RNA–Protein interactions for RNA: ENST00000542033.5

USP28-210, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 852 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-210ENST00000542033 CCL21O00585 134 aa2.35□□□□□ -2.03
USP28-210ENST00000542033 GEMIN2O14893 280 aaKnown RBP2.35□□□□□ -2.03
USP28-210ENST00000542033 ZNF682O95780 498 aa2.35□□□□□ -2.03
USP28-210ENST00000542033 CATP04040 527 aaKnown RBP2.35□□□□□ -2.03
USP28-210ENST00000542033 IL3P08700 152 aa2.35□□□□□ -2.03
USP28-210ENST00000542033 KRTAP1-4P0C5Y4 121 aa2.35□□□□□ -2.03
USP28-210ENST00000542033 LINC00869P0C866 280 aa2.35□□□□□ -2.03
USP28-210ENST00000542033 RBMY1CP0DJD4 496 aa2.35□□□□□ -2.03
USP28-210ENST00000542033 PTHLHP12272 177 aa2.35□□□□□ -2.03
USP28-210ENST00000542033 PRTN3P24158 256 aa2.35□□□□□ -2.03
USP28-210ENST00000542033 CNTFRP26992 372 aa2.35□□□□□ -2.03
USP28-210ENST00000542033 BLVRBP30043 206 aaPredicted RBP2.35□□□□□ -2.03
USP28-210ENST00000542033 GZMMP51124 257 aa2.35□□□□□ -2.03
USP28-210ENST00000542033 ZNF121P58317 390 aaPredicted RBP2.35□□□□□ -2.03
USP28-210ENST00000542033 SMIM11AP58511 58 aa2.35□□□□□ -2.03
USP28-210ENST00000542033 C1QTNF8P60827 252 aa2.35□□□□□ -2.03
USP28-210ENST00000542033 LYZP61626 148 aa2.35□□□□□ -2.03
USP28-210ENST00000542033 SNRPGP62308 76 aaKnown RBP2.35□□□□□ -2.03
USP28-210ENST00000542033 RPL31P62899 125 aaKnown RBP2.35□□□□□ -2.03
USP28-210ENST00000542033 FMODQ06828 376 aa2.35□□□□□ -2.03
USP28-210ENST00000542033 Q0VG73 95 aa2.35□□□□□ -2.03
USP28-210ENST00000542033 FAM53BQ14153 422 aa2.35□□□□□ -2.03
USP28-210ENST00000542033 TAL2Q16559 108 aa2.35□□□□□ -2.03
USP28-210ENST00000542033 SLC25A35Q3KQZ1 300 aa2.35□□□□□ -2.03
USP28-210ENST00000542033 OR10J3Q5JRS4 329 aa2.35□□□□□ -2.03
USP28-210ENST00000542033 PAGE3Q5JUK9 113 aa2.35□□□□□ -2.03
USP28-210ENST00000542033 VAX1Q5SQQ9 334 aa2.35□□□□□ -2.03
USP28-210ENST00000542033 ZNF678Q5SXM1 525 aa2.35□□□□□ -2.03
USP28-210ENST00000542033 BVES-AS1Q5T3Y7 98 aa2.35□□□□□ -2.03
USP28-210ENST00000542033 DUX4L9Q6RFH8 374 aaPredicted RBP2.35□□□□□ -2.03
USP28-210ENST00000542033 Q6ZSR3 168 aa2.35□□□□□ -2.03
USP28-210ENST00000542033 Q6ZT83 130 aa2.35□□□□□ -2.03
USP28-210ENST00000542033 CMC1Q7Z7K0 106 aa2.35□□□□□ -2.03
USP28-210ENST00000542033 PRR22Q8IZ63 422 aa2.35□□□□□ -2.03
USP28-210ENST00000542033 ZNF101Q8IZC7 436 aa2.35□□□□□ -2.03
USP28-210ENST00000542033 ZNF709Q8N972 641 aa2.35□□□□□ -2.03
USP28-210ENST00000542033 GATD1Q8NB37 220 aa2.35□□□□□ -2.03
USP28-210ENST00000542033 OR4K17Q8NGC6 315 aa2.35□□□□□ -2.03
USP28-210ENST00000542033 OR10P1Q8NGE3 313 aa2.35□□□□□ -2.03
USP28-210ENST00000542033 OR8B12Q8NGG6 310 aa2.35□□□□□ -2.03
USP28-210ENST00000542033 OR4C16Q8NGL9 310 aa2.35□□□□□ -2.03
USP28-210ENST00000542033 OR4C13Q8NGP0 309 aa2.35□□□□□ -2.03
USP28-210ENST00000542033 OR5AR1Q8NGP9 310 aa2.35□□□□□ -2.03
USP28-210ENST00000542033 OR1L8Q8NGR8 309 aa2.35□□□□□ -2.03
USP28-210ENST00000542033 OR52P1PQ8NH57 321 aa2.35□□□□□ -2.03
USP28-210ENST00000542033 VSTM2AQ8TAG5 236 aa2.35□□□□□ -2.03
USP28-210ENST00000542033 STAG3L4Q8TBR4 150 aa2.35□□□□□ -2.03
USP28-210ENST00000542033 SLC37A2Q8TED4 501 aa2.35□□□□□ -2.03
USP28-210ENST00000542033 OR5P2Q8WZ92 322 aa2.35□□□□□ -2.03
