RNA–Protein interactions for RNA: ENST00000538570.5

COL4A6-208, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,528 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-208ENST00000538570 KIR3DL3Q8N743 410 aa8.36□□□□□ -1.07
COL4A6-208ENST00000538570 NEUROG3Q9Y4Z2 214 aa8.36□□□□□ -1.07
COL4A6-208ENST00000538570 CTSBP07858 339 aa8.35□□□□□ -1.07
COL4A6-208ENST00000538570 MALP21145 153 aa8.35□□□□□ -1.07
COL4A6-208ENST00000538570 EVI2AP22794 236 aa8.35□□□□□ -1.07
COL4A6-208ENST00000538570 MLNRO43193 412 aa8.35□□□□□ -1.07
COL4A6-208ENST00000538570 ZNF525Q8N782 197 aa8.35□□□□□ -1.07
COL4A6-208ENST00000538570 MYO16Q9Y6X6 1858 aa8.35□□□□□ -1.07
COL4A6-208ENST00000538570 EFEMP2O95967 443 aa8.35□□□□□ -1.07
COL4A6-208ENST00000538570 CD5P06127 495 aa8.35□□□□□ -1.07
COL4A6-208ENST00000538570 OR13A1Q8NGR1 328 aa8.35□□□□□ -1.07
COL4A6-208ENST00000538570 TRGV2A0A075B6R0 118 aa8.35□□□□□ -1.07
COL4A6-208ENST00000538570 IFI27P40305 119 aaPredicted RBP8.35□□□□□ -1.07
COL4A6-208ENST00000538570 NEU4Q8WWR8 484 aaPredicted RBP8.35□□□□□ -1.07
COL4A6-208ENST00000538570 SLC25A28Q96A46 364 aa8.35□□□□□ -1.07
COL4A6-208ENST00000538570 MRPL20Q9BYC9 149 aaKnown RBP8.35□□□□□ -1.07
COL4A6-208ENST00000538570 SAA1P0DJI8 122 aaPredicted RBP8.34□□□□□ -1.07
COL4A6-208ENST00000538570 ASCL2Q99929 193 aa8.34□□□□□ -1.07
COL4A6-208ENST00000538570 ZNF703Q9H7S9 590 aaPredicted RBP8.34□□□□□ -1.07
COL4A6-208ENST00000538570 FGF16O43320 207 aa8.34□□□□□ -1.07
COL4A6-208ENST00000538570 MPV17L2Q567V2 206 aa8.34□□□□□ -1.07
COL4A6-208ENST00000538570 SHISA3A0PJX4 238 aa8.34□□□□□ -1.07
COL4A6-208ENST00000538570 CECR9P0C854 216 aa8.34□□□□□ -1.07
COL4A6-208ENST00000538570 TMEM42Q69YG0 159 aa8.34□□□□□ -1.07
COL4A6-208ENST00000538570 PEMTQ9UBM1 199 aa8.34□□□□□ -1.07
COL4A6-208ENST00000538570 FABP5P3A8MUU1 101 aa8.34□□□□□ -1.07
COL4A6-208ENST00000538570 SMAD7O15105 426 aaKnown RBP8.34□□□□□ -1.07
COL4A6-208ENST00000538570 FAM90A1Q86YD7 464 aa8.34□□□□□ -1.07
COL4A6-208ENST00000538570 KLHDC3Q9BQ90 382 aa8.34□□□□□ -1.07
COL4A6-208ENST00000538570 SPANXCQ9NY87 97 aa8.34□□□□□ -1.07
COL4A6-208ENST00000538570 IGKV3D-20A0A0C4DH25 116 aa8.34□□□□□ -1.08
COL4A6-208ENST00000538570 DPM2O94777 84 aa8.34□□□□□ -1.08
COL4A6-208ENST00000538570 BTCP35070 178 aa8.34□□□□□ -1.08
COL4A6-208ENST00000538570 RNF182Q8N6D2 247 aa8.34□□□□□ -1.08
COL4A6-208ENST00000538570 C1orf162Q8NEQ5 155 aaPredicted RBP8.34□□□□□ -1.08
COL4A6-208ENST00000538570 SLC25A15Q9Y619 301 aa8.34□□□□□ -1.08
COL4A6-208ENST00000538570 C1QTNF9P0C862 333 aa8.33□□□□□ -1.08
COL4A6-208ENST00000538570 SRSF1Q07955 248 aaKnown RBP eCLIP8.33□□□□□ -1.08
COL4A6-208ENST00000538570 ATXN8Q156A1 80 aa8.33□□□□□ -1.08
COL4A6-208ENST00000538570 CD300EQ496F6 205 aaPredicted RBP8.33□□□□□ -1.08
COL4A6-208ENST00000538570 FAM216BQ8N7L0 139 aa8.33□□□□□ -1.08
COL4A6-208ENST00000538570 C18orf12Q96KH6 178 aa8.33□□□□□ -1.08
COL4A6-208ENST00000538570 RNASE7Q9H1E1 156 aaKnown RBP8.33□□□□□ -1.08
COL4A6-208ENST00000538570 CEP290O15078 2479 aa8.33□□□□□ -1.08
COL4A6-208ENST00000538570 CCL20P78556 96 aa8.33□□□□□ -1.08
COL4A6-208ENST00000538570 KIR3DS1Q14943 382 aa8.33□□□□□ -1.08
COL4A6-208ENST00000538570 PSG3Q16557 428 aa8.33□□□□□ -1.08
COL4A6-208ENST00000538570 COQ2Q96H96 371 aa8.33□□□□□ -1.08
COL4A6-208ENST00000538570 C1QTNF5Q9BXJ0 243 aa8.33□□□□□ -1.08
