RNA–Protein interactions for RNA: ENST00000638142.2

SYNGAP1-227, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5

Gene SYNGAP1, Length 2,499 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-227ENST00000638142 RASL11AQ6T310 242 aa16.32■□□□□ 0.2
SYNGAP1-227ENST00000638142 PIP4P1Q86T03 277 aa16.32■□□□□ 0.2
SYNGAP1-227ENST00000638142 A0A1W2PN81 502 aa16.31■□□□□ 0.2
SYNGAP1-227ENST00000638142 NKX6-3A6NJ46 265 aa16.31■□□□□ 0.2
SYNGAP1-227ENST00000638142 H0YJW9 148 aa16.31■□□□□ 0.2
SYNGAP1-227ENST00000638142 TMEM177Q53S58 311 aa16.31■□□□□ 0.2
SYNGAP1-227ENST00000638142 OR5AN1Q8NGI8 311 aa16.31■□□□□ 0.2
SYNGAP1-227ENST00000638142 SNRNP40Q96DI7 357 aaKnown RBP16.31■□□□□ 0.2
SYNGAP1-227ENST00000638142 RCHY1Q96PM5 261 aa16.31■□□□□ 0.2
SYNGAP1-227ENST00000638142 ZFP30Q9Y2G7 519 aa16.31■□□□□ 0.2
SYNGAP1-227ENST00000638142 ZNF324O75467 553 aaPredicted RBP16.31■□□□□ 0.2
SYNGAP1-227ENST00000638142 USF1P22415 310 aaPredicted RBP16.31■□□□□ 0.2
SYNGAP1-227ENST00000638142 MEF2CQ06413 473 aaPredicted RBP16.31■□□□□ 0.2
SYNGAP1-227ENST00000638142 SPATA45Q537H7 98 aa16.31■□□□□ 0.2
SYNGAP1-227ENST00000638142 MORN5Q5VZ52 161 aa16.31■□□□□ 0.2
SYNGAP1-227ENST00000638142 FAM231DQ6ZW35 169 aa16.31■□□□□ 0.2
SYNGAP1-227ENST00000638142 OR1L4Q8NGR5 311 aa16.31■□□□□ 0.2
SYNGAP1-227ENST00000638142 OR2T6Q8NHC8 308 aa16.31■□□□□ 0.2
SYNGAP1-227ENST00000638142 WIPF2Q8TF74 440 aaPredicted RBP16.31■□□□□ 0.2
SYNGAP1-227ENST00000638142 ZNF331Q9NQX6 463 aaPredicted RBP16.31■□□□□ 0.2
SYNGAP1-227ENST00000638142 UQCR10Q9UDW1 63 aa16.31■□□□□ 0.2
SYNGAP1-227ENST00000638142 TRAV5A0A0B4J249 113 aa16.3■□□□□ 0.2
SYNGAP1-227ENST00000638142 APCSP02743 223 aa16.3■□□□□ 0.2
SYNGAP1-227ENST00000638142 C1orf185Q5T7R7 199 aa16.3■□□□□ 0.2
SYNGAP1-227ENST00000638142 AMMECR1Q9Y4X0 333 aaPredicted RBP16.3■□□□□ 0.2
SYNGAP1-227ENST00000638142 COX7A2P2O60397 106 aa16.3■□□□□ 0.2
SYNGAP1-227ENST00000638142 FTH1P19P0C7X4 201 aa16.3■□□□□ 0.2
SYNGAP1-227ENST00000638142 CHRNB4P30926 498 aa16.3■□□□□ 0.2
SYNGAP1-227ENST00000638142 RPRMLQ8N4K4 120 aa16.3■□□□□ 0.2
SYNGAP1-227ENST00000638142 OR4A5Q8NH83 315 aa16.3■□□□□ 0.2
SYNGAP1-227ENST00000638142 YLPM1P49750 1951 aaKnown RBP16.3■□□□□ 0.2
