RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 CORO2AQ92828 525 aa17.2■□□□□ 0.34
TRIM28-201ENST00000253024 PAXXQ9BUH6 204 aa17.2■□□□□ 0.34
TRIM28-201ENST00000253024 NDUFA4L2Q9NRX3 87 aa17.2■□□□□ 0.34
TRIM28-201ENST00000253024 TBL2Q9Y4P3 447 aaKnown RBP17.2■□□□□ 0.34
TRIM28-201ENST00000253024 A0A1W2PPI3 338 aa17.19■□□□□ 0.34
TRIM28-201ENST00000253024 M0QZ24 198 aa17.19■□□□□ 0.34
TRIM28-201ENST00000253024 IGLV2-8P01709 118 aa17.19■□□□□ 0.34
TRIM28-201ENST00000253024 TAS2R45P59539 299 aa17.19■□□□□ 0.34
TRIM28-201ENST00000253024 MFAP2P55001 183 aa17.19■□□□□ 0.34
TRIM28-201ENST00000253024 TAS2R60P59551 318 aa17.19■□□□□ 0.34
TRIM28-201ENST00000253024 SIGLECL1Q8N7X8 197 aa17.19■□□□□ 0.34
TRIM28-201ENST00000253024 FAM167A-AS1Q96KT0 104 aa17.19■□□□□ 0.34
TRIM28-201ENST00000253024 NOL4LQ96MY1 436 aaPredicted RBP17.19■□□□□ 0.34
TRIM28-201ENST00000253024 CASP6P55212 293 aa17.19■□□□□ 0.34
TRIM28-201ENST00000253024 SLAQ13239 276 aa17.19■□□□□ 0.34
TRIM28-201ENST00000253024 C2orf83Q53S99 150 aa17.19■□□□□ 0.34
TRIM28-201ENST00000253024 TMEM68Q96MH6 324 aa17.19■□□□□ 0.34
TRIM28-201ENST00000253024 DLL1O00548 723 aa17.18■□□□□ 0.34
TRIM28-201ENST00000253024 TCAPO15273 167 aa17.18■□□□□ 0.34
TRIM28-201ENST00000253024 TMEM249Q2WGJ8 235 aa17.18■□□□□ 0.34
TRIM28-201ENST00000253024 LCN12Q6JVE5 192 aa17.18■□□□□ 0.34
TRIM28-201ENST00000253024 FAM169BQ8N8A8 192 aa17.18■□□□□ 0.34
TRIM28-201ENST00000253024 OR5B3Q8NH48 314 aa17.18■□□□□ 0.34
TRIM28-201ENST00000253024 RAB9BQ9NP90 201 aa17.18■□□□□ 0.34
TRIM28-201ENST00000253024 MAJINQ3KP22 176 aa17.18■□□□□ 0.34
TRIM28-201ENST00000253024 C11orf52Q96A22 123 aa17.18■□□□□ 0.34
TRIM28-201ENST00000253024 TRAV8-1A0A0A6YYK1 113 aa17.17■□□□□ 0.34
TRIM28-201ENST00000253024 TMEM178BH3BS89 294 aa17.17■□□□□ 0.34
TRIM28-201ENST00000253024 FAM87AP0C7U9 286 aa17.17■□□□□ 0.34
TRIM28-201ENST00000253024 USF1P22415 310 aaPredicted RBP17.17■□□□□ 0.34
TRIM28-201ENST00000253024 ZNF124Q15973 351 aa17.17■□□□□ 0.34
TRIM28-201ENST00000253024 ZNF833PQ6ZTB9 187 aa17.17■□□□□ 0.34
TRIM28-201ENST00000253024 LINC01560Q8TB33 94 aa17.17■□□□□ 0.34
TRIM28-201ENST00000253024 BET1LQ9NYM9 111 aa17.17■□□□□ 0.34
TRIM28-201ENST00000253024 CEACAM8P31997 349 aaPredicted RBP17.17■□□□□ 0.34
TRIM28-201ENST00000253024 PMCHL1Q16048 86 aa17.17■□□□□ 0.34
TRIM28-201ENST00000253024 LRRC10Q5BKY1 277 aa17.17■□□□□ 0.34
TRIM28-201ENST00000253024 C1orf174Q8IYL3 243 aa17.17■□□□□ 0.34
TRIM28-201ENST00000253024 PRSS33Q8NF86 280 aa17.17■□□□□ 0.34
TRIM28-201ENST00000253024 OR4C13Q8NGP0 309 aa17.17■□□□□ 0.34
TRIM28-201ENST00000253024 ZNF257Q9Y2Q1 563 aa17.17■□□□□ 0.34
TRIM28-201ENST00000253024 C9JCJ5 164 aa17.16■□□□□ 0.34
TRIM28-201ENST00000253024 CRYABP02511 175 aaKnown RBP17.16■□□□□ 0.34
TRIM28-201ENST00000253024 SLC25A5P05141 298 aaKnown RBP17.16■□□□□ 0.34
TRIM28-201ENST00000253024 TFPI2P48307 235 aa17.16■□□□□ 0.34
TRIM28-201ENST00000253024 TCF24Q7RTU0 167 aa17.16■□□□□ 0.34
TRIM28-201ENST00000253024 TXNDC17Q9BRA2 123 aa17.16■□□□□ 0.34
TRIM28-201ENST00000253024 TMEM136Q6ZRR5 245 aa17.16■□□□□ 0.34
TRIM28-201ENST00000253024 CDC42EP3Q9UKI2 254 aa17.16■□□□□ 0.34
TRIM28-201ENST00000253024 SSUH2Q9Y2M2 353 aa17.16■□□□□ 0.34
TRIM28-201ENST00000253024 GRNP28799 593 aaKnown RBP17.16■□□□□ 0.34
TRIM28-201ENST00000253024 ZNF137PP52743 207 aa17.16■□□□□ 0.34
TRIM28-201ENST00000253024 FOXA3P55318 350 aaPredicted RBP17.16■□□□□ 0.34
TRIM28-201ENST00000253024 TPTE2P1Q5T6R2 138 aa17.16■□□□□ 0.34
TRIM28-201ENST00000253024 PGPA6NDG6 321 aa17.15■□□□□ 0.34
TRIM28-201ENST00000253024 C22orf46C9J442 243 aa17.15■□□□□ 0.34
TRIM28-201ENST00000253024 BMPR1BO00238 502 aa17.15■□□□□ 0.34
TRIM28-201ENST00000253024 OR2D3Q8NGH3 330 aa17.15■□□□□ 0.34
TRIM28-201ENST00000253024 OSR1Q8TAX0 266 aaPredicted RBP17.15■□□□□ 0.34
TRIM28-201ENST00000253024 POU2AF1Q16633 256 aa17.15■□□□□ 0.34
TRIM28-201ENST00000253024 OR5AN1Q8NGI8 311 aa17.15■□□□□ 0.34
TRIM28-201ENST00000253024 IGKV1D-37A0A075B6S9 117 aa17.14■□□□□ 0.33
TRIM28-201ENST00000253024 SH2D7A6NKC9 451 aaPredicted RBP17.14■□□□□ 0.33
TRIM28-201ENST00000253024 LOXP28300 417 aaPredicted RBP17.14■□□□□ 0.33
TRIM28-201ENST00000253024 CX3CL1P78423 397 aa17.14■□□□□ 0.33
TRIM28-201ENST00000253024 C1orf194Q5T5A4 169 aa17.14■□□□□ 0.33
TRIM28-201ENST00000253024 TEX36Q5VZQ5 186 aa17.14■□□□□ 0.33
TRIM28-201ENST00000253024 VAMP8Q9BV40 100 aa17.14■□□□□ 0.33
TRIM28-201ENST00000253024 TNFRSF19Q9NS68 423 aa17.14■□□□□ 0.33
TRIM28-201ENST00000253024 TP73-AS1Q9UF72 201 aa17.14■□□□□ 0.33
TRIM28-201ENST00000253024 ZNF841Q6ZN19 808 aa17.14■□□□□ 0.33
TRIM28-201ENST00000253024 FBXL15Q9H469 300 aa17.14■□□□□ 0.33
TRIM28-201ENST00000253024 ZNF835Q9Y2P0 537 aa17.14■□□□□ 0.33
TRIM28-201ENST00000253024 PPOXP50336 477 aa17.13■□□□□ 0.33
TRIM28-201ENST00000253024 NRN1Q9NPD7 142 aa17.13■□□□□ 0.33
TRIM28-201ENST00000253024 ZNF331Q9NQX6 463 aaPredicted RBP17.13■□□□□ 0.33
TRIM28-201ENST00000253024 DIRC3C9JPN6 131 aa17.13■□□□□ 0.33
TRIM28-201ENST00000253024 PLGLAQ15195 96 aa17.13■□□□□ 0.33
TRIM28-201ENST00000253024 RNASE6Q93091 150 aaKnown RBP17.13■□□□□ 0.33
TRIM28-201ENST00000253024 FAM90A27PA6NNH2 459 aa17.13■□□□□ 0.33
TRIM28-201ENST00000253024 E7EQL1 145 aa17.13■□□□□ 0.33
TRIM28-201ENST00000253024 ITGB1BP1O14713 200 aa17.13■□□□□ 0.33
TRIM28-201ENST00000253024 GDF5OSQ5U4N7 250 aa17.13■□□□□ 0.33
TRIM28-201ENST00000253024 NUDT10Q8NFP7 164 aa17.13■□□□□ 0.33
TRIM28-201ENST00000253024 NUDT11Q96G61 164 aa17.13■□□□□ 0.33
TRIM28-201ENST00000253024 WASHC3Q9Y3C0 194 aa17.13■□□□□ 0.33
TRIM28-201ENST00000253024 IGLV2-23P01705 113 aa17.12■□□□□ 0.33
TRIM28-201ENST00000253024 LYZP61626 148 aa17.12■□□□□ 0.33
TRIM28-201ENST00000253024 IGFL3Q6UXB1 125 aa17.12■□□□□ 0.33
TRIM28-201ENST00000253024 IGF2BP2-AS1Q96M15 143 aa17.12■□□□□ 0.33
TRIM28-201ENST00000253024 HRNRQ86YZ3 2850 aaPredicted RBP17.12■□□□□ 0.33
TRIM28-201ENST00000253024 A0A1W2PS18 150 aa17.12■□□□□ 0.33
TRIM28-201ENST00000253024 H0Y8G0 127 aa17.12■□□□□ 0.33
TRIM28-201ENST00000253024 PEX7O00628 323 aa17.12■□□□□ 0.33
TRIM28-201ENST00000253024 APCSP02743 223 aa17.12■□□□□ 0.33
TRIM28-201ENST00000253024 UBE2G1P62253 170 aa17.12■□□□□ 0.33
TRIM28-201ENST00000253024 LINC00322Q6ZN03 302 aaPredicted RBP17.12■□□□□ 0.33
TRIM28-201ENST00000253024 ZNF329Q86UD4 541 aa17.12■□□□□ 0.33
TRIM28-201ENST00000253024 C2orf88Q9BSF0 95 aa17.12■□□□□ 0.33
TRIM28-201ENST00000253024 ZNF25P17030 456 aaPredicted RBP17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms