RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 COL8A2P25067 703 aa9.12□□□□□ -0.95
CLN3-244ENST00000636147 TNFAIP6P98066 277 aaPredicted RBP9.12□□□□□ -0.95
CLN3-244ENST00000636147 Q0VFX4 171 aa9.12□□□□□ -0.95
CLN3-244ENST00000636147 TMEM136Q6ZRR5 245 aa9.12□□□□□ -0.95
CLN3-244ENST00000636147 WFDC3Q8IUB2 231 aa9.12□□□□□ -0.95
CLN3-244ENST00000636147 SRSF12Q8WXF0 261 aaKnown RBP9.12□□□□□ -0.95
CLN3-244ENST00000636147 DYNLRB1Q9NP97 96 aa9.12□□□□□ -0.95
CLN3-244ENST00000636147 CFAP54Q96N23 3096 aa9.12□□□□□ -0.95
CLN3-244ENST00000636147 A6NDN8 102 aa9.12□□□□□ -0.95
CLN3-244ENST00000636147 C9JCJ5 164 aa9.12□□□□□ -0.95
CLN3-244ENST00000636147 PLP1P60201 277 aa9.12□□□□□ -0.95
CLN3-244ENST00000636147 SELENOTP62341 195 aa9.12□□□□□ -0.95
CLN3-244ENST00000636147 WDR82Q6UXN9 313 aa9.12□□□□□ -0.95
CLN3-244ENST00000636147 WDR86Q86TI4 376 aa9.12□□□□□ -0.95
CLN3-244ENST00000636147 NUDT10Q8NFP7 164 aa9.12□□□□□ -0.95
CLN3-244ENST00000636147 C18orf32Q8TCD1 76 aa9.12□□□□□ -0.95
CLN3-244ENST00000636147 SNRNP40Q96DI7 357 aaKnown RBP9.12□□□□□ -0.95
CLN3-244ENST00000636147 NUDT11Q96G61 164 aa9.12□□□□□ -0.95
CLN3-244ENST00000636147 V9GYV3 84 aa9.12□□□□□ -0.95
CLN3-244ENST00000636147 MED13Q9UHV7 2174 aa9.12□□□□□ -0.95
CLN3-244ENST00000636147 PRSS1P07477 247 aa9.11□□□□□ -0.95
CLN3-244ENST00000636147 WNT2P09544 360 aa9.11□□□□□ -0.95
CLN3-244ENST00000636147 LINC00305Q7Z4B0 112 aa9.11□□□□□ -0.95
CLN3-244ENST00000636147 CCL17Q92583 94 aa9.11□□□□□ -0.95
CLN3-244ENST00000636147 MBNL3Q9NUK0 354 aaKnown RBP9.11□□□□□ -0.95
CLN3-244ENST00000636147 MRPS18CQ9Y3D5 142 aaKnown RBP9.11□□□□□ -0.95
CLN3-244ENST00000636147 H3BUT2 72 aa9.11□□□□□ -0.95
CLN3-244ENST00000636147 CCL8P80075 99 aa9.11□□□□□ -0.95
CLN3-244ENST00000636147 DEFB123Q8N688 67 aa9.11□□□□□ -0.95
CLN3-244ENST00000636147 PERPQ96FX8 193 aa9.11□□□□□ -0.95
CLN3-244ENST00000636147 GRAMD2BQ96HH9 432 aa9.11□□□□□ -0.95
CLN3-244ENST00000636147 AP5S1Q9NUS5 200 aa9.11□□□□□ -0.95
CLN3-244ENST00000636147 PEF1Q9UBV8 284 aaKnown RBP9.11□□□□□ -0.95
CLN3-244ENST00000636147 AREGP15514 252 aa9.11□□□□□ -0.95
CLN3-244ENST00000636147 VMA21Q3ZAQ7 101 aa9.11□□□□□ -0.95
CLN3-244ENST00000636147 NUP35Q8NFH5 326 aa9.11□□□□□ -0.95
CLN3-244ENST00000636147 FAM222BQ8WU58 562 aa9.11□□□□□ -0.95
CLN3-244ENST00000636147 TNFRSF19Q9NS68 423 aa9.11□□□□□ -0.95
CLN3-244ENST00000636147 C15orf61A6NNL5 157 aa9.1□□□□□ -0.95
CLN3-244ENST00000636147 NPIPB11E5RHQ5 1161 aa9.1□□□□□ -0.95
CLN3-244ENST00000636147 SLC25A17O43808 307 aa9.1□□□□□ -0.95
CLN3-244ENST00000636147 GCSHP23434 173 aa9.1□□□□□ -0.95
CLN3-244ENST00000636147 HES1Q14469 280 aa9.1□□□□□ -0.95
CLN3-244ENST00000636147 IFI27L2Q9H2X8 130 aa9.1□□□□□ -0.95
CLN3-244ENST00000636147 SAA2-SAA4A0A096LPE2 208 aa9.1□□□□□ -0.95
CLN3-244ENST00000636147 IGHV1-69-2A0A0G2JMI3 117 aa9.1□□□□□ -0.95
CLN3-244ENST00000636147 SAA2P0DJI9 122 aaPredicted RBP9.1□□□□□ -0.95
CLN3-244ENST00000636147 GOLT1AQ6ZVE7 132 aa9.1□□□□□ -0.95
CLN3-244ENST00000636147 FAM214BQ7L5A3 538 aa9.1□□□□□ -0.95
CLN3-244ENST00000636147 MRPL52Q86TS9 123 aaKnown RBP9.1□□□□□ -0.95
