RNA–Protein interactions for RNA: ENST00000541488.1

PRKDC-210, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 3

Gene PRKDC, Length 719 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-210ENST00000541488 SLC2A9Q9NRM0 540 aa0.87□□□□□ -2.27
PRKDC-210ENST00000541488 NRBP2Q9NSY0 501 aa0.87□□□□□ -2.27
PRKDC-210ENST00000541488 IBTKQ9P2D0 1353 aaPredicted RBP0.86□□□□□ -2.27
PRKDC-210ENST00000541488 TRGV5A0A0B4J1U4 118 aa0.86□□□□□ -2.27
PRKDC-210ENST00000541488 A0A1B0GW54 56 aa0.86□□□□□ -2.27
PRKDC-210ENST00000541488 C5orf49A4QMS7 147 aa0.86□□□□□ -2.27
PRKDC-210ENST00000541488 ZNF860A6NHJ4 632 aa0.86□□□□□ -2.27
PRKDC-210ENST00000541488 YEATS4O95619 227 aa0.86□□□□□ -2.27
PRKDC-210ENST00000541488 NPYP01303 97 aa0.86□□□□□ -2.27
PRKDC-210ENST00000541488 IL6P05231 212 aa0.86□□□□□ -2.27
PRKDC-210ENST00000541488 GPX1P07203 203 aa0.86□□□□□ -2.27
PRKDC-210ENST00000541488 KRT7P08729 469 aa0.86□□□□□ -2.27
PRKDC-210ENST00000541488 ZNF728P0DKX0 622 aa0.86□□□□□ -2.27
PRKDC-210ENST00000541488 HLA-EP13747 358 aa0.86□□□□□ -2.27
PRKDC-210ENST00000541488 RPL27AP46776 148 aaKnown RBP0.86□□□□□ -2.27
PRKDC-210ENST00000541488 RBM11P57052 281 aaKnown RBP0.86□□□□□ -2.27
PRKDC-210ENST00000541488 TAS2R30P59541 319 aa0.86□□□□□ -2.27
PRKDC-210ENST00000541488 RPS24P62847 133 aaKnown RBP0.86□□□□□ -2.27
PRKDC-210ENST00000541488 HPCAP84074 193 aa0.86□□□□□ -2.27
PRKDC-210ENST00000541488 GNA12Q03113 381 aa0.86□□□□□ -2.27
PRKDC-210ENST00000541488 MED21Q13503 144 aa0.86□□□□□ -2.27
PRKDC-210ENST00000541488 HES1Q14469 280 aa0.86□□□□□ -2.27
PRKDC-210ENST00000541488 UAP1Q16222 522 aaPredicted RBP0.86□□□□□ -2.27
PRKDC-210ENST00000541488 PLPPR5Q32ZL2 321 aa0.86□□□□□ -2.27
PRKDC-210ENST00000541488 BAP18Q8IXM2 172 aa0.86□□□□□ -2.27
PRKDC-210ENST00000541488 LRRC34Q8IZ02 419 aa0.86□□□□□ -2.27
PRKDC-210ENST00000541488 FAM9CQ8IZT9 166 aa0.86□□□□□ -2.27
PRKDC-210ENST00000541488 Q8N402 240 aa0.86□□□□□ -2.27
PRKDC-210ENST00000541488 OR4X2Q8NGF9 303 aa0.86□□□□□ -2.27
PRKDC-210ENST00000541488 OR5J2Q8NH18 312 aa0.86□□□□□ -2.27
PRKDC-210ENST00000541488 CLDND2Q8NHS1 167 aa0.86□□□□□ -2.27
PRKDC-210ENST00000541488 SLC37A2Q8TED4 501 aa0.86□□□□□ -2.27
