RNA–Protein interactions for RNA: ENST00000555759.1

SYNE3-204, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 2

Gene SYNE3, Length 5,493 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-204ENST00000555759 PMS2CLQ68D20 193 aa14.61□□□□□ -0.07
SYNE3-204ENST00000555759 FSCN3Q9NQT6 498 aa14.61□□□□□ -0.07
SYNE3-204ENST00000555759 PPIAL4CA0A0B4J2A2 164 aa14.61□□□□□ -0.07
SYNE3-204ENST00000555759 PPIAL4GP0DN37 164 aa14.61□□□□□ -0.07
SYNE3-204ENST00000555759 HGFACQ04756 655 aa14.61□□□□□ -0.07
SYNE3-204ENST00000555759 ATP5G2Q06055 141 aa14.61□□□□□ -0.07
SYNE3-204ENST00000555759 PYYP10082 97 aa14.61□□□□□ -0.07
SYNE3-204ENST00000555759 PVRIGQ6DKI7 326 aa14.61□□□□□ -0.07
SYNE3-204ENST00000555759 LTBP4Q8N2S1 1624 aa14.61□□□□□ -0.07
SYNE3-204ENST00000555759 ZNF815PA8K554 130 aa14.61□□□□□ -0.07
SYNE3-204ENST00000555759 OR9G9P0C7N8 305 aa14.61□□□□□ -0.07
SYNE3-204ENST00000555759 DUTP33316 252 aaKnown RBP14.61□□□□□ -0.07
SYNE3-204ENST00000555759 DYNLRB2Q8TF09 96 aa14.61□□□□□ -0.07
SYNE3-204ENST00000555759 YAE1D1Q9NRH1 226 aa14.61□□□□□ -0.07
SYNE3-204ENST00000555759 CHTOPQ9Y3Y2 248 aaKnown RBP14.61□□□□□ -0.07
SYNE3-204ENST00000555759 SAA1P0DJI8 122 aaPredicted RBP14.6□□□□□ -0.07
SYNE3-204ENST00000555759 KIR3DL3Q8N743 410 aa14.6□□□□□ -0.07
SYNE3-204ENST00000555759 DDB2Q92466 427 aa14.6□□□□□ -0.07
SYNE3-204ENST00000555759 PARP14Q460N5 1801 aa14.6□□□□□ -0.07
SYNE3-204ENST00000555759 F2Z2F3 143 aa14.6□□□□□ -0.07
SYNE3-204ENST00000555759 CRYGSP22914 178 aa14.6□□□□□ -0.07
SYNE3-204ENST00000555759 SUMO2P61956 95 aaKnown RBP14.6□□□□□ -0.07
SYNE3-204ENST00000555759 SLC25A45Q8N413 288 aa14.6□□□□□ -0.07
SYNE3-204ENST00000555759 DLX4Q92988 240 aaPredicted RBP14.6□□□□□ -0.07
SYNE3-204ENST00000555759 MRPS18CQ9Y3D5 142 aaKnown RBP14.6□□□□□ -0.07
SYNE3-204ENST00000555759 IGKV1-12A0A0C4DH73 117 aa14.6□□□□□ -0.07
SYNE3-204ENST00000555759 IGKV1D-12P01611 117 aa14.6□□□□□ -0.07
SYNE3-204ENST00000555759 Q6ZS49 121 aa14.6□□□□□ -0.07
SYNE3-204ENST00000555759 KNTC1P50748 2209 aa14.6□□□□□ -0.07
SYNE3-204ENST00000555759 TRIP6Q15654 476 aaKnown RBP14.59□□□□□ -0.07
SYNE3-204ENST00000555759 MORN2Q502X0 79 aa14.59□□□□□ -0.07
SYNE3-204ENST00000555759 GLRXP35754 106 aa14.59□□□□□ -0.07
