RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 SMIM30A4D0T7 59 aa5.1□□□□□ -1.59
VPS53-213ENST00000572334 IFITM5A6NNB3 132 aa5.1□□□□□ -1.59
VPS53-213ENST00000572334 MARCH11A6NNE9 402 aa5.1□□□□□ -1.59
VPS53-213ENST00000572334 LINC00473A8K010 186 aa5.1□□□□□ -1.59
VPS53-213ENST00000572334 PPP5D1E7EU14 171 aa5.1□□□□□ -1.59
VPS53-213ENST00000572334 M0R036 132 aa5.1□□□□□ -1.59
VPS53-213ENST00000572334 M0R1X1 148 aa5.1□□□□□ -1.59
VPS53-213ENST00000572334 CD74P04233 296 aa5.1□□□□□ -1.59
VPS53-213ENST00000572334 CD5P06127 495 aa5.1□□□□□ -1.59
VPS53-213ENST00000572334 OR4E1P0C645 316 aa5.1□□□□□ -1.59
VPS53-213ENST00000572334 LYL1P12980 280 aa5.1□□□□□ -1.59
VPS53-213ENST00000572334 NQO2P16083 231 aa5.1□□□□□ -1.59
VPS53-213ENST00000572334 EDN2P20800 178 aa5.1□□□□□ -1.59
VPS53-213ENST00000572334 PSMB6P28072 239 aa5.1□□□□□ -1.59
VPS53-213ENST00000572334 NPBWR1P48145 328 aa5.1□□□□□ -1.59
VPS53-213ENST00000572334 C2orf76Q3KRA6 126 aa5.1□□□□□ -1.59
VPS53-213ENST00000572334 TMEM177Q53S58 311 aa5.1□□□□□ -1.59
VPS53-213ENST00000572334 ZNF343Q6P1L6 599 aa5.1□□□□□ -1.59
VPS53-213ENST00000572334 LINC00322Q6ZN03 302 aaPredicted RBP5.1□□□□□ -1.59
VPS53-213ENST00000572334 ZNF436-AS1Q8NC38 126 aaPredicted RBP5.1□□□□□ -1.59
VPS53-213ENST00000572334 ADAD2Q8NCV1 583 aaKnown RBP5.1□□□□□ -1.59
VPS53-213ENST00000572334 OR9G4Q8NGQ1 327 aa5.1□□□□□ -1.59
VPS53-213ENST00000572334 OR52I2Q8NH67 350 aa5.1□□□□□ -1.59
VPS53-213ENST00000572334 FAM3DQ96BQ1 224 aa5.1□□□□□ -1.59
VPS53-213ENST00000572334 WDR89Q96FK6 387 aaPredicted RBP5.1□□□□□ -1.59
VPS53-213ENST00000572334 OR4C12Q96R67 309 aa5.1□□□□□ -1.59
VPS53-213ENST00000572334 URM1Q9BTM9 101 aaKnown RBP5.1□□□□□ -1.59
VPS53-213ENST00000572334 ZMAT4Q9H898 229 aa5.1□□□□□ -1.59
VPS53-213ENST00000572334 SLC35D1Q9NTN3 355 aa5.1□□□□□ -1.59
VPS53-213ENST00000572334 SHPKQ9UHJ6 478 aa5.1□□□□□ -1.59
VPS53-213ENST00000572334 TRBV9A0A0B4J1U6 114 aa5.09□□□□□ -1.59
VPS53-213ENST00000572334 A0A1B0GW64 132 aa5.09□□□□□ -1.59
VPS53-213ENST00000572334 A0A1W2PPQ1 181 aa5.09□□□□□ -1.59
VPS53-213ENST00000572334 RAB27BO00194 218 aa5.09□□□□□ -1.59
VPS53-213ENST00000572334 OR2C1O95371 312 aa5.09□□□□□ -1.59
VPS53-213ENST00000572334 IGLV2-14P01704 120 aa5.09□□□□□ -1.59
VPS53-213ENST00000572334 FCGR3AP08637 254 aa5.09□□□□□ -1.59
VPS53-213ENST00000572334 APELAP0DMC3 54 aa5.09□□□□□ -1.59
VPS53-213ENST00000572334 DUTP33316 252 aaKnown RBP5.09□□□□□ -1.59
VPS53-213ENST00000572334 SULT1A2P50226 295 aa5.09□□□□□ -1.59
VPS53-213ENST00000572334 H2BFSP57053 126 aa5.09□□□□□ -1.59
VPS53-213ENST00000572334 SYNJ2BPP57105 145 aa5.09□□□□□ -1.59
VPS53-213ENST00000572334 TAS2R20P59543 309 aa5.09□□□□□ -1.59
VPS53-213ENST00000572334 RAB11BQ15907 218 aa5.09□□□□□ -1.59
VPS53-213ENST00000572334 STEAP1BQ6NZ63 245 aa5.09□□□□□ -1.59
VPS53-213ENST00000572334 PET117Q6UWS5 81 aa5.09□□□□□ -1.59
VPS53-213ENST00000572334 NR2C2APQ86WQ0 139 aa5.09□□□□□ -1.59
VPS53-213ENST00000572334 OR5AP2Q8NGF4 316 aa5.09□□□□□ -1.59
VPS53-213ENST00000572334 OR4A4PQ8NGN8 299 aa5.09□□□□□ -1.59
VPS53-213ENST00000572334 LGALS14Q8TCE9 139 aa5.09□□□□□ -1.59