SYNGAP1-227ENST00000638142 PMCHP20382 165 aa16.29■□□□□ 0.2
SYNGAP1-227ENST00000638142 PRRX1P54821 245 aa16.29■□□□□ 0.2
SYNGAP1-227ENST00000638142 VSTM2AQ8TAG5 236 aa16.29■□□□□ 0.2
SYNGAP1-227ENST00000638142 TMEM167AQ8TBQ9 72 aa16.29■□□□□ 0.2
SYNGAP1-227ENST00000638142 FLYWCH2Q96CP2 140 aaKnown RBP16.29■□□□□ 0.2
SYNGAP1-227ENST00000638142 ZNF430Q9H8G1 570 aaPredicted RBP16.29■□□□□ 0.2
SYNGAP1-227ENST00000638142 SVILO95425 2214 aa16.29■□□□□ 0.2
SYNGAP1-227ENST00000638142 CD40P25942 277 aa16.29■□□□□ 0.2
SYNGAP1-227ENST00000638142 BPIFB3P59826 476 aa16.29■□□□□ 0.2
SYNGAP1-227ENST00000638142 C10orf113Q5VZT2 155 aa16.29■□□□□ 0.2
SYNGAP1-227ENST00000638142 PAXXQ9BUH6 204 aa16.29■□□□□ 0.2
SYNGAP1-227ENST00000638142 ZNF355PQ9NSJ1 428 aa16.29■□□□□ 0.2
SYNGAP1-227ENST00000638142 CBY1Q9Y3M2 126 aa16.29■□□□□ 0.2
SYNGAP1-227ENST00000638142 IGLC2P0DOY2 106 aa16.28■□□□□ 0.2
SYNGAP1-227ENST00000638142 IGLC3P0DOY3 106 aa16.28■□□□□ 0.2
SYNGAP1-227ENST00000638142 MBD6Q96DN6 1003 aa16.28■□□□□ 0.2
SYNGAP1-227ENST00000638142 MRPL27Q9P0M9 148 aaKnown RBP16.28■□□□□ 0.2
SYNGAP1-227ENST00000638142 LOC400499M0QZD8 3231 aa16.28■□□□□ 0.2
SYNGAP1-227ENST00000638142 C19orf35Q6ZS72 473 aa16.28■□□□□ 0.2
SYNGAP1-227ENST00000638142 NIT1Q86X76 327 aa16.28■□□□□ 0.2
SYNGAP1-227ENST00000638142 NHLRC2Q8NBF2 726 aa16.28■□□□□ 0.2
SYNGAP1-227ENST00000638142 OR4C13Q8NGP0 309 aa16.28■□□□□ 0.2
SYNGAP1-227ENST00000638142 DYSFO75923 2080 aa16.28■□□□□ 0.2
SYNGAP1-227ENST00000638142 TCRBV4S1A1TA0A5B7 111 aa16.27■□□□□ 0.2
SYNGAP1-227ENST00000638142 PEX7O00628 323 aa16.27■□□□□ 0.2
SYNGAP1-227ENST00000638142 CA1P00915 261 aaPredicted RBP16.27■□□□□ 0.2
SYNGAP1-227ENST00000638142 TNFRSF1AP19438 455 aa16.27■□□□□ 0.2
SYNGAP1-227ENST00000638142 SUB1P53999 127 aaKnown RBP eCLIP16.27■□□□□ 0.2
SYNGAP1-227ENST00000638142 ZNF329Q86UD4 541 aa16.27■□□□□ 0.2
SYNGAP1-227ENST00000638142 NUP37Q8NFH4 326 aa16.27■□□□□ 0.2
SYNGAP1-227ENST00000638142 LINC00479Q96M42 142 aa16.27■□□□□ 0.2
SYNGAP1-227ENST00000638142 E7EUB6 86 aa16.27■□□□□ 0.19
SYNGAP1-227ENST00000638142 C3orf79P0CE67 100 aa16.27■□□□□ 0.19
SYNGAP1-227ENST00000638142 PYYP10082 97 aa16.27■□□□□ 0.19
SYNGAP1-227ENST00000638142 TFPI2P48307 235 aa16.27■□□□□ 0.19