CLN3-244ENST00000636147 SARAFQ96BY9 339 aa9.1□□□□□ -0.95
CLN3-244ENST00000636147 ZNF430Q9H8G1 570 aaPredicted RBP9.1□□□□□ -0.95
CLN3-244ENST00000636147 TRIOO75962 3097 aa9.1□□□□□ -0.95
CLN3-244ENST00000636147 PRUNE2Q8WUY3 3088 aa9.1□□□□□ -0.95
CLN3-244ENST00000636147 LIPFP07098 398 aa9.1□□□□□ -0.95
CLN3-244ENST00000636147 Q6ZSR3 168 aa9.1□□□□□ -0.95
CLN3-244ENST00000636147 WFDC8Q8IUA0 241 aa9.1□□□□□ -0.95
CLN3-244ENST00000636147 Q8NFD4 153 aa9.1□□□□□ -0.95
CLN3-244ENST00000636147 FAM168AQ92567 244 aa9.1□□□□□ -0.95
CLN3-244ENST00000636147 SFXN3Q9BWM7 321 aa9.1□□□□□ -0.95
CLN3-244ENST00000636147 ARRDC1-AS1Q9H2J1 176 aa9.1□□□□□ -0.95
CLN3-244ENST00000636147 HIF1ANQ9NWT6 349 aa9.1□□□□□ -0.95
CLN3-244ENST00000636147 TMEM131Q92545 1883 aa9.09□□□□□ -0.95
CLN3-244ENST00000636147 A0A1W2PRE2 83 aa9.09□□□□□ -0.95
CLN3-244ENST00000636147 C7orf71A4D174 169 aa9.09□□□□□ -0.95
CLN3-244ENST00000636147 APOHP02749 345 aaPredicted RBP9.09□□□□□ -0.95
CLN3-244ENST00000636147 NBEAP1P0C6P0 100 aa9.09□□□□□ -0.95
CLN3-244ENST00000636147 IGHV1-2P23083 117 aa9.09□□□□□ -0.95
CLN3-244ENST00000636147 RIGQ13278 110 aa9.09□□□□□ -0.95
CLN3-244ENST00000636147 C10orf55Q5SWW7 151 aa9.09□□□□□ -0.95
CLN3-244ENST00000636147 CENPVQ7Z7K6 275 aaPredicted RBP9.09□□□□□ -0.95
CLN3-244ENST00000636147 OR52E5Q8NH55 327 aa9.09□□□□□ -0.95
CLN3-244ENST00000636147 IGKV3D-15A0A087WSY6 115 aa9.09□□□□□ -0.95
CLN3-244ENST00000636147 IGLV2-14P01704 120 aa9.09□□□□□ -0.95
CLN3-244ENST00000636147 CECR9P0C854 216 aa9.09□□□□□ -0.95
CLN3-244ENST00000636147 GPR183P32249 361 aa9.09□□□□□ -0.95
CLN3-244ENST00000636147 WDR31Q8NA23 367 aa9.09□□□□□ -0.95
CLN3-244ENST00000636147 C5orf17Q8NAS9 161 aa9.09□□□□□ -0.95
CLN3-244ENST00000636147 DLL1O00548 723 aa9.09□□□□□ -0.95
CLN3-244ENST00000636147 PNKDQ8N490 385 aa9.09□□□□□ -0.95
CLN3-244ENST00000636147 THYN1Q9P016 225 aa9.09□□□□□ -0.95
CLN3-244ENST00000636147 GGTLC3B5MD39 225 aa9.08□□□□□ -0.96
CLN3-244ENST00000636147 J3QR89 54 aa9.08□□□□□ -0.96
CLN3-244ENST00000636147 OR2J3O76001 311 aa9.08□□□□□ -0.96
CLN3-244ENST00000636147 ZC2HC1AQ96GY0 325 aa9.08□□□□□ -0.96
CLN3-244ENST00000636147 C18orf15Q96N68 181 aa9.08□□□□□ -0.96
CLN3-244ENST00000636147 CST9LQ9H4G1 147 aa9.08□□□□□ -0.96
CLN3-244ENST00000636147 RNF7Q9UBF6 113 aa9.08□□□□□ -0.96
CLN3-244ENST00000636147 IGHV2OR16-5A0A0B4J2B6 119 aa9.08□□□□□ -0.96
CLN3-244ENST00000636147 GAGE12BA1L429 117 aa9.08□□□□□ -0.96
CLN3-244ENST00000636147 FXYD7P58549 80 aa9.08□□□□□ -0.96
CLN3-244ENST00000636147 GUCD1Q96NT3 240 aa9.08□□□□□ -0.96
CLN3-244ENST00000636147 MRPS16Q9Y3D3 137 aaKnown RBP9.08□□□□□ -0.96
CLN3-244ENST00000636147 PCNX2A6NKB5 2137 aa9.08□□□□□ -0.96
CLN3-244ENST00000636147 IQCF6A8MYZ5 107 aa9.08□□□□□ -0.96
CLN3-244ENST00000636147 PMS2CLQ68D20 193 aa9.08□□□□□ -0.96
CLN3-244ENST00000636147 SPACA3Q8IXA5 215 aa9.08□□□□□ -0.96
CLN3-244ENST00000636147 CD177Q8N6Q3 437 aa9.08□□□□□ -0.96
CLN3-244ENST00000636147 FAM216BQ8N7L0 139 aa9.08□□□□□ -0.96
CLN3-244ENST00000636147 STXBP6Q8NFX7 210 aa9.08□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms