RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 CCSO14618 274 aa11.97□□□□□ -0.49
CLN3-201ENST00000333496 MT-CO2P00403 227 aa11.97□□□□□ -0.49
CLN3-201ENST00000333496 IGHV3-48P01763 117 aa11.97□□□□□ -0.49
CLN3-201ENST00000333496 RLN2P04090 185 aa11.97□□□□□ -0.49
CLN3-201ENST00000333496 CBLN1P23435 193 aa11.97□□□□□ -0.49
CLN3-201ENST00000333496 DEFB114Q30KQ6 69 aa11.97□□□□□ -0.49
CLN3-201ENST00000333496 CD300EQ496F6 205 aaPredicted RBP11.97□□□□□ -0.49
CLN3-201ENST00000333496 PVRIGQ6DKI7 326 aa11.97□□□□□ -0.49
CLN3-201ENST00000333496 OR52E5Q8NH55 327 aa11.97□□□□□ -0.49
CLN3-201ENST00000333496 RNF222A6NCQ9 220 aa11.96□□□□□ -0.5
CLN3-201ENST00000333496 RNASE2P10153 161 aaKnown RBP11.96□□□□□ -0.5
CLN3-201ENST00000333496 SPCS3P61009 180 aa11.96□□□□□ -0.5
CLN3-201ENST00000333496 TM4SF20Q53R12 229 aa11.96□□□□□ -0.5
CLN3-201ENST00000333496 NMSQ5H8A3 153 aa11.96□□□□□ -0.5
CLN3-201ENST00000333496 LYZL2Q7Z4W2 148 aa11.96□□□□□ -0.5
CLN3-201ENST00000333496 UBAC2Q8NBM4 344 aa11.96□□□□□ -0.5
CLN3-201ENST00000333496 SELENOKQ9Y6D0 94 aa11.96□□□□□ -0.5
CLN3-201ENST00000333496 HUWE1Q7Z6Z7 4374 aaKnown RBP11.96□□□□□ -0.5
CLN3-201ENST00000333496 FAM25EA8MYX2 175 aa11.95□□□□□ -0.5
CLN3-201ENST00000333496 CTSGP08311 255 aa11.95□□□□□ -0.5
CLN3-201ENST00000333496 FCGR2BP31994 310 aaPredicted RBP11.95□□□□□ -0.5
CLN3-201ENST00000333496 SNCAP37840 140 aa11.95□□□□□ -0.5
CLN3-201ENST00000333496 HOXA1P49639 335 aaPredicted RBP11.95□□□□□ -0.5
CLN3-201ENST00000333496 BSXQ3C1V8 233 aa11.95□□□□□ -0.5
CLN3-201ENST00000333496 LCN12Q6JVE5 192 aa11.95□□□□□ -0.5
CLN3-201ENST00000333496 SPSB3Q6PJ21 355 aa11.95□□□□□ -0.5
CLN3-201ENST00000333496 OR2K2Q8NGT1 345 aa11.95□□□□□ -0.5
CLN3-201ENST00000333496 PINX1Q96BK5 328 aaKnown RBP11.95□□□□□ -0.5
CLN3-201ENST00000333496 C5orf51A6NDU8 294 aa11.94□□□□□ -0.5
CLN3-201ENST00000333496 ZNF785A8K8V0 405 aa11.94□□□□□ -0.5
CLN3-201ENST00000333496 ADAP1O75689 374 aa11.94□□□□□ -0.5
CLN3-201ENST00000333496 PET100P0DJ07 73 aa11.94□□□□□ -0.5
CLN3-201ENST00000333496 MFAP4P55083 255 aa11.94□□□□□ -0.5
CLN3-201ENST00000333496 LRRC37A5PQ49AS3 106 aa11.94□□□□□ -0.5
CLN3-201ENST00000333496 Q56UQ5 140 aa11.94□□□□□ -0.5
CLN3-201ENST00000333496 LGI3Q8N145 548 aa11.94□□□□□ -0.5
CLN3-201ENST00000333496 LRTM2Q8N967 370 aa11.94□□□□□ -0.5
CLN3-201ENST00000333496 STOML3Q8TAV4 291 aa11.94□□□□□ -0.5
CLN3-201ENST00000333496 TMEM190Q8WZ59 177 aa11.94□□□□□ -0.5
CLN3-201ENST00000333496 ARPC5LQ9BPX5 153 aa11.94□□□□□ -0.5
CLN3-201ENST00000333496 ZNF471Q9BX82 626 aaPredicted RBP11.94□□□□□ -0.5
CLN3-201ENST00000333496 MLXQ9UH92 298 aa11.94□□□□□ -0.5
CLN3-201ENST00000333496 NXPH3O95157 252 aa11.93□□□□□ -0.5
CLN3-201ENST00000333496 HOXB5P09067 269 aa11.93□□□□□ -0.5
CLN3-201ENST00000333496 C8orf88P0DMB2 117 aa11.93□□□□□ -0.5
CLN3-201ENST00000333496 SRPXP78539 464 aa11.93□□□□□ -0.5
CLN3-201ENST00000333496 DYNLRB2Q8TF09 96 aa11.93□□□□□ -0.5
CLN3-201ENST00000333496 LINC00052Q96N35 136 aa11.93□□□□□ -0.5
CLN3-201ENST00000333496 TXN2Q99757 166 aa11.93□□□□□ -0.5
CLN3-201ENST00000333496 ENY2Q9NPA8 101 aa11.93□□□□□ -0.5