PRKDC-210ENST00000541488 SMCR5Q8TEV8 140 aa0.86□□□□□ -2.27
PRKDC-210ENST00000541488 SMIM19Q96E16 107 aa0.86□□□□□ -2.27
PRKDC-210ENST00000541488 ZNF514Q96K75 400 aaPredicted RBP0.86□□□□□ -2.27
PRKDC-210ENST00000541488 LYSTQ99698 3801 aa0.86□□□□□ -2.27
PRKDC-210ENST00000541488 C7orf50Q9BRJ6 194 aaKnown RBP0.86□□□□□ -2.27
PRKDC-210ENST00000541488 BBS2Q9BXC9 721 aa0.86□□□□□ -2.27
PRKDC-210ENST00000541488 CFAP45Q9UL16 551 aa0.86□□□□□ -2.27
PRKDC-210ENST00000541488 HDGFL3Q9Y3E1 203 aa0.86□□□□□ -2.27
PRKDC-210ENST00000541488 PCYT1BQ9Y5K3 369 aaPredicted RBP0.86□□□□□ -2.27
PRKDC-210ENST00000541488 TNRC6AQ8NDV7 1962 aaKnown RBP0.86□□□□□ -2.27
PRKDC-210ENST00000541488 SCN8AQ9UQD0 1980 aa0.86□□□□□ -2.27
PRKDC-210ENST00000541488 PI4KAP42356 2102 aa0.86□□□□□ -2.27
PRKDC-210ENST00000541488 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP0.86□□□□□ -2.273e-6■■■■■ 53.4
PRKDC-210ENST00000541488 DNAH1Q9P2D7 4330 aa0.85□□□□□ -2.27
PRKDC-210ENST00000541488 GOLGA4Q13439 2230 aaKnown RBP0.85□□□□□ -2.27
PRKDC-210ENST00000541488 HECTD4Q9Y4D8 3996 aa0.85□□□□□ -2.27
PRKDC-210ENST00000541488 KTN1Q86UP2 1357 aaKnown RBP0.85□□□□□ -2.27
PRKDC-210ENST00000541488 SYNE2Q8WXH0 6885 aaKnown RBP0.85□□□□□ -2.27
PRKDC-210ENST00000541488 TRAV41A0A0B4J266 112 aa0.85□□□□□ -2.27
PRKDC-210ENST00000541488 LINC00854A0A1B0GVQ3 168 aa0.85□□□□□ -2.27
PRKDC-210ENST00000541488 A0A1W2PQD3 144 aa0.85□□□□□ -2.27
PRKDC-210ENST00000541488 IGKV2-29A2NJV5 120 aaPredicted RBP0.85□□□□□ -2.27
PRKDC-210ENST00000541488 OR6C6A6NF89 314 aa0.85□□□□□ -2.27
PRKDC-210ENST00000541488 FABP12A6NFH5 140 aa0.85□□□□□ -2.27
PRKDC-210ENST00000541488 J3QQQ9 107 aa0.85□□□□□ -2.27
PRKDC-210ENST00000541488 M0R381 172 aa0.85□□□□□ -2.27
PRKDC-210ENST00000541488 AZIN1O14977 448 aa0.85□□□□□ -2.27
PRKDC-210ENST00000541488 ATP8B1O43520 1251 aa0.85□□□□□ -2.27
PRKDC-210ENST00000541488 ANK1P16157 1881 aa0.85□□□□□ -2.27
PRKDC-210ENST00000541488 SERPINB10P48595 397 aa0.85□□□□□ -2.27
PRKDC-210ENST00000541488 RPL14P50914 215 aaKnown RBP0.85□□□□□ -2.27
PRKDC-210ENST00000541488 TMEM33P57088 247 aa0.85□□□□□ -2.27
PRKDC-210ENST00000541488 RPL26P61254 145 aaKnown RBP0.85□□□□□ -2.27
PRKDC-210ENST00000541488 FKBP1AP62942 108 aaKnown RBP0.85□□□□□ -2.27
PRKDC-210ENST00000541488 HLA-DRB3P79483 266 aa0.85□□□□□ -2.27
PRKDC-210ENST00000541488 ERHP84090 104 aaKnown RBP0.85□□□□□ -2.27
PRKDC-210ENST00000541488 GNA13Q14344 377 aa0.85□□□□□ -2.27
PRKDC-210ENST00000541488 TPRXLQ17RH7 258 aa0.85□□□□□ -2.27
PRKDC-210ENST00000541488 PDPK2PQ6A1A2 396 aa0.85□□□□□ -2.27
PRKDC-210ENST00000541488 SLC35E3Q7Z769 313 aa0.85□□□□□ -2.27
PRKDC-210ENST00000541488 FUNDC1Q8IVP5 155 aa0.85□□□□□ -2.27
PRKDC-210ENST00000541488 C1orf174Q8IYL3 243 aa0.85□□□□□ -2.27
PRKDC-210ENST00000541488 CPAMD8Q8IZJ3 1885 aa0.85□□□□□ -2.27
PRKDC-210ENST00000541488 C10orf126Q8N4M7 172 aa0.85□□□□□ -2.27
PRKDC-210ENST00000541488 DEFB119Q8N690 84 aa0.85□□□□□ -2.27
PRKDC-210ENST00000541488 JOSD2Q8TAC2 188 aa0.85□□□□□ -2.27
PRKDC-210ENST00000541488 RPS4Y2Q8TD47 263 aa0.85□□□□□ -2.27
PRKDC-210ENST00000541488 FGF13Q92913 245 aa0.85□□□□□ -2.27
PRKDC-210ENST00000541488 NSRP1Q9H0G5 558 aaKnown RBP0.85□□□□□ -2.27
PRKDC-210ENST00000541488 HDHD2Q9H0R4 259 aa0.85□□□□□ -2.27
PRKDC-210ENST00000541488 MS4A6AQ9H2W1 248 aa0.85□□□□□ -2.27
PRKDC-210ENST00000541488 RPL26L1Q9UNX3 145 aaKnown RBP0.85□□□□□ -2.27
PRKDC-210ENST00000541488 HHLA3Q9XRX5 114 aa0.85□□□□□ -2.27
PRKDC-210ENST00000541488 PLXND1Q9Y4D7 1925 aa0.85□□□□□ -2.27
PRKDC-210ENST00000541488 ZNF532Q9HCE3 1301 aa0.85□□□□□ -2.27
PRKDC-210ENST00000541488 PKDREJQ9NTG1 2253 aa0.85□□□□□ -2.27
PRKDC-210ENST00000541488 MYH11P35749 1972 aa0.85□□□□□ -2.27
PRKDC-210ENST00000541488 A0A087WUU8 490 aa0.84□□□□□ -2.27
PRKDC-210ENST00000541488 TINCRA0A1B0GVN0 87 aa0.84□□□□□ -2.27
PRKDC-210ENST00000541488 BHLHE40O14503 412 aa0.84□□□□□ -2.27
PRKDC-210ENST00000541488 ITGB1BP1O14713 200 aa0.84□□□□□ -2.27
PRKDC-210ENST00000541488 BIRC5O15392 142 aa0.84□□□□□ -2.27
PRKDC-210ENST00000541488 SSNA1O43805 119 aa0.84□□□□□ -2.27
PRKDC-210ENST00000541488 KRT75O95678 551 aa0.84□□□□□ -2.27
PRKDC-210ENST00000541488 CXCL2P19875 107 aa0.84□□□□□ -2.27
PRKDC-210ENST00000541488 IFNGR2P38484 337 aa0.84□□□□□ -2.27
PRKDC-210ENST00000541488 GABRA2P47869 451 aa0.84□□□□□ -2.27
PRKDC-210ENST00000541488 IDH3GP51553 393 aaPredicted RBP0.84□□□□□ -2.27
Retrieved 100 of 20,778 RNA–protein pairs in 106.1 ms