RNA–Protein interactions for RNA: ENST00000330334.7

HDDC3-201, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,047 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-201ENST00000330334 CEBPZOSA8MTT3 80 aa13.04□□□□□ -0.32
HDDC3-201ENST00000330334 IGLC1P0CG04 106 aa13.04□□□□□ -0.32
HDDC3-201ENST00000330334 CCR6P51684 374 aa13.04□□□□□ -0.32
HDDC3-201ENST00000330334 ATP5IP56385 69 aaPredicted RBP13.04□□□□□ -0.32
HDDC3-201ENST00000330334 RPL11P62913 178 aaKnown RBP13.04□□□□□ -0.32
HDDC3-201ENST00000330334 SRPXP78539 464 aa13.04□□□□□ -0.32
HDDC3-201ENST00000330334 MCFD2Q8NI22 146 aa13.04□□□□□ -0.32
HDDC3-201ENST00000330334 GRAMD2BQ96HH9 432 aa13.04□□□□□ -0.32
HDDC3-201ENST00000330334 NARS2Q96I59 477 aaKnown RBP13.04□□□□□ -0.32
HDDC3-201ENST00000330334 MCUBQ9NWR8 336 aa13.04□□□□□ -0.32
HDDC3-201ENST00000330334 SHPKQ9UHJ6 478 aa13.04□□□□□ -0.32
HDDC3-201ENST00000330334 U3KQ87 197 aa13.04□□□□□ -0.32
HDDC3-201ENST00000330334 U3KQE9 123 aa13.04□□□□□ -0.32
HDDC3-201ENST00000330334 IGHV3-66A0A0C4DH42 116 aa13.03□□□□□ -0.32
HDDC3-201ENST00000330334 SUPT4H1P63272 117 aaKnown RBP13.03□□□□□ -0.32
HDDC3-201ENST00000330334 EWSR1Q01844 656 aaKnown RBP eCLIP13.03□□□□□ -0.32
HDDC3-201ENST00000330334 TIGITQ495A1 244 aa13.03□□□□□ -0.32
HDDC3-201ENST00000330334 Q8WTZ3 238 aa13.03□□□□□ -0.32
HDDC3-201ENST00000330334 TMEM170AQ8WVE7 144 aa13.03□□□□□ -0.32
HDDC3-201ENST00000330334 DEDD2Q8WXF8 326 aa13.03□□□□□ -0.32
HDDC3-201ENST00000330334 HSPB7Q9UBY9 170 aa13.03□□□□□ -0.32
HDDC3-201ENST00000330334 CXorf65A6NEN9 183 aa13.02□□□□□ -0.33
HDDC3-201ENST00000330334 K7EQG2 157 aa13.02□□□□□ -0.33
HDDC3-201ENST00000330334 ANXA3P12429 323 aa13.02□□□□□ -0.33
HDDC3-201ENST00000330334 NPY1RP25929 384 aa13.02□□□□□ -0.33
HDDC3-201ENST00000330334 OR10J1P30954 320 aa13.02□□□□□ -0.33
HDDC3-201ENST00000330334 FAUP35544 74 aaKnown RBP13.02□□□□□ -0.33
HDDC3-201ENST00000330334 P2RY1P47900 373 aa13.02□□□□□ -0.33
HDDC3-201ENST00000330334 RND2P52198 227 aa13.02□□□□□ -0.33
HDDC3-201ENST00000330334 DEFB131AP59861 70 aa13.02□□□□□ -0.33
HDDC3-201ENST00000330334 SMCO1Q147U7 214 aa13.02□□□□□ -0.33
HDDC3-201ENST00000330334 CEMP1Q6PRD7 247 aaPredicted RBP13.02□□□□□ -0.33
HDDC3-201ENST00000330334 LGI3Q8N145 548 aa13.02□□□□□ -0.33
HDDC3-201ENST00000330334 HYDINQ4G0P3 5121 aa13.02□□□□□ -0.33
HDDC3-201ENST00000330334 AKR1C4P17516 323 aa13.01□□□□□ -0.33
HDDC3-201ENST00000330334 EIF2B2P49770 351 aaKnown RBP13.01□□□□□ -0.33
HDDC3-201ENST00000330334 AP2S1P53680 142 aaPredicted RBP13.01□□□□□ -0.33
HDDC3-201ENST00000330334 AP3S2P59780 193 aa13.01□□□□□ -0.33
HDDC3-201ENST00000330334 KLF9Q13886 244 aaPredicted RBP13.01□□□□□ -0.33
HDDC3-201ENST00000330334 LYZL2Q7Z4W2 148 aa13.01□□□□□ -0.33
HDDC3-201ENST00000330334 DCANP1Q8TF63 244 aa13.01□□□□□ -0.33
HDDC3-201ENST00000330334 RARRES2Q99969 163 aa13.01□□□□□ -0.33
HDDC3-201ENST00000330334 ALMS1Q8TCU4 4167 aa13□□□□□ -0.33
HDDC3-201ENST00000330334 HELTA6NFD8 242 aa13□□□□□ -0.33
HDDC3-201ENST00000330334 TMEM128Q5BJH2 165 aa13□□□□□ -0.33
HDDC3-201ENST00000330334 FAM24BQ8N5W8 94 aa13□□□□□ -0.33
HDDC3-201ENST00000330334 TRIM63Q969Q1 353 aa13□□□□□ -0.33
HDDC3-201ENST00000330334 RABAC1Q9UI14 185 aa13□□□□□ -0.33
HDDC3-201ENST00000330334 DUXBA0A1W2PPF3 345 aa12.99□□□□□ -0.33
HDDC3-201ENST00000330334 IFNA10P01566 189 aa12.99□□□□□ -0.33