COL4A6-208ENST00000538570 ATG2BQ96BY7 2078 aa8.33□□□□□ -1.08
COL4A6-208ENST00000538570 GATA2P23769 480 aaPredicted RBP8.33□□□□□ -1.08
COL4A6-208ENST00000538570 RSPO4Q2I0M5 234 aaPredicted RBP8.33□□□□□ -1.08
COL4A6-208ENST00000538570 DLX4Q92988 240 aaPredicted RBP8.33□□□□□ -1.08
COL4A6-208ENST00000538570 ABHD17AQ96GS6 310 aa8.33□□□□□ -1.08
COL4A6-208ENST00000538570 LINC00312Q9Y6C7 94 aa8.33□□□□□ -1.08
COL4A6-208ENST00000538570 COL11A2P13942 1736 aaPredicted RBP8.33□□□□□ -1.08
COL4A6-208ENST00000538570 A0A087X0K7 114 aa8.33□□□□□ -1.08
COL4A6-208ENST00000538570 F8VVB4 439 aa8.33□□□□□ -1.08
COL4A6-208ENST00000538570 F8VWA3 439 aa8.33□□□□□ -1.08
COL4A6-208ENST00000538570 HBDP02042 147 aa8.33□□□□□ -1.08
COL4A6-208ENST00000538570 NRN1LQ496H8 165 aa8.33□□□□□ -1.08
COL4A6-208ENST00000538570 PHLDA1Q8WV24 401 aaPredicted RBP8.33□□□□□ -1.08
COL4A6-208ENST00000538570 SLX1AQ9BQ83 275 aa8.33□□□□□ -1.08
COL4A6-208ENST00000538570 SLC50A1Q9BRV3 221 aa8.33□□□□□ -1.08
COL4A6-208ENST00000538570 REG4Q9BYZ8 158 aa8.33□□□□□ -1.08
COL4A6-208ENST00000538570 V9GYY9 64 aa8.33□□□□□ -1.08
COL4A6-208ENST00000538570 CD7P09564 240 aa8.33□□□□□ -1.08
COL4A6-208ENST00000538570 HTN3P15516 51 aa8.33□□□□□ -1.08
COL4A6-208ENST00000538570 HERV-K104P63124 156 aa8.33□□□□□ -1.08
COL4A6-208ENST00000538570 GNG5P63218 68 aa8.33□□□□□ -1.08
COL4A6-208ENST00000538570 C19orf48Q6RUI8 117 aa8.33□□□□□ -1.08
COL4A6-208ENST00000538570 PPP1R32Q7Z5V6 425 aa8.33□□□□□ -1.08
COL4A6-208ENST00000538570 LHX2P50458 406 aa8.32□□□□□ -1.08
COL4A6-208ENST00000538570 FAM201AQ5SY85 155 aa8.32□□□□□ -1.08
COL4A6-208ENST00000538570 VKORC1Q9BQB6 163 aa8.32□□□□□ -1.08
COL4A6-208ENST00000538570 RNF126Q9BV68 326 aa8.32□□□□□ -1.08
COL4A6-208ENST00000538570 MS4A6AQ9H2W1 248 aa8.32□□□□□ -1.08
COL4A6-208ENST00000538570 CHCHD2Q9Y6H1 151 aaPredicted RBP8.32□□□□□ -1.08
COL4A6-208ENST00000538570 TRBV20-1A0A075B6N2 111 aa8.32□□□□□ -1.08
COL4A6-208ENST00000538570 A0A0G2JK05 382 aa8.32□□□□□ -1.08
COL4A6-208ENST00000538570 CD5LO43866 347 aa8.32□□□□□ -1.08
COL4A6-208ENST00000538570 RFPL3SP0C7P2 107 aa8.32□□□□□ -1.08
COL4A6-208ENST00000538570 SP9P0CG40 484 aa8.32□□□□□ -1.08
COL4A6-208ENST00000538570 C5orf47Q569G3 176 aa8.32□□□□□ -1.08
COL4A6-208ENST00000538570 FDCSPQ8NFU4 85 aa8.32□□□□□ -1.08
COL4A6-208ENST00000538570 FAM57AQ8TBR7 257 aa8.32□□□□□ -1.08
COL4A6-208ENST00000538570 COLQQ9Y215 455 aaPredicted RBP8.32□□□□□ -1.08
COL4A6-208ENST00000538570 IGHV3OR16-8A0A075B7F1 116 aa8.32□□□□□ -1.08
COL4A6-208ENST00000538570 IGHV2OR16-5A0A0B4J2B6 119 aa8.32□□□□□ -1.08
COL4A6-208ENST00000538570 TMEM258P61165 79 aa8.32□□□□□ -1.08
COL4A6-208ENST00000538570 FAM27E3Q08E93 113 aa8.32□□□□□ -1.08
COL4A6-208ENST00000538570 PVRIGQ6DKI7 326 aa8.32□□□□□ -1.08
COL4A6-208ENST00000538570 ZIC4Q8N9L1 334 aa8.32□□□□□ -1.08
COL4A6-208ENST00000538570 UPK2O00526 184 aa8.32□□□□□ -1.08
COL4A6-208ENST00000538570 SIGLEC12Q96PQ1 595 aa8.32□□□□□ -1.08
COL4A6-208ENST00000538570 CHTOPQ9Y3Y2 248 aaKnown RBP8.32□□□□□ -1.08
COL4A6-208ENST00000538570 CABIN1Q9Y6J0 2220 aa8.32□□□□□ -1.08
COL4A6-208ENST00000538570 ERVK11-1P61568 191 aa8.31□□□□□ -1.08
COL4A6-208ENST00000538570 BSPH1Q075Z2 132 aa8.31□□□□□ -1.08
COL4A6-208ENST00000538570 STHQ8IWL8 128 aa8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 78.3 ms