RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 PDCD10Q9BUL8 212 aa8□□□□□ -1.13
VPS39-208ENST00000564994 SLIRPQ9GZT3 109 aaKnown RBP8□□□□□ -1.13
VPS39-208ENST00000564994 GPR132Q9UNW8 380 aa8□□□□□ -1.13
VPS39-208ENST00000564994 C14orf166Q9Y224 244 aaKnown RBP8□□□□□ -1.13
VPS39-208ENST00000564994 PUS1Q9Y606 427 aaKnown RBP eCLIP8□□□□□ -1.13
VPS39-208ENST00000564994 KIR2DL5BA0A0G2JN68 375 aa7.99□□□□□ -1.13
VPS39-208ENST00000564994 KIR2DL5BA0A0G2JPC4 375 aa7.99□□□□□ -1.13
VPS39-208ENST00000564994 A0A0J9YWU9 116 aa7.99□□□□□ -1.13
VPS39-208ENST00000564994 ANKRD20A5PA0PJZ0 165 aa7.99□□□□□ -1.13
VPS39-208ENST00000564994 CRYM-AS1A6NIL9 109 aa7.99□□□□□ -1.13
VPS39-208ENST00000564994 B3GALNT1O75752 331 aa7.99□□□□□ -1.13
VPS39-208ENST00000564994 RPL35AP18077 110 aaKnown RBP7.99□□□□□ -1.13
VPS39-208ENST00000564994 SURF2Q15527 256 aaPredicted RBP7.99□□□□□ -1.13
VPS39-208ENST00000564994 ZNF600Q6ZNG1 722 aa7.99□□□□□ -1.13
VPS39-208ENST00000564994 KIR2DL5AQ8N109 375 aa7.99□□□□□ -1.13
VPS39-208ENST00000564994 GBGT1Q8N5D6 347 aa7.99□□□□□ -1.13
VPS39-208ENST00000564994 OR51S1Q8NGJ8 323 aa7.99□□□□□ -1.13
VPS39-208ENST00000564994 KIR2DL5BQ8NHK3 375 aa7.99□□□□□ -1.13
VPS39-208ENST00000564994 RNASE11Q8TAA1 199 aaKnown RBP7.99□□□□□ -1.13
VPS39-208ENST00000564994 RBPMSQ93062 196 aaKnown RBP7.99□□□□□ -1.13
VPS39-208ENST00000564994 TMEM230Q96A57 120 aa7.99□□□□□ -1.13
VPS39-208ENST00000564994 GPR146Q96CH1 333 aa7.99□□□□□ -1.13
VPS39-208ENST00000564994 SOSTQ9BQB4 213 aa7.99□□□□□ -1.13
VPS39-208ENST00000564994 BCL7BQ9BQE9 202 aa7.99□□□□□ -1.13
VPS39-208ENST00000564994 C6orf62Q9GZU0 229 aaPredicted RBP7.99□□□□□ -1.13
VPS39-208ENST00000564994 VSIRQ9H7M9 311 aa7.99□□□□□ -1.13
VPS39-208ENST00000564994 PRR13Q9NZ81 148 aa7.99□□□□□ -1.13
VPS39-208ENST00000564994 CACNG5Q9UF02 275 aa7.99□□□□□ -1.13
VPS39-208ENST00000564994 TP53TG1Q9Y2A0 90 aa7.99□□□□□ -1.13
VPS39-208ENST00000564994 IGHV3-66A0A0C4DH42 116 aa7.98□□□□□ -1.13
VPS39-208ENST00000564994 H3BMQ9 156 aa7.98□□□□□ -1.13
VPS39-208ENST00000564994 CORTO00230 105 aa7.98□□□□□ -1.13
VPS39-208ENST00000564994 UBE2CO00762 179 aa7.98□□□□□ -1.13
VPS39-208ENST00000564994 SPRY2O43597 315 aa7.98□□□□□ -1.13
VPS39-208ENST00000564994 GSTZ1O43708 216 aaPredicted RBP7.98□□□□□ -1.13
VPS39-208ENST00000564994 CLN5O75503 358 aa7.98□□□□□ -1.13
VPS39-208ENST00000564994 DFFBO76075 338 aa7.98□□□□□ -1.13
VPS39-208ENST00000564994 BMI1P35226 326 aa7.98□□□□□ -1.13
VPS39-208ENST00000564994 OPRK1P41145 380 aa7.98□□□□□ -1.13
VPS39-208ENST00000564994 RPL5P46777 297 aaKnown RBP7.98□□□□□ -1.13
VPS39-208ENST00000564994 SUB1P53999 127 aaKnown RBP eCLIP7.98□□□□□ -1.13
VPS39-208ENST00000564994 SPCS3P61009 180 aa7.98□□□□□ -1.13
VPS39-208ENST00000564994 DHODHQ02127 395 aa7.98□□□□□ -1.13
VPS39-208ENST00000564994 TMEM268Q5VZI3 342 aa7.98□□□□□ -1.13
VPS39-208ENST00000564994 TCF24Q7RTU0 167 aa7.98□□□□□ -1.13
VPS39-208ENST00000564994 FAM219AQ8IW50 185 aa7.98□□□□□ -1.13
VPS39-208ENST00000564994 OR52E5Q8NH55 327 aa7.98□□□□□ -1.13
VPS39-208ENST00000564994 RNF183Q96D59 192 aa7.98□□□□□ -1.13
VPS39-208ENST00000564994 GALNT14Q96FL9 552 aa7.98□□□□□ -1.13
VPS39-208ENST00000564994 GINS3Q9BRX5 216 aa7.98□□□□□ -1.13