VPS53-213ENST00000572334 RNASEH2CQ8TDP1 164 aaKnown RBP5.09□□□□□ -1.59
VPS53-213ENST00000572334 RSRP1Q9BUV0 290 aa5.09□□□□□ -1.59
VPS53-213ENST00000572334 ELOVL1Q9BW60 279 aa5.09□□□□□ -1.59
VPS53-213ENST00000572334 ACTR3CQ9C0K3 210 aaPredicted RBP5.09□□□□□ -1.59
VPS53-213ENST00000572334 OR2D2Q9H210 308 aa5.09□□□□□ -1.59
VPS53-213ENST00000572334 ZNF355PQ9NSJ1 428 aa5.09□□□□□ -1.59
VPS53-213ENST00000572334 SLC2A8Q9NY64 477 aa5.09□□□□□ -1.59
VPS53-213ENST00000572334 SIGLEC8Q9NYZ4 499 aa5.09□□□□□ -1.59
VPS53-213ENST00000572334 PEF1Q9UBV8 284 aaKnown RBP5.09□□□□□ -1.59
VPS53-213ENST00000572334 ZNF230Q9UIE0 474 aaPredicted RBP5.09□□□□□ -1.59
VPS53-213ENST00000572334 PIGBOS1A0A0B4J2F0 54 aa5.08□□□□□ -1.6
VPS53-213ENST00000572334 A0A0G2JLM5 398 aa5.08□□□□□ -1.6
VPS53-213ENST00000572334 C13orf42A0A1B0GVH6 325 aa5.08□□□□□ -1.6
VPS53-213ENST00000572334 C7orf77A4D0Y5 90 aa5.08□□□□□ -1.6
VPS53-213ENST00000572334 MSGN1A6NI15 193 aa5.08□□□□□ -1.6
VPS53-213ENST00000572334 ZNF785A8K8V0 405 aa5.08□□□□□ -1.6
VPS53-213ENST00000572334 E7EUB6 86 aa5.08□□□□□ -1.6
VPS53-213ENST00000572334 BMPR1BO00238 502 aa5.08□□□□□ -1.6
VPS53-213ENST00000572334 CIDEAO60543 219 aa5.08□□□□□ -1.6
VPS53-213ENST00000572334 ADAP1O75689 374 aa5.08□□□□□ -1.6
VPS53-213ENST00000572334 CNIH1O95406 144 aa5.08□□□□□ -1.6
VPS53-213ENST00000572334 DIRAS3O95661 229 aa5.08□□□□□ -1.6
VPS53-213ENST00000572334 APOA2P02652 100 aa5.08□□□□□ -1.6
VPS53-213ENST00000572334 PRH1P02810 166 aa5.08□□□□□ -1.6
VPS53-213ENST00000572334 GNB3P16520 340 aa5.08□□□□□ -1.6
VPS53-213ENST00000572334 RPS10P46783 165 aaKnown RBP5.08□□□□□ -1.6
VPS53-213ENST00000572334 LGALS7P47929 136 aa5.08□□□□□ -1.6
VPS53-213ENST00000572334 SULT1A1P50225 295 aa5.08□□□□□ -1.6
VPS53-213ENST00000572334 BRWD1-AS2P59051 145 aa5.08□□□□□ -1.6
VPS53-213ENST00000572334 TNFRSF9Q07011 255 aa5.08□□□□□ -1.6
VPS53-213ENST00000572334 PNRC1Q12796 327 aaPredicted RBP5.08□□□□□ -1.6
VPS53-213ENST00000572334 EIF4EBP1Q13541 118 aaPredicted RBP5.08□□□□□ -1.6
VPS53-213ENST00000572334 CLINT1Q14677 625 aa5.08□□□□□ -1.6
VPS53-213ENST00000572334 PRSS8Q16651 343 aa5.08□□□□□ -1.6
VPS53-213ENST00000572334 IQCJQ1A5X6 159 aa5.08□□□□□ -1.6
VPS53-213ENST00000572334 RNASE12Q5GAN4 147 aaKnown RBP5.08□□□□□ -1.6
VPS53-213ENST00000572334 Q6ZS49 121 aa5.08□□□□□ -1.6
VPS53-213ENST00000572334 LYG2Q86SG7 212 aa5.08□□□□□ -1.6
VPS53-213ENST00000572334 SGPP2Q8IWX5 399 aa5.08□□□□□ -1.6
VPS53-213ENST00000572334 H1FOOQ8IZA3 346 aaPredicted RBP5.08□□□□□ -1.6
VPS53-213ENST00000572334 ARRDC1Q8N5I2 433 aa5.08□□□□□ -1.6
VPS53-213ENST00000572334 OR2D3Q8NGH3 330 aa5.08□□□□□ -1.6
VPS53-213ENST00000572334 BSCL2Q96G97 398 aaPredicted RBP5.08□□□□□ -1.6
VPS53-213ENST00000572334 HARBI1Q96MB7 349 aa5.08□□□□□ -1.6
VPS53-213ENST00000572334 AQP10Q96PS8 301 aa5.08□□□□□ -1.6
VPS53-213ENST00000572334 SLC35B3Q9H1N7 401 aa5.08□□□□□ -1.6
VPS53-213ENST00000572334 RETNQ9HD89 108 aa5.08□□□□□ -1.6
VPS53-213ENST00000572334 CACFD1Q9UGQ2 172 aa5.08□□□□□ -1.6
VPS53-213ENST00000572334 RAB22AQ9UL26 194 aa5.08□□□□□ -1.6
VPS53-213ENST00000572334 FLVCR2Q9UPI3 526 aa5.08□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms