RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 PJVKQ0ZLH3 352 aa6.59□□□□□ -1.35
USP28-205ENST00000537706 TMEM128Q5BJH2 165 aa6.59□□□□□ -1.35
USP28-205ENST00000537706 SRSF12Q8WXF0 261 aaKnown RBP6.59□□□□□ -1.35
USP28-205ENST00000537706 CYYR1Q96J86 154 aa6.59□□□□□ -1.35
USP28-205ENST00000537706 SLC35D1Q9NTN3 355 aa6.59□□□□□ -1.35
USP28-205ENST00000537706 DNAH5Q8TE73 4624 aa6.58□□□□□ -1.36
USP28-205ENST00000537706 ELOA3CA0A087WX78 387 aaPredicted RBP6.58□□□□□ -1.36
USP28-205ENST00000537706 A0A0B4J2A0 478 aa6.58□□□□□ -1.36
USP28-205ENST00000537706 L7N2F9 121 aa6.58□□□□□ -1.36
USP28-205ENST00000537706 IFNA7P01567 189 aa6.58□□□□□ -1.36
USP28-205ENST00000537706 IGKV1-16P04430 117 aa6.58□□□□□ -1.36
USP28-205ENST00000537706 FCGR3AP08637 254 aa6.58□□□□□ -1.36
USP28-205ENST00000537706 RPA2P15927 270 aa6.58□□□□□ -1.36
USP28-205ENST00000537706 NFYAP23511 347 aaPredicted RBP6.58□□□□□ -1.36
USP28-205ENST00000537706 SSBP2P81877 361 aaPredicted RBP6.58□□□□□ -1.36
USP28-205ENST00000537706 FGL1Q08830 312 aa6.58□□□□□ -1.36
USP28-205ENST00000537706 VMA21Q3ZAQ7 101 aa6.58□□□□□ -1.36
USP28-205ENST00000537706 AADACL3Q5VUY0 350 aa6.58□□□□□ -1.36
USP28-205ENST00000537706 C5orf24Q7Z6I8 188 aa6.58□□□□□ -1.36
USP28-205ENST00000537706 TTC9CQ8N5M4 171 aa6.58□□□□□ -1.36
USP28-205ENST00000537706 HARBI1Q96MB7 349 aa6.58□□□□□ -1.36
USP28-205ENST00000537706 CMSS1Q9BQ75 279 aaKnown RBP6.58□□□□□ -1.36
USP28-205ENST00000537706 ZNF581Q9P0T4 197 aa6.58□□□□□ -1.36
USP28-205ENST00000537706 SHPKQ9UHJ6 478 aa6.58□□□□□ -1.36
USP28-205ENST00000537706 AK3Q9UIJ7 227 aa6.58□□□□□ -1.36
USP28-205ENST00000537706 ANXA10Q9UJ72 324 aa6.58□□□□□ -1.36
USP28-205ENST00000537706 GPR132Q9UNW8 380 aa6.58□□□□□ -1.36
USP28-205ENST00000537706 ZNF257Q9Y2Q1 563 aa6.58□□□□□ -1.36
USP28-205ENST00000537706 FXYD6-FXYD2A0A087WZ82 144 aa6.58□□□□□ -1.36
USP28-205ENST00000537706 A0A1B0GW64 132 aa6.58□□□□□ -1.36
USP28-205ENST00000537706 DBX1A6NMT0 343 aa6.58□□□□□ -1.36
USP28-205ENST00000537706 EREGO14944 169 aa6.58□□□□□ -1.36
USP28-205ENST00000537706 MPC2O95563 127 aa6.58□□□□□ -1.36
USP28-205ENST00000537706 IGHV3-23P01764 117 aa6.58□□□□□ -1.36
USP28-205ENST00000537706 CTSDP07339 412 aaPredicted RBP6.58□□□□□ -1.36
USP28-205ENST00000537706 CXCL2P19875 107 aa6.58□□□□□ -1.36
USP28-205ENST00000537706 BTF3P20290 206 aaKnown RBP6.58□□□□□ -1.36
USP28-205ENST00000537706 VAMP1P23763 118 aa6.58□□□□□ -1.36
USP28-205ENST00000537706 PSMB6P28072 239 aa6.58□□□□□ -1.36
USP28-205ENST00000537706 ARPC4P59998 168 aa6.58□□□□□ -1.36
USP28-205ENST00000537706 KRTAP10-2P60368 255 aa6.58□□□□□ -1.36
USP28-205ENST00000537706 OPCMLQ14982 345 aa6.58□□□□□ -1.36
USP28-205ENST00000537706 MORN3Q6PF18 240 aaPredicted RBP6.58□□□□□ -1.36
USP28-205ENST00000537706 ZNF680Q8NEM1 530 aa6.58□□□□□ -1.36
USP28-205ENST00000537706 EDARADDQ8WWZ3 215 aa6.58□□□□□ -1.36
USP28-205ENST00000537706 MAFIPQ8WZ33 124 aa6.58□□□□□ -1.36
USP28-205ENST00000537706 TMEM230Q96A57 120 aa6.58□□□□□ -1.36
USP28-205ENST00000537706 HDHD3Q9BSH5 251 aaPredicted RBP6.58□□□□□ -1.36
USP28-205ENST00000537706 FXYD6Q9H0Q3 95 aa6.58□□□□□ -1.36
USP28-205ENST00000537706 C12orf4Q9NQ89 552 aa6.58□□□□□ -1.36