VPS39-208ENST00000564994 MAP6D1Q9H9H5 199 aa7.98□□□□□ -1.13
VPS39-208ENST00000564994 ENY2Q9NPA8 101 aa7.98□□□□□ -1.13
VPS39-208ENST00000564994 CTNNBIP1Q9NSA3 81 aaPredicted RBP7.98□□□□□ -1.13
VPS39-208ENST00000564994 IGKV1-17P01599 117 aa7.97□□□□□ -1.13
VPS39-208ENST00000564994 TNFSF8P32971 234 aa7.97□□□□□ -1.13
VPS39-208ENST00000564994 TNFRSF9Q07011 255 aa7.97□□□□□ -1.13
VPS39-208ENST00000564994 TMEM187Q14656 261 aa7.97□□□□□ -1.13
VPS39-208ENST00000564994 LYG2Q86SG7 212 aa7.97□□□□□ -1.13
VPS39-208ENST00000564994 FAM24BQ8N5W8 94 aa7.97□□□□□ -1.13
VPS39-208ENST00000564994 STPG3Q8N7X2 389 aa7.97□□□□□ -1.13
VPS39-208ENST00000564994 OR4X1Q8NH49 305 aa7.97□□□□□ -1.13
VPS39-208ENST00000564994 TMEM170AQ8WVE7 144 aa7.97□□□□□ -1.13
VPS39-208ENST00000564994 PRRT1Q99946 306 aa7.97□□□□□ -1.13
VPS39-208ENST00000564994 RABL2AQ9UBK7 228 aaPredicted RBP7.97□□□□□ -1.13
VPS39-208ENST00000564994 RABL2BQ9UNT1 228 aa7.97□□□□□ -1.13
VPS39-208ENST00000564994 TMEM56-RWDD3S4R434 201 aa7.97□□□□□ -1.13
VPS39-208ENST00000564994 JTBO76095 146 aa7.96□□□□□ -1.14
VPS39-208ENST00000564994 NXPH3O95157 252 aa7.96□□□□□ -1.14
VPS39-208ENST00000564994 HTR2BP41595 481 aa7.96□□□□□ -1.14
VPS39-208ENST00000564994 SUPT4H1P63272 117 aaKnown RBP7.96□□□□□ -1.14
VPS39-208ENST00000564994 TIGITQ495A1 244 aa7.96□□□□□ -1.14
VPS39-208ENST00000564994 MS4A6AQ9H2W1 248 aa7.96□□□□□ -1.14
VPS39-208ENST00000564994 HEYLQ9NQ87 328 aaPredicted RBP7.96□□□□□ -1.14
VPS39-208ENST00000564994 RSL24D1Q9UHA3 163 aaKnown RBP7.96□□□□□ -1.14
VPS39-208ENST00000564994 FABP12A6NFH5 140 aa7.95□□□□□ -1.14
VPS39-208ENST00000564994 IGLC1P0CG04 106 aa7.95□□□□□ -1.14
VPS39-208ENST00000564994 CRYBB3P26998 211 aa7.95□□□□□ -1.14
VPS39-208ENST00000564994 CMC4P56277 68 aaPredicted RBP7.95□□□□□ -1.14
VPS39-208ENST00000564994 PAFAH1B2P68402 229 aa7.95□□□□□ -1.14
VPS39-208ENST00000564994 PMS2P11Q13670 270 aa7.95□□□□□ -1.14
VPS39-208ENST00000564994 C2orf83Q53S99 150 aa7.95□□□□□ -1.14
VPS39-208ENST00000564994 LEMD1Q68G75 181 aa7.95□□□□□ -1.14
VPS39-208ENST00000564994 PRSS54Q6PEW0 395 aa7.95□□□□□ -1.14
VPS39-208ENST00000564994 SLC24A4Q8NFF2 622 aa7.95□□□□□ -1.14
VPS39-208ENST00000564994 MCFD2Q8NI22 146 aa7.95□□□□□ -1.14
VPS39-208ENST00000564994 IL22RA2Q969J5 263 aa7.95□□□□□ -1.14
VPS39-208ENST00000564994 CSTL1Q9H114 145 aa7.95□□□□□ -1.14
VPS39-208ENST00000564994 VPS13DQ5THJ4 4388 aa7.94□□□□□ -1.14
VPS39-208ENST00000564994 KMT2AQ03164 3969 aa7.94□□□□□ -1.14
VPS39-208ENST00000564994 TRAV2A0A0B4J234 112 aa7.94□□□□□ -1.14
VPS39-208ENST00000564994 CXorf65A6NEN9 183 aa7.94□□□□□ -1.14
VPS39-208ENST00000564994 CEBPZOSA8MTT3 80 aa7.94□□□□□ -1.14
VPS39-208ENST00000564994 MPTX1A8MV57 137 aa7.94□□□□□ -1.14
VPS39-208ENST00000564994 NOL3O60936 208 aaKnown RBP7.94□□□□□ -1.14
VPS39-208ENST00000564994 CD5P06127 495 aa7.94□□□□□ -1.14
VPS39-208ENST00000564994 SULT1A3P0DMM9 295 aa7.94□□□□□ -1.14
VPS39-208ENST00000564994 SULT1A4P0DMN0 295 aa7.94□□□□□ -1.14
VPS39-208ENST00000564994 AKR1C4P17516 323 aa7.94□□□□□ -1.14
VPS39-208ENST00000564994 NPPCP23582 126 aa7.94□□□□□ -1.14
VPS39-208ENST00000564994 RND2P52198 227 aa7.94□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms