RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 CD300CQ08708 224 aa12.49□□□□□ -0.41
PRPF40A-212ENST00000545856 OR8G2PQ6IF36 304 aa12.49□□□□□ -0.41
PRPF40A-212ENST00000545856 OR4X1Q8NH49 305 aa12.49□□□□□ -0.41
PRPF40A-212ENST00000545856 EEF1AKMT3Q96AZ1 226 aa12.49□□□□□ -0.41
PRPF40A-212ENST00000545856 UBE2E2Q96LR5 201 aa12.49□□□□□ -0.41
PRPF40A-212ENST00000545856 ATP5SQ99766 215 aa12.49□□□□□ -0.41
PRPF40A-212ENST00000545856 NPVFQ9HCQ7 196 aa12.49□□□□□ -0.41
PRPF40A-212ENST00000545856 UQCC1Q9NVA1 299 aa12.49□□□□□ -0.41
PRPF40A-212ENST00000545856 LINC00527Q9UJ94 153 aa12.49□□□□□ -0.41
PRPF40A-212ENST00000545856 KANTRA0A1W2PQU2 76 aa12.48□□□□□ -0.41
PRPF40A-212ENST00000545856 JTBO76095 146 aa12.48□□□□□ -0.41
PRPF40A-212ENST00000545856 MFAP4P55083 255 aa12.48□□□□□ -0.41
PRPF40A-212ENST00000545856 ATP5G2Q06055 141 aa12.48□□□□□ -0.41
PRPF40A-212ENST00000545856 C15orf32Q32M92 178 aa12.48□□□□□ -0.41
PRPF40A-212ENST00000545856 KCNIP2Q9NS61 270 aa12.48□□□□□ -0.41
PRPF40A-212ENST00000545856 C21orf62Q9NYP8 219 aa12.48□□□□□ -0.41
PRPF40A-212ENST00000545856 BORCS7-ASMTA0A0B4J1R7 106 aa12.47□□□□□ -0.41
PRPF40A-212ENST00000545856 BCL2L11O43521 198 aa12.47□□□□□ -0.41
PRPF40A-212ENST00000545856 OR2J3O76001 311 aa12.47□□□□□ -0.41
PRPF40A-212ENST00000545856 FABP1P07148 127 aa12.47□□□□□ -0.41
PRPF40A-212ENST00000545856 CDX1P47902 265 aaPredicted RBP12.47□□□□□ -0.41
PRPF40A-212ENST00000545856 NHLH2Q02577 135 aa12.47□□□□□ -0.41
PRPF40A-212ENST00000545856 RAB31Q13636 194 aa12.47□□□□□ -0.41
PRPF40A-212ENST00000545856 SPSB3Q6PJ21 355 aa12.47□□□□□ -0.41
PRPF40A-212ENST00000545856 TMEM144Q7Z5S9 345 aa12.47□□□□□ -0.41
PRPF40A-212ENST00000545856 HAPLN4Q86UW8 402 aa12.47□□□□□ -0.41
PRPF40A-212ENST00000545856 C9orf62Q8N4C0 152 aa12.47□□□□□ -0.41
PRPF40A-212ENST00000545856 OR5AU1Q8NGC0 362 aa12.47□□□□□ -0.41
PRPF40A-212ENST00000545856 SCARB1Q8WTV0 552 aa12.47□□□□□ -0.41
PRPF40A-212ENST00000545856 ARPC5LQ9BPX5 153 aa12.47□□□□□ -0.41
PRPF40A-212ENST00000545856 FNDC4Q9H6D8 234 aaPredicted RBP12.47□□□□□ -0.41
PRPF40A-212ENST00000545856 FBXL17Q9UF56 701 aa12.47□□□□□ -0.41
PRPF40A-212ENST00000545856 CLN5O75503 358 aa12.46□□□□□ -0.41
PRPF40A-212ENST00000545856 IFNA5P01569 189 aa12.46□□□□□ -0.41
PRPF40A-212ENST00000545856 EIF2B2P49770 351 aaKnown RBP12.46□□□□□ -0.41
PRPF40A-212ENST00000545856 RUNX1Q01196 453 aa12.46□□□□□ -0.41
PRPF40A-212ENST00000545856 ZNF329Q86UD4 541 aa12.46□□□□□ -0.41
PRPF40A-212ENST00000545856 TMEM217Q8N7C4 229 aa12.46□□□□□ -0.41
PRPF40A-212ENST00000545856 THAP8Q8NA92 274 aa12.46□□□□□ -0.41
PRPF40A-212ENST00000545856 UBAC2Q8NBM4 344 aa12.46□□□□□ -0.41
PRPF40A-212ENST00000545856 ZNF502Q8TBZ5 544 aa12.46□□□□□ -0.41
PRPF40A-212ENST00000545856 BSCL2Q96G97 398 aaPredicted RBP12.46□□□□□ -0.41
PRPF40A-212ENST00000545856 ARL6Q9H0F7 186 aa12.46□□□□□ -0.41
PRPF40A-212ENST00000545856 NDUFB8O95169 186 aa12.45□□□□□ -0.42
PRPF40A-212ENST00000545856 CFDP00746 253 aaPredicted RBP12.45□□□□□ -0.42
PRPF40A-212ENST00000545856 CXCL2P19875 107 aa12.45□□□□□ -0.42
PRPF40A-212ENST00000545856 SELENOTP62341 195 aa12.45□□□□□ -0.42
PRPF40A-212ENST00000545856 AKR1C1Q04828 323 aa12.45□□□□□ -0.42
PRPF40A-212ENST00000545856 ARL16Q0P5N6 197 aa12.45□□□□□ -0.42
PRPF40A-212ENST00000545856 GAMTQ14353 236 aa12.45□□□□□ -0.42
PRPF40A-212ENST00000545856 LGALSLQ3ZCW2 172 aaPredicted RBP12.45□□□□□ -0.42
PRPF40A-212ENST00000545856 ZNF343Q6P1L6 599 aa12.45□□□□□ -0.42
PRPF40A-212ENST00000545856 TEPPQ6URK8 271 aa12.45□□□□□ -0.42
PRPF40A-212ENST00000545856 TMUB2Q71RG4 321 aa12.45□□□□□ -0.42
PRPF40A-212ENST00000545856 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP12.45□□□□□ -0.42
PRPF40A-212ENST00000545856 WDR83OSQ9Y284 106 aa12.45□□□□□ -0.42
PRPF40A-212ENST00000545856 LSM4Q9Y4Z0 139 aaKnown RBP12.45□□□□□ -0.42
PRPF40A-212ENST00000545856 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP12.44□□□□□ -0.42
PRPF40A-212ENST00000545856 PRH1P02810 166 aa12.44□□□□□ -0.42
PRPF40A-212ENST00000545856 MDKP21741 143 aaPredicted RBP12.44□□□□□ -0.42
PRPF40A-212ENST00000545856 ACSM6Q6P461 480 aa12.44□□□□□ -0.42
PRPF40A-212ENST00000545856 ZNF491Q8N8L2 437 aa12.44□□□□□ -0.42
PRPF40A-212ENST00000545856 TMEM158Q8WZ71 300 aa12.44□□□□□ -0.42
PRPF40A-212ENST00000545856 MS4A10Q96PG2 267 aa12.44□□□□□ -0.42
PRPF40A-212ENST00000545856 GNG7O60262 68 aa12.43□□□□□ -0.42
PRPF40A-212ENST00000545856 LGALS1P09382 135 aaKnown RBP12.43□□□□□ -0.42
PRPF40A-212ENST00000545856 RND2P52198 227 aa12.43□□□□□ -0.42
PRPF40A-212ENST00000545856 CLINT1Q14677 625 aa12.43□□□□□ -0.42