SYNGAP1-227ENST00000638142 MMDQ15546 238 aa16.27■□□□□ 0.19
SYNGAP1-227ENST00000638142 FAM71F2Q6NXP2 309 aa16.27■□□□□ 0.19
SYNGAP1-227ENST00000638142 PDPNQ86YL7 162 aa16.27■□□□□ 0.19
SYNGAP1-227ENST00000638142 DEFB124Q8NES8 71 aa16.27■□□□□ 0.19
SYNGAP1-227ENST00000638142 TSKUQ8WUA8 353 aa16.27■□□□□ 0.19
SYNGAP1-227ENST00000638142 FAM168AQ92567 244 aa16.27■□□□□ 0.19
SYNGAP1-227ENST00000638142 GRAMD2BQ96HH9 432 aa16.27■□□□□ 0.19
SYNGAP1-227ENST00000638142 CHRDL1Q9BU40 450 aa16.27■□□□□ 0.19
SYNGAP1-227ENST00000638142 HYPMO75409 117 aa16.26■□□□□ 0.19
SYNGAP1-227ENST00000638142 SSBP2P81877 361 aaPredicted RBP16.26■□□□□ 0.19
SYNGAP1-227ENST00000638142 WT1-ASQ06250 92 aa16.26■□□□□ 0.19
SYNGAP1-227ENST00000638142 THAP8Q8NA92 274 aa16.26■□□□□ 0.19
SYNGAP1-227ENST00000638142 FNDC4Q9H6D8 234 aaPredicted RBP16.26■□□□□ 0.19
SYNGAP1-227ENST00000638142 SPAARA0A1B0GVQ0 90 aa16.26■□□□□ 0.19
SYNGAP1-227ENST00000638142 DPRXA6NFQ7 191 aa16.26■□□□□ 0.19
SYNGAP1-227ENST00000638142 SLAQ13239 276 aa16.26■□□□□ 0.19
SYNGAP1-227ENST00000638142 IGFL3Q6UXB1 125 aa16.26■□□□□ 0.19
SYNGAP1-227ENST00000638142 PATE2Q6UY27 113 aa16.26■□□□□ 0.19
SYNGAP1-227ENST00000638142 SSBP3Q9BWW4 388 aaPredicted RBP16.26■□□□□ 0.19
SYNGAP1-227ENST00000638142 SPENQ96T58 3664 aaKnown RBP16.26■□□□□ 0.19
SYNGAP1-227ENST00000638142 FAM27E3Q08E93 113 aa16.25■□□□□ 0.19
SYNGAP1-227ENST00000638142 TBR1Q16650 682 aa16.25■□□□□ 0.19
SYNGAP1-227ENST00000638142 C11orf42Q8N5U0 333 aa16.25■□□□□ 0.19
SYNGAP1-227ENST00000638142 C18orf32Q8TCD1 76 aa16.25■□□□□ 0.19
SYNGAP1-227ENST00000638142 NPIPB3Q92617 1050 aa16.25■□□□□ 0.19
SYNGAP1-227ENST00000638142 CGB1A6NKQ9 187 aa16.25■□□□□ 0.19
SYNGAP1-227ENST00000638142 CCL3L1P16619 93 aa16.25■□□□□ 0.19
SYNGAP1-227ENST00000638142 CCL8P80075 99 aa16.25■□□□□ 0.19
SYNGAP1-227ENST00000638142 DMRTA1Q5VZB9 504 aa16.25■□□□□ 0.19
SYNGAP1-227ENST00000638142 C22orf34Q6ZV56 151 aa16.25■□□□□ 0.19
SYNGAP1-227ENST00000638142 KLHDC1Q8N7A1 406 aa16.25■□□□□ 0.19
SYNGAP1-227ENST00000638142 PLCE1Q9P212 2302 aa16.25■□□□□ 0.19
SYNGAP1-227ENST00000638142 IGKV1D-37A0A075B6S9 117 aa16.24■□□□□ 0.19
SYNGAP1-227ENST00000638142 SIAH2O43255 324 aa16.24■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 233.7 ms