USP28-205ENST00000537706 IGKV1D-8A0A087WSZ0 117 aa6.57□□□□□ -1.36
USP28-205ENST00000537706 TRAV14DV4A0A0A6YYC5 116 aa6.57□□□□□ -1.36
USP28-205ENST00000537706 TRBV7-1A0A0A6YYK4 115 aa6.57□□□□□ -1.36
USP28-205ENST00000537706 ITGB1BP1O14713 200 aa6.57□□□□□ -1.36
USP28-205ENST00000537706 ARPC5O15511 151 aa6.57□□□□□ -1.36
USP28-205ENST00000537706 SFT2D2O95562 160 aa6.57□□□□□ -1.36
USP28-205ENST00000537706 CRYGBP07316 175 aa6.57□□□□□ -1.36
USP28-205ENST00000537706 AKR1C4P17516 323 aa6.57□□□□□ -1.36
USP28-205ENST00000537706 FUT3P21217 361 aa6.57□□□□□ -1.36
USP28-205ENST00000537706 PAFAH1B2P68402 229 aa6.57□□□□□ -1.36
USP28-205ENST00000537706 STHQ8IWL8 128 aa6.57□□□□□ -1.36
USP28-205ENST00000537706 GAPTQ8N292 157 aa6.57□□□□□ -1.36
USP28-205ENST00000537706 IL1F10Q8WWZ1 152 aa6.57□□□□□ -1.36
USP28-205ENST00000537706 FAAP24Q9BTP7 215 aa6.57□□□□□ -1.36
USP28-205ENST00000537706 PGPEP1Q9NXJ5 209 aa6.57□□□□□ -1.36
USP28-205ENST00000537706 ZNF705EA8MWA4 302 aaPredicted RBP6.56□□□□□ -1.36
USP28-205ENST00000537706 IFNA5P01569 189 aa6.56□□□□□ -1.36
USP28-205ENST00000537706 GLAP06280 429 aa6.56□□□□□ -1.36
USP28-205ENST00000537706 SLC25A4P12235 298 aa6.56□□□□□ -1.36
USP28-205ENST00000537706 HIST1H1BP16401 226 aaKnown RBP6.56□□□□□ -1.36
USP28-205ENST00000537706 S100A11P31949 105 aa6.56□□□□□ -1.36
USP28-205ENST00000537706 ZNF345Q14585 488 aa6.56□□□□□ -1.36
USP28-205ENST00000537706 UNQ9165/PRO28630Q6UXU0 137 aa6.56□□□□□ -1.36
USP28-205ENST00000537706 TEX45Q8NA69 505 aa6.56□□□□□ -1.36
USP28-205ENST00000537706 ABHD14BQ96IU4 210 aa6.56□□□□□ -1.36
USP28-205ENST00000537706 CXorf58Q96LI9 332 aa6.56□□□□□ -1.36
USP28-205ENST00000537706 RTBDNQ9BSG5 229 aaPredicted RBP6.56□□□□□ -1.36
USP28-205ENST00000537706 PDCD10Q9BUL8 212 aa6.56□□□□□ -1.36
USP28-205ENST00000537706 DAZ1Q9NQZ3 744 aaKnown RBP6.56□□□□□ -1.36
USP28-205ENST00000537706 TMEM14BQ9NUH8 114 aa6.56□□□□□ -1.36
USP28-205ENST00000537706 COMMD9Q9P000 198 aa6.56□□□□□ -1.36
USP28-205ENST00000537706 CELA1Q9UNI1 258 aa6.56□□□□□ -1.36
USP28-205ENST00000537706 C14orf166Q9Y224 244 aaKnown RBP6.56□□□□□ -1.36
USP28-205ENST00000537706 TEX48A0A1B0GUV7 120 aa6.56□□□□□ -1.36
USP28-205ENST00000537706 CCSO14618 274 aa6.56□□□□□ -1.36
USP28-205ENST00000537706 SPART-AS1P0CW21 52 aa6.56□□□□□ -1.36
USP28-205ENST00000537706 PGAM2P15259 253 aa6.56□□□□□ -1.36
USP28-205ENST00000537706 XGP55808 180 aa6.56□□□□□ -1.36
USP28-205ENST00000537706 SUPT4H1P63272 117 aaKnown RBP6.56□□□□□ -1.36
USP28-205ENST00000537706 TAGLNQ01995 201 aaKnown RBP6.56□□□□□ -1.36
USP28-205ENST00000537706 ZNF124Q15973 351 aa6.56□□□□□ -1.36
USP28-205ENST00000537706 Q6ZS49 121 aa6.56□□□□□ -1.36
USP28-205ENST00000537706 TMUB2Q71RG4 321 aa6.56□□□□□ -1.36
USP28-205ENST00000537706 ZNF383Q8NA42 475 aa6.56□□□□□ -1.36
USP28-205ENST00000537706 COQ8AQ8NI60 647 aa6.56□□□□□ -1.36
USP28-205ENST00000537706 ZNF2Q9BSG1 426 aaPredicted RBP6.56□□□□□ -1.36
USP28-205ENST00000537706 NMES1Q9C002 83 aa6.56□□□□□ -1.36
USP28-205ENST00000537706 IGLV2-23P01705 113 aa6.55□□□□□ -1.36
USP28-205ENST00000537706 CLEC3BP05452 202 aa6.55□□□□□ -1.36
USP28-205ENST00000537706 RRASP10301 218 aa6.55□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms