-203ENST00000372407 RHOGP84095 191 aa9.44□□□□□ -0.9
PTPRF-203ENST00000372407 GLRX5Q86SX6 157 aa9.44□□□□□ -0.9
PTPRF-203ENST00000372407 OR10W1Q8NGF6 305 aa9.44□□□□□ -0.9
PTPRF-203ENST00000372407 OR4X2Q8NGF9 303 aa9.44□□□□□ -0.9
PTPRF-203ENST00000372407 AGMATQ9BSE5 352 aa9.44□□□□□ -0.9
PTPRF-203ENST00000372407 TIMM23O14925 209 aa9.44□□□□□ -0.9
PTPRF-203ENST00000372407 CA1P00915 261 aaPredicted RBP9.44□□□□□ -0.9
PTPRF-203ENST00000372407 CD24P25063 80 aa9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 82.8 ms