SYNE3-204ENST00000555759 FAM106AQ4KMX7 169 aa14.59□□□□□ -0.07
SYNE3-204ENST00000555759 C1orf210Q8IVY1 113 aa14.59□□□□□ -0.07
SYNE3-204ENST00000555759 FOXA2Q9Y261 457 aaPredicted RBP14.59□□□□□ -0.07
SYNE3-204ENST00000555759 RFNGQ9Y644 331 aa14.59□□□□□ -0.07
SYNE3-204ENST00000555759 ZNF837Q96EG3 531 aaPredicted RBP14.59□□□□□ -0.07
SYNE3-204ENST00000555759 NPFFO15130 113 aa14.59□□□□□ -0.07
SYNE3-204ENST00000555759 TMEM249Q2WGJ8 235 aa14.59□□□□□ -0.07
SYNE3-204ENST00000555759 KLF17Q5JT82 389 aaPredicted RBP14.59□□□□□ -0.07
SYNE3-204ENST00000555759 C1orf162Q8NEQ5 155 aaPredicted RBP14.59□□□□□ -0.07
SYNE3-204ENST00000555759 IGLC2P0DOY2 106 aa14.58□□□□□ -0.07
SYNE3-204ENST00000555759 IGLC3P0DOY3 106 aa14.58□□□□□ -0.07
SYNE3-204ENST00000555759 SAA2-SAA4A0A096LPE2 208 aa14.58□□□□□ -0.08
SYNE3-204ENST00000555759 SAA2P0DJI9 122 aaPredicted RBP14.58□□□□□ -0.08
SYNE3-204ENST00000555759 PAX1P15863 534 aa14.58□□□□□ -0.08
SYNE3-204ENST00000555759 C21orf62Q9NYP8 219 aa14.58□□□□□ -0.08
SYNE3-204ENST00000555759 LINC00312Q9Y6C7 94 aa14.58□□□□□ -0.08
SYNE3-204ENST00000555759 TRAV5A0A0B4J249 113 aa14.58□□□□□ -0.08
SYNE3-204ENST00000555759 IGKV1-5P01602 117 aa14.58□□□□□ -0.08
SYNE3-204ENST00000555759 CD33P20138 364 aa14.58□□□□□ -0.08
SYNE3-204ENST00000555759 SSBP2P81877 361 aaPredicted RBP14.58□□□□□ -0.08
SYNE3-204ENST00000555759 NUP35Q8NFH5 326 aa14.58□□□□□ -0.08
SYNE3-204ENST00000555759 NAA38Q9BRA0 125 aaKnown RBP14.58□□□□□ -0.08
SYNE3-204ENST00000555759 MRPL20Q9BYC9 149 aaKnown RBP14.58□□□□□ -0.08
SYNE3-204ENST00000555759 PATJQ8NI35 1801 aa14.58□□□□□ -0.08
SYNE3-204ENST00000555759 MAP1BP46821 2468 aaKnown RBP14.58□□□□□ -0.08
SYNE3-204ENST00000555759 TRBV6-6A0A0A6YYG2 114 aa14.57□□□□□ -0.08
SYNE3-204ENST00000555759 ALPK2Q86TB3 2170 aa14.57□□□□□ -0.08
SYNE3-204ENST00000555759 TMPRSS3P57727 454 aa14.57□□□□□ -0.08
SYNE3-204ENST00000555759 PSG7Q13046 419 aa14.57□□□□□ -0.08
SYNE3-204ENST00000555759 CEACAM4O75871 244 aa14.57□□□□□ -0.08
SYNE3-204ENST00000555759 IGHV4-39P01824 125 aa14.57□□□□□ -0.08
SYNE3-204ENST00000555759 MGST2Q99735 147 aa14.57□□□□□ -0.08
SYNE3-204ENST00000555759 SLC50A1Q9BRV3 221 aa14.57□□□□□ -0.08
SYNE3-204ENST00000555759 ERG28Q9UKR5 140 aa14.57□□□□□ -0.08
SYNE3-204ENST00000555759 RNASE1P07998 156 aaKnown RBP14.57□□□□□ -0.08
SYNE3-204ENST00000555759 RNFT1Q5M7Z0 435 aa14.57□□□□□ -0.08
SYNE3-204ENST00000555759 SFTA2Q6UW10 78 aa14.57□□□□□ -0.08
SYNE3-204ENST00000555759 SMRP1Q8NCR6 262 aa14.57□□□□□ -0.08
SYNE3-204ENST00000555759 PF4V1P10720 104 aa14.56□□□□□ -0.08
SYNE3-204ENST00000555759 FLVCR1-AS1Q8TAF5 88 aa14.56□□□□□ -0.08
SYNE3-204ENST00000555759 NYNRINQ9P2P1 1898 aaKnown RBP14.56□□□□□ -0.08
SYNE3-204ENST00000555759 SPINK8P0C7L1 97 aa14.56□□□□□ -0.08
SYNE3-204ENST00000555759 PLNP26678 52 aa14.56□□□□□ -0.08
SYNE3-204ENST00000555759 RHOGP84095 191 aa14.56□□□□□ -0.08
SYNE3-204ENST00000555759 DCTN5Q9BTE1 182 aa14.56□□□□□ -0.08
SYNE3-204ENST00000555759 TRAV16A0A0A6YYK6 109 aaPredicted RBP14.56□□□□□ -0.08
SYNE3-204ENST00000555759 ADAMTSL5Q6ZMM2 481 aa14.56□□□□□ -0.08
SYNE3-204ENST00000555759 OR13C6PQ8NH95 151 aa14.56□□□□□ -0.08
SYNE3-204ENST00000555759 TNFRSF18Q9Y5U5 241 aa14.56□□□□□ -0.08
SYNE3-204ENST00000555759 C8orf46Q8TAG6 207 aa14.55□□□□□ -0.08
SYNE3-204ENST00000555759 SMAD7O15105 426 aaKnown RBP14.55□□□□□ -0.08
SYNE3-204ENST00000555759 CDKN1AP38936 164 aa14.55□□□□□ -0.08
SYNE3-204ENST00000555759 RTN4RL2Q86UN3 420 aa14.55□□□□□ -0.08
SYNE3-204ENST00000555759 FBXL7Q9UJT9 491 aa14.55□□□□□ -0.08
SYNE3-204ENST00000555759 ATXN8Q156A1 80 aa14.55□□□□□ -0.08
SYNE3-204ENST00000555759 SEPSECSQ9HD40 501 aaKnown RBP14.55□□□□□ -0.08
SYNE3-204ENST00000555759 IGKV3D-15A0A087WSY6 115 aa14.55□□□□□ -0.08
SYNE3-204ENST00000555759 IGKV3-15P01624 115 aa14.55□□□□□ -0.08
SYNE3-204ENST00000555759 YPEL3P61236 119 aaPredicted RBP14.55□□□□□ -0.08
SYNE3-204ENST00000555759 ARPC1AQ92747 370 aa14.55□□□□□ -0.08
SYNE3-204ENST00000555759 RAX2Q96IS3 184 aa14.55□□□□□ -0.08
SYNE3-204ENST00000555759 TIMP4Q99727 224 aa14.55□□□□□ -0.08
SYNE3-204ENST00000555759 FBXL15Q9H469 300 aa14.55□□□□□ -0.08
SYNE3-204ENST00000555759 SBF2Q86WG5 1849 aa14.54□□□□□ -0.08
SYNE3-204ENST00000555759 DOCK4Q8N1I0 1966 aa14.54□□□□□ -0.08
SYNE3-204ENST00000555759 SNRPD3P62318 126 aaKnown RBP14.54□□□□□ -0.08
SYNE3-204ENST00000555759 SPATA31B1PQ5VZV4 182 aa14.54□□□□□ -0.08
SYNE3-204ENST00000555759 LAGE3Q14657 143 aa14.54□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 70.7 ms