RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 TNFRSF19Q9NS68 423 aa8.3□□□□□ -1.08
LIMA1-201ENST00000341247 IGSF10Q6WRI0 2623 aa8.3□□□□□ -1.08
LIMA1-201ENST00000341247 IGKV1D-37A0A075B6S9 117 aa8.29□□□□□ -1.08
LIMA1-201ENST00000341247 IGLC7A0M8Q6 106 aa8.29□□□□□ -1.08
LIMA1-201ENST00000341247 ZNF705GA8MUZ8 300 aaPredicted RBP8.29□□□□□ -1.08
LIMA1-201ENST00000341247 KLRB1Q12918 225 aa8.29□□□□□ -1.08
LIMA1-201ENST00000341247 PRR27Q6MZM9 219 aa8.29□□□□□ -1.08
LIMA1-201ENST00000341247 LINC00305Q7Z4B0 112 aa8.29□□□□□ -1.08
LIMA1-201ENST00000341247 TMEM256Q8N2U0 113 aa8.29□□□□□ -1.08
LIMA1-201ENST00000341247 CACNG8Q8WXS5 425 aa8.29□□□□□ -1.08
LIMA1-201ENST00000341247 TXNDC17Q9BRA2 123 aa8.29□□□□□ -1.08
LIMA1-201ENST00000341247 PAXXQ9BUH6 204 aa8.29□□□□□ -1.08
LIMA1-201ENST00000341247 NDUFS7O75251 213 aa8.29□□□□□ -1.08
LIMA1-201ENST00000341247 CNIH1O95406 144 aa8.29□□□□□ -1.08
LIMA1-201ENST00000341247 IGHV2-70P01814 119 aa8.29□□□□□ -1.08
LIMA1-201ENST00000341247 IER3P46695 156 aa8.29□□□□□ -1.08
LIMA1-201ENST00000341247 OR8B3Q8NGG8 313 aa8.29□□□□□ -1.08
LIMA1-201ENST00000341247 FAM167A-AS1Q96KT0 104 aa8.29□□□□□ -1.08
LIMA1-201ENST00000341247 OR8B2Q96RD0 313 aa8.29□□□□□ -1.08
LIMA1-201ENST00000341247 SSBP3Q9BWW4 388 aaPredicted RBP8.29□□□□□ -1.08
LIMA1-201ENST00000341247 SIGLEC9Q9Y336 463 aa8.29□□□□□ -1.08
LIMA1-201ENST00000341247 SPG11Q96JI7 2443 aa8.29□□□□□ -1.08
LIMA1-201ENST00000341247 ZNF469Q96JG9 3925 aaPredicted RBP8.29□□□□□ -1.08
LIMA1-201ENST00000341247 FNDC10F2Z333 226 aa8.29□□□□□ -1.08
LIMA1-201ENST00000341247 IGLV1-47P01700 117 aa8.29□□□□□ -1.08
LIMA1-201ENST00000341247 ADMP35318 185 aa8.29□□□□□ -1.08
LIMA1-201ENST00000341247 RAB4BP61018 213 aa8.29□□□□□ -1.08
LIMA1-201ENST00000341247 S100A12P80511 92 aa8.29□□□□□ -1.08
LIMA1-201ENST00000341247 HES1Q14469 280 aa8.29□□□□□ -1.08
LIMA1-201ENST00000341247 SSX8Q7RTT4 187 aa8.29□□□□□ -1.08
LIMA1-201ENST00000341247 KIR3DL3Q8N743 410 aa8.29□□□□□ -1.08
LIMA1-201ENST00000341247 TCRBV4S1A1TA0A5B7 111 aa8.28□□□□□ -1.08
LIMA1-201ENST00000341247 TIMM23O14925 209 aa8.28□□□□□ -1.08
LIMA1-201ENST00000341247 NUPR1O60356 82 aa8.28□□□□□ -1.08
LIMA1-201ENST00000341247 GPX4P36969 197 aaPredicted RBP8.28□□□□□ -1.08
LIMA1-201ENST00000341247 CDKN1AP38936 164 aa8.28□□□□□ -1.08
LIMA1-201ENST00000341247 LGALS7P47929 136 aa8.28□□□□□ -1.08
LIMA1-201ENST00000341247 CNN1P51911 297 aaKnown RBP8.28□□□□□ -1.08
LIMA1-201ENST00000341247 MMDQ15546 238 aa8.28□□□□□ -1.08
LIMA1-201ENST00000341247 TIGITQ495A1 244 aa8.28□□□□□ -1.08
LIMA1-201ENST00000341247 KIAA1644Q3SXP7 199 aa8.28□□□□□ -1.08
LIMA1-201ENST00000341247 PPP1R27Q86WC6 154 aa8.28□□□□□ -1.08
LIMA1-201ENST00000341247 MMD2Q8IY49 270 aa8.28□□□□□ -1.08
LIMA1-201ENST00000341247 A0A087X0M5 115 aa8.28□□□□□ -1.08
LIMA1-201ENST00000341247 A0A1B0GX30 115 aa8.28□□□□□ -1.08
LIMA1-201ENST00000341247 CD33P20138 364 aa8.28□□□□□ -1.08
LIMA1-201ENST00000341247 RPL15P61313 204 aaKnown RBP8.28□□□□□ -1.08
LIMA1-201ENST00000341247 KLF17Q5JT82 389 aaPredicted RBP8.28□□□□□ -1.08
LIMA1-201ENST00000341247 MRPL41Q8IXM3 137 aaKnown RBP8.28□□□□□ -1.08
LIMA1-201ENST00000341247 OR4A5Q8NH83 315 aa8.28□□□□□ -1.08
LIMA1-201ENST00000341247 ZNF596Q8TC21 504 aa8.28□□□□□ -1.08
LIMA1-201ENST00000341247 PSMB11A5LHX3 300 aa8.27□□□□□ -1.09
LIMA1-201ENST00000341247 CD99P14209 185 aa8.27□□□□□ -1.09
LIMA1-201ENST00000341247 ZNF137PP52743 207 aa8.27□□□□□ -1.09
LIMA1-201ENST00000341247 LCN2P80188 198 aa8.27□□□□□ -1.09
LIMA1-201ENST00000341247 FBLN7Q53RD9 439 aa8.27□□□□□ -1.09
LIMA1-201ENST00000341247 MRPL54Q6P161 138 aaKnown RBP8.27□□□□□ -1.09
LIMA1-201ENST00000341247 OR1L6Q8NGR2 347 aa8.27□□□□□ -1.09
LIMA1-201ENST00000341247 RNASEH2CQ8TDP1 164 aaKnown RBP8.27□□□□□ -1.09
LIMA1-201ENST00000341247 C11orf52Q96A22 123 aa8.27□□□□□ -1.09
LIMA1-201ENST00000341247 FOXL1Q12952 345 aa8.27□□□□□ -1.09
LIMA1-201ENST00000341247 SRSF12Q8WXF0 261 aaKnown RBP8.27□□□□□ -1.09
LIMA1-201ENST00000341247 RAB1BQ9H0U4 201 aa8.27□□□□□ -1.09
LIMA1-201ENST00000341247 IL36BQ9NZH7 164 aa8.27□□□□□ -1.09
LIMA1-201ENST00000341247 CUBNO60494 3623 aa8.27□□□□□ -1.09
LIMA1-201ENST00000341247 RBP4P02753 201 aa8.27□□□□□ -1.09
LIMA1-201ENST00000341247 BPIFB3P59826 476 aa8.27□□□□□ -1.09
LIMA1-201ENST00000341247 LYZP61626 148 aa8.27□□□□□ -1.09
LIMA1-201ENST00000341247 SSX2Q16385 188 aa8.27□□□□□ -1.09
LIMA1-201ENST00000341247 RPEL1Q2QD12 228 aa8.27□□□□□ -1.09
LIMA1-201ENST00000341247 FAM71F2Q6NXP2 309 aa8.27□□□□□ -1.09
LIMA1-201ENST00000341247 ST6GALNAC3Q8NDV1 305 aa8.27□□□□□ -1.09
LIMA1-201ENST00000341247 AMMECR1Q9Y4X0 333 aaPredicted RBP8.27□□□□□ -1.09
LIMA1-201ENST00000341247 SNURFLB1AK76 121 aa8.26□□□□□ -1.09
LIMA1-201ENST00000341247 TYMSP04818 313 aa8.26□□□□□ -1.09
LIMA1-201ENST00000341247 V9GYV3 84 aa8.26□□□□□ -1.09
LIMA1-201ENST00000341247 FBN2P35556 2912 aa8.26□□□□□ -1.09
LIMA1-201ENST00000341247 LIPFP07098 398 aa8.26□□□□□ -1.09
LIMA1-201ENST00000341247 COMPP49747 757 aaPredicted RBP8.26□□□□□ -1.09
LIMA1-201ENST00000341247 ATP5IP56385 69 aaPredicted RBP8.26□□□□□ -1.09
LIMA1-201ENST00000341247 C8orf31Q8N9H6 132 aa8.26□□□□□ -1.09
LIMA1-201ENST00000341247 TEX45Q8NA69 505 aa8.26□□□□□ -1.09
LIMA1-201ENST00000341247 FAM168AQ92567 244 aa8.26□□□□□ -1.09
LIMA1-201ENST00000341247 DMRT1Q9Y5R6 373 aa8.26□□□□□ -1.09
LIMA1-201ENST00000341247 C9JCJ5 164 aa8.26□□□□□ -1.09
LIMA1-201ENST00000341247 F2Z2F3 143 aa8.26□□□□□ -1.09
LIMA1-201ENST00000341247 OR1L4Q8NGR5 311 aa8.26□□□□□ -1.09
LIMA1-201ENST00000341247 C22orf15Q8WYQ4 148 aa8.26□□□□□ -1.09
LIMA1-201ENST00000341247 MRPL18Q9H0U6 180 aaKnown RBP8.26□□□□□ -1.09
LIMA1-201ENST00000341247 PRDM13Q9H4Q3 707 aa8.26□□□□□ -1.09
LIMA1-201ENST00000341247 A0A1W2PPR1 153 aa8.25□□□□□ -1.09
LIMA1-201ENST00000341247 ISLRO14498 428 aa8.25□□□□□ -1.09
LIMA1-201ENST00000341247 SLC25A5P05141 298 aaKnown RBP8.25□□□□□ -1.09
LIMA1-201ENST00000341247 IBA57Q5T440 356 aaKnown RBP8.25□□□□□ -1.09
LIMA1-201ENST00000341247 TIMD4Q96H15 378 aa8.25□□□□□ -1.09
LIMA1-201ENST00000341247 ASCL2Q99929 193 aa8.25□□□□□ -1.09
LIMA1-201ENST00000341247 MRPL32Q9BYC8 188 aaKnown RBP8.25□□□□□ -1.09
LIMA1-201ENST00000341247 WNT10AQ9GZT5 417 aa8.25□□□□□ -1.09
LIMA1-201ENST00000341247 A0A1W2PRE2 83 aa8.25□□□□□ -1.09
LIMA1-201ENST00000341247 PGPA6NDG6 321 aa8.25□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms