RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 CNTFRP26992 372 aa14.41□□□□□ -0.1
SYNPO-201ENST00000307662 APOBEC3AP31941 199 aaPredicted RBP14.41□□□□□ -0.1
SYNPO-201ENST00000307662 IGHV3OR16-8A0A075B7F1 116 aa14.41□□□□□ -0.1
SYNPO-201ENST00000307662 SLC25A48Q6ZT89 311 aaKnown RBP14.41□□□□□ -0.1
SYNPO-201ENST00000307662 TDRD6O60522 2096 aaKnown RBP14.41□□□□□ -0.1
SYNPO-201ENST00000307662 SPATA31B1PQ5VZV4 182 aa14.4□□□□□ -0.1
SYNPO-201ENST00000307662 IMMP1LQ96LU5 166 aa14.4□□□□□ -0.1
SYNPO-201ENST00000307662 PIMREGQ9BSJ6 248 aa14.4□□□□□ -0.1
SYNPO-201ENST00000307662 EREGO14944 169 aa14.4□□□□□ -0.1
SYNPO-201ENST00000307662 MPV17L2Q567V2 206 aa14.4□□□□□ -0.1
SYNPO-201ENST00000307662 TPTE2P1Q5T6R2 138 aa14.4□□□□□ -0.1
SYNPO-201ENST00000307662 NAA38Q9BRA0 125 aaKnown RBP14.4□□□□□ -0.1
SYNPO-201ENST00000307662 CASP8AP2Q9UKL3 1982 aa14.4□□□□□ -0.1
SYNPO-201ENST00000307662 TRAV5A0A0B4J249 113 aa14.4□□□□□ -0.1
SYNPO-201ENST00000307662 EFEMP2O95967 443 aa14.4□□□□□ -0.1
SYNPO-201ENST00000307662 TMEM14EPQ6UXP3 125 aa14.4□□□□□ -0.1
SYNPO-201ENST00000307662 CLEC19AQ6UXS0 136 aa14.4□□□□□ -0.1
SYNPO-201ENST00000307662 RBMY1BA6NDE4 496 aaKnown RBP14.39□□□□□ -0.11
SYNPO-201ENST00000307662 RBMY1EA6NEQ0 496 aaKnown RBP14.39□□□□□ -0.11
SYNPO-201ENST00000307662 RBMY1DP0C7P1 496 aaKnown RBP14.39□□□□□ -0.11
SYNPO-201ENST00000307662 RBMY1A1P0DJD3 496 aaKnown RBP14.39□□□□□ -0.11
SYNPO-201ENST00000307662 RBMY1CP0DJD4 496 aa14.39□□□□□ -0.11
SYNPO-201ENST00000307662 EVI2AP22794 236 aa14.39□□□□□ -0.11
SYNPO-201ENST00000307662 LTBRP36941 435 aa14.39□□□□□ -0.11
SYNPO-201ENST00000307662 IFI27P40305 119 aaPredicted RBP14.39□□□□□ -0.11
SYNPO-201ENST00000307662 hDV102S1A0JD36 115 aa14.39□□□□□ -0.11
SYNPO-201ENST00000307662 A8MWP6 167 aa14.39□□□□□ -0.11
SYNPO-201ENST00000307662 YAE1D1Q9NRH1 226 aa14.39□□□□□ -0.11
SYNPO-201ENST00000307662 MRPL27Q9P0M9 148 aaKnown RBP14.39□□□□□ -0.11
SYNPO-201ENST00000307662 ESDP10768 282 aa14.39□□□□□ -0.11
SYNPO-201ENST00000307662 GUSBP1Q15486 140 aa14.39□□□□□ -0.11
SYNPO-201ENST00000307662 TRAV2A0A0B4J234 112 aa14.39□□□□□ -0.11
SYNPO-201ENST00000307662 LCN12Q6JVE5 192 aa14.39□□□□□ -0.11
SYNPO-201ENST00000307662 BCL6BQ8N143 479 aaPredicted RBP14.39□□□□□ -0.11
SYNPO-201ENST00000307662 C8orf46Q8TAG6 207 aa14.39□□□□□ -0.11
SYNPO-201ENST00000307662 GBF1Q92538 1859 aa14.38□□□□□ -0.11
SYNPO-201ENST00000307662 WDR90Q96KV7 1748 aa14.38□□□□□ -0.11
SYNPO-201ENST00000307662 IGLV3-12A0A075B6K2 115 aa14.38□□□□□ -0.11
SYNPO-201ENST00000307662 F2Z2F3 143 aa14.38□□□□□ -0.11
SYNPO-201ENST00000307662 ZFAND6Q6FIF0 208 aa14.38□□□□□ -0.11
SYNPO-201ENST00000307662 ALPK2Q86TB3 2170 aa14.38□□□□□ -0.11
SYNPO-201ENST00000307662 PDCD11Q14690 1871 aaKnown RBP14.38□□□□□ -0.11
SYNPO-201ENST00000307662 TMPRSS3P57727 454 aa14.38□□□□□ -0.11
SYNPO-201ENST00000307662 RNF182Q8N6D2 247 aa14.38□□□□□ -0.11
SYNPO-201ENST00000307662 FOXH1O75593 365 aa14.38□□□□□ -0.11
SYNPO-201ENST00000307662 CCL3L1P16619 93 aa14.38□□□□□ -0.11
SYNPO-201ENST00000307662 MGST2Q99735 147 aa14.38□□□□□ -0.11
SYNPO-201ENST00000307662 A0A087X0K7 114 aa14.37□□□□□ -0.11
SYNPO-201ENST00000307662 TRAV12-3A0A0B4J271 114 aa14.37□□□□□ -0.11
SYNPO-201ENST00000307662 GAGE2BQ13066 116 aa14.37□□□□□ -0.11