CLN3-201ENST00000333496 MBD2Q9UBB5 411 aa11.93□□□□□ -0.5
CLN3-201ENST00000333496 NDUFA4O00483 81 aa11.93□□□□□ -0.5
CLN3-201ENST00000333496 ELLP55199 621 aaPredicted RBP11.93□□□□□ -0.5
CLN3-201ENST00000333496 MLANAQ16655 118 aa11.93□□□□□ -0.5
CLN3-201ENST00000333496 ASCL2Q99929 193 aa11.93□□□□□ -0.5
CLN3-201ENST00000333496 FNDC4Q9H6D8 234 aaPredicted RBP11.93□□□□□ -0.5
CLN3-201ENST00000333496 TECRQ9NZ01 308 aaKnown RBP11.93□□□□□ -0.5
CLN3-201ENST00000333496 IGHV3OR16-8A0A075B7F1 116 aa11.92□□□□□ -0.5
CLN3-201ENST00000333496 IFNA21P01568 189 aa11.92□□□□□ -0.5
CLN3-201ENST00000333496 FRMD6-AS1P0C7T7 363 aa11.92□□□□□ -0.5
CLN3-201ENST00000333496 LYL1P12980 280 aa11.92□□□□□ -0.5
CLN3-201ENST00000333496 TPT1P13693 172 aaKnown RBP11.92□□□□□ -0.5
CLN3-201ENST00000333496 SUB1P53999 127 aaKnown RBP eCLIP11.92□□□□□ -0.5
CLN3-201ENST00000333496 GAR1Q9NY12 217 aaKnown RBP11.92□□□□□ -0.5
CLN3-201ENST00000333496 MRPL36Q9P0J6 103 aaKnown RBP11.92□□□□□ -0.5
CLN3-201ENST00000333496 UFC1Q9Y3C8 167 aa11.92□□□□□ -0.5
CLN3-201ENST00000333496 MPTX1A8MV57 137 aa11.91□□□□□ -0.5
CLN3-201ENST00000333496 IGHV4-30-4P0DP06 118 aa11.91□□□□□ -0.5
CLN3-201ENST00000333496 SMCO1Q147U7 214 aa11.91□□□□□ -0.5
CLN3-201ENST00000333496 GGNBP1Q5YKI7 109 aa11.91□□□□□ -0.5
CLN3-201ENST00000333496 PRSS54Q6PEW0 395 aa11.91□□□□□ -0.5
CLN3-201ENST00000333496 BTNL8Q6UX41 500 aa11.91□□□□□ -0.5
CLN3-201ENST00000333496 SBSPONQ8IVN8 264 aa11.91□□□□□ -0.5
CLN3-201ENST00000333496 TMEM61Q8N0U2 210 aa11.91□□□□□ -0.5
CLN3-201ENST00000333496 TMEM170AQ8WVE7 144 aa11.91□□□□□ -0.5
CLN3-201ENST00000333496 OR10C1Q96KK4 312 aa11.91□□□□□ -0.5
CLN3-201ENST00000333496 C2orf50Q96LR7 162 aa11.91□□□□□ -0.5
CLN3-201ENST00000333496 HEYLQ9NQ87 328 aaPredicted RBP11.91□□□□□ -0.5
CLN3-201ENST00000333496 MRPL27Q9P0M9 148 aaKnown RBP11.91□□□□□ -0.5
CLN3-201ENST00000333496 HSPB7Q9UBY9 170 aa11.91□□□□□ -0.5
CLN3-201ENST00000333496 DUXBA0A1W2PPF3 345 aa11.9□□□□□ -0.5
CLN3-201ENST00000333496 CEBPZOSA8MTT3 80 aa11.9□□□□□ -0.5
CLN3-201ENST00000333496 A8MZ25 164 aa11.9□□□□□ -0.5
CLN3-201ENST00000333496 CORTO00230 105 aa11.9□□□□□ -0.5
CLN3-201ENST00000333496 NUPL2O15504 423 aaKnown RBP11.9□□□□□ -0.5
CLN3-201ENST00000333496 GNG7O60262 68 aa11.9□□□□□ -0.5
CLN3-201ENST00000333496 SCO1O75880 301 aa11.9□□□□□ -0.5
CLN3-201ENST00000333496 TNFRSF9Q07011 255 aa11.9□□□□□ -0.5
CLN3-201ENST00000333496 UQCC3Q6UW78 93 aa11.9□□□□□ -0.5
CLN3-201ENST00000333496 MARC2Q969Z3 335 aa11.9□□□□□ -0.5
CLN3-201ENST00000333496 DAZ1Q9NQZ3 744 aaKnown RBP11.9□□□□□ -0.5
CLN3-201ENST00000333496 C19orf73Q9NVV2 129 aa11.9□□□□□ -0.5
CLN3-201ENST00000333496 A0A1B0GU03 582 aa11.89□□□□□ -0.51
CLN3-201ENST00000333496 ZNF207O43670 478 aaKnown RBP11.89□□□□□ -0.51
CLN3-201ENST00000333496 PITX3O75364 302 aa11.89□□□□□ -0.51
CLN3-201ENST00000333496 CD7P09564 240 aa11.89□□□□□ -0.51
CLN3-201ENST00000333496 C2orf83Q53S99 150 aa11.89□□□□□ -0.51
CLN3-201ENST00000333496 GTSCR1Q86UQ5 136 aa11.89□□□□□ -0.51
CLN3-201ENST00000333496 C20orf24Q9BUV8 137 aa11.89□□□□□ -0.51
CLN3-201ENST00000333496 TMED3Q9Y3Q3 217 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 66.4 ms