PRPF40A-212ENST00000545856 TREML4Q6UXN2 200 aa12.43□□□□□ -0.42
PRPF40A-212ENST00000545856 C19orf35Q6ZS72 473 aa12.43□□□□□ -0.42
PRPF40A-212ENST00000545856 SLC51BQ86UW2 128 aa12.43□□□□□ -0.42
PRPF40A-212ENST00000545856 STOML3Q8TAV4 291 aa12.43□□□□□ -0.42
PRPF40A-212ENST00000545856 GNPNAT1Q96EK6 184 aaPredicted RBP12.43□□□□□ -0.42
PRPF40A-212ENST00000545856 TRGV9Q99603 122 aa12.43□□□□□ -0.42
PRPF40A-212ENST00000545856 WDR61Q9GZS3 305 aaKnown RBP12.43□□□□□ -0.42
PRPF40A-212ENST00000545856 TIMM9Q9Y5J7 89 aa12.43□□□□□ -0.42
PRPF40A-212ENST00000545856 TSSC4Q9Y5U2 329 aaPredicted RBP12.43□□□□□ -0.42
PRPF40A-212ENST00000545856 COL6A5A8TX70 2615 aa12.43□□□□□ -0.42
PRPF40A-212ENST00000545856 MFSD2BA6NFX1 497 aa12.43□□□□□ -0.42
PRPF40A-212ENST00000545856 C17orf112F2Z3M2 114 aa12.43□□□□□ -0.42
PRPF40A-212ENST00000545856 YPEL3P61236 119 aaPredicted RBP12.43□□□□□ -0.42
PRPF40A-212ENST00000545856 KIAA0141Q14154 515 aaPredicted RBP12.43□□□□□ -0.42
PRPF40A-212ENST00000545856 EIF5AL1Q6IS14 154 aaKnown RBP12.43□□□□□ -0.42
PRPF40A-212ENST00000545856 PRIMA1Q86XR5 153 aa12.43□□□□□ -0.42
PRPF40A-212ENST00000545856 SCGB1C1Q8TD33 95 aa12.43□□□□□ -0.42
PRPF40A-212ENST00000545856 C4orf3Q8WVX3 66 aa12.43□□□□□ -0.42
PRPF40A-212ENST00000545856 PSMG3Q9BT73 122 aaPredicted RBP12.43□□□□□ -0.42
PRPF40A-212ENST00000545856 KLK15Q9H2R5 256 aa12.43□□□□□ -0.42
PRPF40A-212ENST00000545856 UBE2L5PA0A1B0GUS4 154 aa12.42□□□□□ -0.42
PRPF40A-212ENST00000545856 SMCO3A2RU48 225 aa12.42□□□□□ -0.42
PRPF40A-212ENST00000545856 NUPL2O15504 423 aaKnown RBP12.42□□□□□ -0.42
PRPF40A-212ENST00000545856 RPLP1P05386 114 aaKnown RBP12.42□□□□□ -0.42
PRPF40A-212ENST00000545856 IGLC1P0CG04 106 aa12.42□□□□□ -0.42
PRPF40A-212ENST00000545856 TPT1P13693 172 aaKnown RBP12.42□□□□□ -0.42
PRPF40A-212ENST00000545856 RELQ04864 619 aaPredicted RBP12.42□□□□□ -0.42
PRPF40A-212ENST00000545856 Q56UQ5 140 aa12.42□□□□□ -0.42
PRPF40A-212ENST00000545856 PXDC1Q5TGL8 231 aa12.42□□□□□ -0.42
PRPF40A-212ENST00000545856 LAMTOR1Q6IAA8 161 aa12.42□□□□□ -0.42
PRPF40A-212ENST00000545856 TAF15Q92804 592 aaKnown RBP eCLIP12.42□□□□□ -0.428e-10■□□□□ 10.2
PRPF40A-212ENST00000545856 ACY3Q96HD9 319 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 170.7 ms