SYNPO-201ENST00000307662 GAGE2EQ4V326 116 aa14.37□□□□□ -0.11
SYNPO-201ENST00000307662 KIR3DL3Q8N743 410 aa14.37□□□□□ -0.11
SYNPO-201ENST00000307662 GAGE2DQ9UEU5 116 aa14.37□□□□□ -0.11
SYNPO-201ENST00000307662 MST1LQ2TV78 715 aa14.37□□□□□ -0.11
SYNPO-201ENST00000307662 TMEM190Q8WZ59 177 aa14.37□□□□□ -0.11
SYNPO-201ENST00000307662 IGKV1-27A0A075B6S5 117 aa14.37□□□□□ -0.11
SYNPO-201ENST00000307662 NBR2O15453 112 aa14.37□□□□□ -0.11
SYNPO-201ENST00000307662 IGKV1-5P01602 117 aa14.37□□□□□ -0.11
SYNPO-201ENST00000307662 FAM27E3Q08E93 113 aa14.37□□□□□ -0.11
SYNPO-201ENST00000307662 MRPL14Q6P1L8 145 aaKnown RBP14.37□□□□□ -0.11
SYNPO-201ENST00000307662 LHX2P50458 406 aa14.37□□□□□ -0.11
SYNPO-201ENST00000307662 FAM90A2PQ658T7 463 aa14.37□□□□□ -0.11
SYNPO-201ENST00000307662 MTCL1Q9Y4B5 1905 aaKnown RBP14.37□□□□□ -0.11
SYNPO-201ENST00000307662 QRFPP83859 136 aa14.37□□□□□ -0.11
SYNPO-201ENST00000307662 GTSCR1Q86UQ5 136 aa14.37□□□□□ -0.11
SYNPO-201ENST00000307662 DMRTC2Q8IXT2 367 aaPredicted RBP14.37□□□□□ -0.11
SYNPO-201ENST00000307662 SEPSECSQ9HD40 501 aaKnown RBP14.37□□□□□ -0.11
SYNPO-201ENST00000307662 TFF1P04155 84 aa14.36□□□□□ -0.11
SYNPO-201ENST00000307662 ZNF883P0CG24 379 aa14.36□□□□□ -0.11
SYNPO-201ENST00000307662 DUX3Q96PT4 197 aa14.36□□□□□ -0.11
SYNPO-201ENST00000307662 PLNP26678 52 aa14.36□□□□□ -0.11
SYNPO-201ENST00000307662 PSG1P11464 419 aa14.36□□□□□ -0.11
SYNPO-201ENST00000307662 TOMM7Q9P0U1 55 aa14.36□□□□□ -0.11
SYNPO-201ENST00000307662 SYS1-DBNDD2H3BUS1 97 aa14.36□□□□□ -0.11
SYNPO-201ENST00000307662 A0A0G2JMZ2 1700 aa14.35□□□□□ -0.11
SYNPO-201ENST00000307662 LRRC37A2A6NM11 1700 aa14.35□□□□□ -0.11
SYNPO-201ENST00000307662 D6R8Y8 96 aa14.35□□□□□ -0.11
SYNPO-201ENST00000307662 PPIFP30405 207 aaKnown RBP14.35□□□□□ -0.11
SYNPO-201ENST00000307662 IGHV3OR16-10A0A075B7F0 116 aa14.35□□□□□ -0.11
SYNPO-201ENST00000307662 TRAV21A0A0B4J279 112 aa14.35□□□□□ -0.11
SYNPO-201ENST00000307662 LAGE3Q14657 143 aa14.35□□□□□ -0.11
SYNPO-201ENST00000307662 NUP35Q8NFH5 326 aa14.35□□□□□ -0.11
SYNPO-201ENST00000307662 FDCSPQ8NFU4 85 aa14.35□□□□□ -0.11
SYNPO-201ENST00000307662 ERG28Q9UKR5 140 aa14.35□□□□□ -0.11
SYNPO-201ENST00000307662 FGFBP3Q8TAT2 258 aa14.35□□□□□ -0.11
SYNPO-201ENST00000307662 DOCK4Q8N1I0 1966 aa14.35□□□□□ -0.11
SYNPO-201ENST00000307662 RPRMLQ8N4K4 120 aa14.35□□□□□ -0.11
SYNPO-201ENST00000307662 NYNRINQ9P2P1 1898 aaKnown RBP14.35□□□□□ -0.11
SYNPO-201ENST00000307662 SVILO95425 2214 aa14.35□□□□□ -0.11
SYNPO-201ENST00000307662 HEATR5BQ9P2D3 2071 aa14.35□□□□□ -0.11
SYNPO-201ENST00000307662 C17orf100A8MU93 164 aa14.34□□□□□ -0.11
SYNPO-201ENST00000307662 NABP1Q96AH0 204 aa14.34□□□□□ -0.11
SYNPO-201ENST00000307662 GAGE12BA1L429 117 aa14.34□□□□□ -0.11
SYNPO-201ENST00000307662 CD5LO43866 347 aa14.34□□□□□ -0.11
SYNPO-201ENST00000307662 POLR3KQ9Y2Y1 108 aaPredicted RBP14.34□□□□□ -0.11
SYNPO-201ENST00000307662 COX11Q9Y6N1 276 aa14.34□□□□□ -0.11
SYNPO-201ENST00000307662 OR10W1Q8NGF6 305 aa14.34□□□□□ -0.11
SYNPO-201ENST00000307662 LINC01549A6NIU2 74 aa14.34□□□□□ -0.11
SYNPO-201ENST00000307662 CD33P20138 364 aa14.34□□□□□ -0.11
SYNPO-201ENST00000307662 PDLIM4P50479 330 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 61.1 ms