RNA–Protein interactions for RNA: ENST00000597901.1

LIG1-215, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-215ENST00000597901 SCP2D1Q9UJQ7 156 aa11.2□□□□□ -0.62
LIG1-215ENST00000597901 TMEM56-RWDD3S4R434 201 aa11.2□□□□□ -0.62
LIG1-215ENST00000597901 DNAH7Q8WXX0 4024 aa11.19□□□□□ -0.62
LIG1-215ENST00000597901 IGHV3OR16-13A0A075B7E8 117 aa11.19□□□□□ -0.62
LIG1-215ENST00000597901 IGHV3-74A0A0B4J1X5 117 aa11.19□□□□□ -0.62
LIG1-215ENST00000597901 LCE6AA0A183 80 aa11.19□□□□□ -0.62
LIG1-215ENST00000597901 BSXQ3C1V8 233 aa11.19□□□□□ -0.62
LIG1-215ENST00000597901 ODF3L2Q3SX64 289 aa11.19□□□□□ -0.62
LIG1-215ENST00000597901 FAM90A2PQ658T7 463 aa11.19□□□□□ -0.62
LIG1-215ENST00000597901 ZNF600Q6ZNG1 722 aa11.19□□□□□ -0.62
LIG1-215ENST00000597901 FNDC4Q9H6D8 234 aaPredicted RBP11.19□□□□□ -0.62
LIG1-215ENST00000597901 MRPL36Q9P0J6 103 aaKnown RBP11.19□□□□□ -0.62
LIG1-215ENST00000597901 CACNG5Q9UF02 275 aa11.19□□□□□ -0.62
LIG1-215ENST00000597901 APOHP02749 345 aaPredicted RBP11.18□□□□□ -0.62
LIG1-215ENST00000597901 HTR2BP41595 481 aa11.18□□□□□ -0.62
LIG1-215ENST00000597901 CMC4P56277 68 aaPredicted RBP11.18□□□□□ -0.62
LIG1-215ENST00000597901 TMEM187Q14656 261 aa11.18□□□□□ -0.62
LIG1-215ENST00000597901 LILRB2Q8N423 598 aa11.18□□□□□ -0.62
LIG1-215ENST00000597901 OR4X1Q8NH49 305 aa11.18□□□□□ -0.62
LIG1-215ENST00000597901 TMEM230Q96A57 120 aa11.18□□□□□ -0.62
LIG1-215ENST00000597901 GALNT14Q96FL9 552 aa11.18□□□□□ -0.62
LIG1-215ENST00000597901 GINS3Q9BRX5 216 aa11.18□□□□□ -0.62
LIG1-215ENST00000597901 HEYLQ9NQ87 328 aaPredicted RBP11.18□□□□□ -0.62
LIG1-215ENST00000597901 MCUBQ9NWR8 336 aa11.18□□□□□ -0.62
LIG1-215ENST00000597901 PUS1Q9Y606 427 aaKnown RBP eCLIP11.18□□□□□ -0.62
LIG1-215ENST00000597901 IGKV3-7A0A075B6H7 116 aa11.17□□□□□ -0.62
LIG1-215ENST00000597901 A0A1B0GU03 582 aa11.17□□□□□ -0.62
LIG1-215ENST00000597901 CLN5O75503 358 aa11.17□□□□□ -0.62
LIG1-215ENST00000597901 AKR1C4P17516 323 aa11.17□□□□□ -0.62
LIG1-215ENST00000597901 OPRK1P41145 380 aa11.17□□□□□ -0.62
LIG1-215ENST00000597901 TFPI2P48307 235 aa11.17□□□□□ -0.62
LIG1-215ENST00000597901 IL22RA2Q969J5 263 aa11.17□□□□□ -0.62
LIG1-215ENST00000597901 VSIRQ9H7M9 311 aa11.17□□□□□ -0.62
LIG1-215ENST00000597901 ZFAND3Q9H8U3 227 aa11.17□□□□□ -0.62
LIG1-215ENST00000597901 PRR13Q9NZ81 148 aa11.17□□□□□ -0.62
LIG1-215ENST00000597901 CEBPZOSA8MTT3 80 aa11.16□□□□□ -0.62
LIG1-215ENST00000597901 UBE2CO00762 179 aa11.16□□□□□ -0.62
LIG1-215ENST00000597901 CD5P06127 495 aa11.16□□□□□ -0.62
LIG1-215ENST00000597901 APOC4P55056 127 aa11.16□□□□□ -0.62
LIG1-215ENST00000597901 PYDC2Q56P42 97 aa11.16□□□□□ -0.62
LIG1-215ENST00000597901 Q6ZWC4 215 aa11.16□□□□□ -0.62
LIG1-215ENST00000597901 TCF24Q7RTU0 167 aa11.16□□□□□ -0.62
LIG1-215ENST00000597901 APRG1Q8IVJ8 170 aa11.16□□□□□ -0.62
LIG1-215ENST00000597901 GBGT1Q8N5D6 347 aa11.16□□□□□ -0.62
LIG1-215ENST00000597901 ST8SIA2Q92186 375 aa11.16□□□□□ -0.62
LIG1-215ENST00000597901 TRAV30A0A087WSZ9 112 aa11.15□□□□□ -0.62
LIG1-215ENST00000597901 IGHV3-66A0A0C4DH42 116 aa11.15□□□□□ -0.62
LIG1-215ENST00000597901 KIR2DL5BA0A0G2JN68 375 aa11.15□□□□□ -0.62
LIG1-215ENST00000597901 KIR2DL5BA0A0G2JPC4 375 aa11.15□□□□□ -0.62