USP28-210ENST00000542033 RDH5Q92781 318 aa2.35□□□□□ -2.03
USP28-210ENST00000542033 FGF11Q92914 225 aa2.35□□□□□ -2.03
USP28-210ENST00000542033 TMEM54Q969K7 222 aa2.35□□□□□ -2.03
USP28-210ENST00000542033 BORCS7Q96B45 105 aa2.35□□□□□ -2.03
USP28-210ENST00000542033 AQP10Q96PS8 301 aa2.35□□□□□ -2.03
USP28-210ENST00000542033 SDF2Q99470 211 aa2.35□□□□□ -2.03
USP28-210ENST00000542033 KIR2DL4Q99706 377 aa2.35□□□□□ -2.03
USP28-210ENST00000542033 ATP5SQ99766 215 aa2.35□□□□□ -2.03
USP28-210ENST00000542033 RASL11BQ9BPW5 248 aa2.35□□□□□ -2.03
USP28-210ENST00000542033 PRADC1Q9BSG0 188 aa2.35□□□□□ -2.03
USP28-210ENST00000542033 RTBDNQ9BSG5 229 aaPredicted RBP2.35□□□□□ -2.03
USP28-210ENST00000542033 PAXXQ9BUH6 204 aa2.35□□□□□ -2.03
USP28-210ENST00000542033 TMEM59Q9BXS4 323 aa2.35□□□□□ -2.03
USP28-210ENST00000542033 OR2H1Q9GZK4 316 aa2.35□□□□□ -2.03
USP28-210ENST00000542033 CYTL1Q9NRR1 136 aa2.35□□□□□ -2.03
USP28-210ENST00000542033 IDI2-AS1Q9NZ38 188 aa2.35□□□□□ -2.03
USP28-210ENST00000542033 Q9UF83 564 aa2.35□□□□□ -2.03
USP28-210ENST00000542033 MED31Q9Y3C7 131 aa2.35□□□□□ -2.03
USP28-210ENST00000542033 KIF25-AS1Q9Y6Z4 181 aa2.35□□□□□ -2.03
USP28-210ENST00000542033 V9GY05 133 aa2.35□□□□□ -2.03
USP28-210ENST00000542033 STRCQ7RTU9 1775 aa2.35□□□□□ -2.03
USP28-210ENST00000542033 ITGB4P16144 1822 aa2.35□□□□□ -2.03
USP28-210ENST00000542033 AHDC1Q5TGY3 1603 aaPredicted RBP2.35□□□□□ -2.03
USP28-210ENST00000542033 ATG2AQ2TAZ0 1938 aa2.34□□□□□ -2.03
USP28-210ENST00000542033 TNRC6CQ9HCJ0 1690 aaKnown RBP2.34□□□□□ -2.03
USP28-210ENST00000542033 ADAMTS7Q9UKP4 1686 aa2.34□□□□□ -2.03
USP28-210ENST00000542033 TECPR2O15040 1411 aa2.34□□□□□ -2.03
USP28-210ENST00000542033 TRAV9-1A0A075B6T8 112 aa2.34□□□□□ -2.03
USP28-210ENST00000542033 IGHV3OR16-13A0A075B7E8 117 aa2.34□□□□□ -2.03
USP28-210ENST00000542033 A8MT66 165 aa2.34□□□□□ -2.03
USP28-210ENST00000542033 C9JQL5 133 aa2.34□□□□□ -2.03
USP28-210ENST00000542033 NCR2O95944 276 aa2.34□□□□□ -2.03
USP28-210ENST00000542033 HRASP01112 189 aa2.34□□□□□ -2.03
USP28-210ENST00000542033 KRASP01116 189 aa2.34□□□□□ -2.03
USP28-210ENST00000542033 GYPAP02724 150 aa2.34□□□□□ -2.03
USP28-210ENST00000542033 GIG44P09565 113 aaPredicted RBP2.34□□□□□ -2.03
USP28-210ENST00000542033 ZNF286BP0CG31 522 aa2.34□□□□□ -2.03
USP28-210ENST00000542033 IFITM1P13164 125 aa2.34□□□□□ -2.03
USP28-210ENST00000542033 RPL7P18124 248 aaKnown RBP2.34□□□□□ -2.03
USP28-210ENST00000542033 NTF3P20783 257 aa2.34□□□□□ -2.03
USP28-210ENST00000542033 LPAR6P43657 344 aa2.34□□□□□ -2.03
USP28-210ENST00000542033 ZNF83P51522 516 aa2.34□□□□□ -2.03
USP28-210ENST00000542033 P2RX1P51575 399 aa2.34□□□□□ -2.03
USP28-210ENST00000542033 HLA-DRB3P79483 266 aa2.34□□□□□ -2.03
USP28-210ENST00000542033 ZNF92Q03936 586 aa2.34□□□□□ -2.03
USP28-210ENST00000542033 CD164Q04900 197 aa2.34□□□□□ -2.03
USP28-210ENST00000542033 FOXF1Q12946 379 aa2.34□□□□□ -2.03
USP28-210ENST00000542033 OR7A5Q15622 319 aa2.34□□□□□ -2.03
USP28-210ENST00000542033 CLEC12BQ2HXU8 276 aa2.34□□□□□ -2.03
USP28-210ENST00000542033 HLA-DRB5Q30154 266 aa2.34□□□□□ -2.03
USP28-210ENST00000542033 LY6G6FQ5SQ64 297 aa2.34□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 136.9 ms