HDDC3-201ENST00000330334 HNRNPCP07910 306 aaKnown RBP eCLIP12.99□□□□□ -0.33
HDDC3-201ENST00000330334 RD3LP0DJH9 198 aa12.99□□□□□ -0.33
HDDC3-201ENST00000330334 PMS2P11Q13670 270 aa12.99□□□□□ -0.33
HDDC3-201ENST00000330334 RBMS2Q15434 407 aaKnown RBP12.99□□□□□ -0.33
HDDC3-201ENST00000330334 TMEM41BQ5BJD5 291 aa12.99□□□□□ -0.33
HDDC3-201ENST00000330334 LEMD1Q68G75 181 aa12.99□□□□□ -0.33
HDDC3-201ENST00000330334 C16orf54Q6UWD8 224 aa12.99□□□□□ -0.33
HDDC3-201ENST00000330334 STHQ8IWL8 128 aa12.99□□□□□ -0.33
HDDC3-201ENST00000330334 STXBP6Q8NFX7 210 aa12.99□□□□□ -0.33
HDDC3-201ENST00000330334 OR11H2Q8NH07 326 aa12.99□□□□□ -0.33
HDDC3-201ENST00000330334 DTD1Q8TEA8 209 aa12.99□□□□□ -0.33
HDDC3-201ENST00000330334 NPIPB3Q92617 1050 aa12.99□□□□□ -0.33
HDDC3-201ENST00000330334 C11orf68Q9H3H3 251 aaKnown RBP12.99□□□□□ -0.33
HDDC3-201ENST00000330334 SEPSECSQ9HD40 501 aaKnown RBP12.99□□□□□ -0.33
HDDC3-201ENST00000330334 PRR13Q9NZ81 148 aa12.99□□□□□ -0.33
HDDC3-201ENST00000330334 KLK5Q9Y337 293 aaPredicted RBP12.99□□□□□ -0.33
HDDC3-201ENST00000330334 NXPH3O95157 252 aa12.98□□□□□ -0.33
HDDC3-201ENST00000330334 TOMM40O96008 361 aa12.98□□□□□ -0.33
HDDC3-201ENST00000330334 CA1P00915 261 aaPredicted RBP12.98□□□□□ -0.33
HDDC3-201ENST00000330334 GPX4P36969 197 aaPredicted RBP12.98□□□□□ -0.33
HDDC3-201ENST00000330334 PYDC2Q56P42 97 aa12.98□□□□□ -0.33
HDDC3-201ENST00000330334 TOMM5Q8N4H5 51 aa12.98□□□□□ -0.33
HDDC3-201ENST00000330334 LRTM2Q8N967 370 aa12.98□□□□□ -0.33
HDDC3-201ENST00000330334 GLMPQ8WWB7 406 aa12.98□□□□□ -0.33
HDDC3-201ENST00000330334 LINC00476Q8WZB0 136 aa12.98□□□□□ -0.33
HDDC3-201ENST00000330334 SLC25A21Q9BQT8 299 aaPredicted RBP12.98□□□□□ -0.33
HDDC3-201ENST00000330334 RBKSQ9H477 322 aa12.98□□□□□ -0.33
HDDC3-201ENST00000330334 V9GYH0 126 aa12.98□□□□□ -0.33
HDDC3-201ENST00000330334 EPPK1P58107 5090 aaKnown RBP12.98□□□□□ -0.33
HDDC3-201ENST00000330334 PITX3O75364 302 aa12.97□□□□□ -0.33
HDDC3-201ENST00000330334 SLC25A6P12236 298 aa12.97□□□□□ -0.33
HDDC3-201ENST00000330334 MORN3Q6PF18 240 aaPredicted RBP12.97□□□□□ -0.33
HDDC3-201ENST00000330334 TRPT1Q86TN4 253 aaKnown RBP12.97□□□□□ -0.33
HDDC3-201ENST00000330334 BUB3O43684 328 aa12.96□□□□□ -0.33
HDDC3-201ENST00000330334 IL4P05112 153 aa12.96□□□□□ -0.33
HDDC3-201ENST00000330334 GIG44P09565 113 aaPredicted RBP12.96□□□□□ -0.33
HDDC3-201ENST00000330334 SPP1P10451 314 aa12.96□□□□□ -0.33
HDDC3-201ENST00000330334 S100A5P33763 92 aa12.96□□□□□ -0.33
HDDC3-201ENST00000330334 USF2Q15853 346 aaPredicted RBP12.96□□□□□ -0.33
HDDC3-201ENST00000330334 ACY3Q96HD9 319 aa12.96□□□□□ -0.33
HDDC3-201ENST00000330334 MFFQ9GZY8 342 aa12.96□□□□□ -0.33
HDDC3-201ENST00000330334 FAM90A26D6RGX4 464 aa12.95□□□□□ -0.34
HDDC3-201ENST00000330334 IFNA4P05014 189 aa12.95□□□□□ -0.34
HDDC3-201ENST00000330334 PSG1P11464 419 aa12.95□□□□□ -0.34
HDDC3-201ENST00000330334 ZNF79Q15937 498 aa12.95□□□□□ -0.34
HDDC3-201ENST00000330334 CCDC190Q86UF4 302 aa12.95□□□□□ -0.34
HDDC3-201ENST00000330334 OR1S1Q8NH92 325 aa12.95□□□□□ -0.34
HDDC3-201ENST00000330334 PHLDA1Q8WV24 401 aaPredicted RBP12.95□□□□□ -0.34
HDDC3-201ENST00000330334 PFDN2Q9UHV9 154 aa12.95□□□□□ -0.34
HDDC3-201ENST00000330334 ZNF701M0R085 212 aaPredicted RBP12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 70.2 ms