LIG1-215ENST00000597901 CCDC160A6NGH7 325 aa11.15□□□□□ -0.62
LIG1-215ENST00000597901 SPRY2O43597 315 aa11.15□□□□□ -0.62
LIG1-215ENST00000597901 DFFBO76075 338 aa11.15□□□□□ -0.62
LIG1-215ENST00000597901 JTBO76095 146 aa11.15□□□□□ -0.62
LIG1-215ENST00000597901 RPL35AP18077 110 aaKnown RBP11.15□□□□□ -0.62
LIG1-215ENST00000597901 NPPCP23582 126 aa11.15□□□□□ -0.62
LIG1-215ENST00000597901 BMI1P35226 326 aa11.15□□□□□ -0.62
LIG1-215ENST00000597901 SUPT4H1P63272 117 aaKnown RBP11.15□□□□□ -0.62
LIG1-215ENST00000597901 PAFAH1B2P68402 229 aa11.15□□□□□ -0.62
LIG1-215ENST00000597901 KLF9Q13886 244 aaPredicted RBP11.15□□□□□ -0.62
LIG1-215ENST00000597901 C2orf83Q53S99 150 aa11.15□□□□□ -0.62
LIG1-215ENST00000597901 NMSQ5H8A3 153 aa11.15□□□□□ -0.62
LIG1-215ENST00000597901 LYZL2Q7Z4W2 148 aa11.15□□□□□ -0.62
LIG1-215ENST00000597901 WFDC3Q8IUB2 231 aa11.15□□□□□ -0.62
LIG1-215ENST00000597901 KIR2DL5AQ8N109 375 aa11.15□□□□□ -0.62
LIG1-215ENST00000597901 STPG3Q8N7X2 389 aa11.15□□□□□ -0.62
LIG1-215ENST00000597901 KIR2DL5BQ8NHK3 375 aa11.15□□□□□ -0.62
LIG1-215ENST00000597901 CACFD1Q9UGQ2 172 aa11.15□□□□□ -0.62
LIG1-215ENST00000597901 TENM2Q9NT68 2774 aa11.15□□□□□ -0.63
LIG1-215ENST00000597901 DYNC2H1Q8NCM8 4307 aaKnown RBP11.15□□□□□ -0.63
LIG1-215ENST00000597901 RPS10-NUDT3A0A1W2PQS6 291 aa11.14□□□□□ -0.63
LIG1-215ENST00000597901 NXPH3O95157 252 aa11.14□□□□□ -0.63
LIG1-215ENST00000597901 IGKV1-17P01599 117 aa11.14□□□□□ -0.63
LIG1-215ENST00000597901 SULT1A3P0DMM9 295 aa11.14□□□□□ -0.63
LIG1-215ENST00000597901 SULT1A4P0DMN0 295 aa11.14□□□□□ -0.63
LIG1-215ENST00000597901 ZNF124Q15973 351 aa11.14□□□□□ -0.63
LIG1-215ENST00000597901 TIGITQ495A1 244 aa11.14□□□□□ -0.63
LIG1-215ENST00000597901 PRSS54Q6PEW0 395 aa11.14□□□□□ -0.63
LIG1-215ENST00000597901 RNASEH2CQ8TDP1 164 aaKnown RBP11.14□□□□□ -0.63
LIG1-215ENST00000597901 TMEM170AQ8WVE7 144 aa11.14□□□□□ -0.63
LIG1-215ENST00000597901 MAP6D1Q9H9H5 199 aa11.14□□□□□ -0.63
LIG1-215ENST00000597901 TP53TG1Q9Y2A0 90 aa11.14□□□□□ -0.63
LIG1-215ENST00000597901 V9GYH0 126 aa11.14□□□□□ -0.63
LIG1-215ENST00000597901 A0A0B4J2A0 478 aa11.13□□□□□ -0.63
LIG1-215ENST00000597901 S100A5P33763 92 aa11.13□□□□□ -0.63
LIG1-215ENST00000597901 FAUP35544 74 aaKnown RBP11.13□□□□□ -0.63
LIG1-215ENST00000597901 CCR6P51684 374 aa11.13□□□□□ -0.63
LIG1-215ENST00000597901 RPL11P62913 178 aaKnown RBP11.13□□□□□ -0.63
LIG1-215ENST00000597901 LGI3Q8N145 548 aa11.13□□□□□ -0.63
LIG1-215ENST00000597901 TOMM5Q8N4H5 51 aa11.13□□□□□ -0.63
LIG1-215ENST00000597901 SLC24A4Q8NFF2 622 aa11.13□□□□□ -0.63
LIG1-215ENST00000597901 RNF183Q96D59 192 aa11.13□□□□□ -0.63
LIG1-215ENST00000597901 MS4A6AQ9H2W1 248 aa11.13□□□□□ -0.63
LIG1-215ENST00000597901 SHPKQ9UHJ6 478 aa11.13□□□□□ -0.63
LIG1-215ENST00000597901 A0A1W2PS18 150 aa11.12□□□□□ -0.63
LIG1-215ENST00000597901 DNASE2O00115 360 aaPredicted RBP11.12□□□□□ -0.63
LIG1-215ENST00000597901 SCGB2A1O75556 95 aa11.12□□□□□ -0.63
LIG1-215ENST00000597901 SLC25A4P12235 298 aa11.12□□□□□ -0.63
LIG1-215ENST00000597901 ANXA3P12429 323 aa11.12□□□□□ -0.63
LIG1-215ENST00000597901 CRYBB3P26998 211 aa11.12□□□□□ -0.63
LIG1-215ENST00000597901 AP3S2P59780 193 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 86.5 ms