RNA–Protein interactions for RNA: ENST00000486991.1

NR1H3-223, Transcript of nuclear receptor subfamily 1 group H member 3, human

TSL 4

Gene NR1H3, Length 539 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NR1H3-223	ENST00000486991	P2RY1	P47900	373 aa		10.11	□□□□□ -0.79
NR1H3-223	ENST00000486991	RAB9A	P51151	201 aa		10.11	□□□□□ -0.79
NR1H3-223	ENST00000486991	ATP5I	P56385	69 aa	Predicted RBP	10.11	□□□□□ -0.79
NR1H3-223	ENST00000486991	RHOG	P84095	191 aa		10.11	□□□□□ -0.79
NR1H3-223	ENST00000486991	OR8G2P	Q6IF36	304 aa		10.11	□□□□□ -0.79
NR1H3-223	ENST00000486991	MYOZ3	Q8TDC0	251 aa		10.11	□□□□□ -0.79
NR1H3-223	ENST00000486991	PINX1	Q96BK5	328 aa	Known RBP	10.11	□□□□□ -0.79
NR1H3-223	ENST00000486991	SLA2	Q9H6Q3	261 aa		10.11	□□□□□ -0.79
NR1H3-223	ENST00000486991	LYRM2	Q9NU23	88 aa	Predicted RBP	10.11	□□□□□ -0.79
NR1H3-223	ENST00000486991	THYN1	Q9P016	225 aa		10.11	□□□□□ -0.79
NR1H3-223	ENST00000486991	TRBV9	A0A0B4J1U6	114 aa		10.1	□□□□□ -0.79
NR1H3-223	ENST00000486991	RPLP1	P05386	114 aa	Known RBP	10.1	□□□□□ -0.79
NR1H3-223	ENST00000486991	SLC25A4	P12235	298 aa		10.1	□□□□□ -0.79
NR1H3-223	ENST00000486991	LYL1	P12980	280 aa		10.1	□□□□□ -0.79
NR1H3-223	ENST00000486991	CDX1	P47902	265 aa	Predicted RBP	10.1	□□□□□ -0.79
NR1H3-223	ENST00000486991	TMEM14EP	Q6UXP3	125 aa		10.1	□□□□□ -0.79
NR1H3-223	ENST00000486991	TCTE3	Q8IZS6	198 aa		10.1	□□□□□ -0.79
NR1H3-223	ENST00000486991	LINC00482	Q8N8I6	264 aa		10.1	□□□□□ -0.79
NR1H3-223	ENST00000486991	NECAP1	Q8NC96	275 aa		10.1	□□□□□ -0.79
NR1H3-223	ENST00000486991	IGSF23	A1L1A6	192 aa		10.09	□□□□□ -0.79
NR1H3-223	ENST00000486991	FAM223B	A6NKX1	122 aa		10.09	□□□□□ -0.79
NR1H3-223	ENST00000486991		G3V3Q6	166 aa		10.09	□□□□□ -0.79
NR1H3-223	ENST00000486991	CORT	O00230	105 aa		10.09	□□□□□ -0.79
NR1H3-223	ENST00000486991	CST7	O76096	145 aa		10.09	□□□□□ -0.79
NR1H3-223	ENST00000486991	BRI3	O95415	125 aa		10.09	□□□□□ -0.79
NR1H3-223	ENST00000486991	MT-CO2	P00403	227 aa		10.09	□□□□□ -0.79
NR1H3-223	ENST00000486991	IGHV3-48	P01763	117 aa		10.09	□□□□□ -0.79
NR1H3-223	ENST00000486991	NUP62	P37198	522 aa	Predicted RBP	10.09	□□□□□ -0.79
NR1H3-223	ENST00000486991	OPRK1	P41145	380 aa		10.09	□□□□□ -0.79
NR1H3-223	ENST00000486991	ATP5G2	Q06055	141 aa		10.09	□□□□□ -0.79
NR1H3-223	ENST00000486991	CD300C	Q08708	224 aa		10.09	□□□□□ -0.79
NR1H3-223	ENST00000486991	PVRIG	Q6DKI7	326 aa		10.09	□□□□□ -0.79
NR1H3-223	ENST00000486991	C8orf86	Q6ZUL3	223 aa		10.09	□□□□□ -0.79
NR1H3-223	ENST00000486991	STX12	Q86Y82	276 aa		10.09	□□□□□ -0.79
NR1H3-223	ENST00000486991	FAM223A	Q8IWN6	122 aa		10.09	□□□□□ -0.79
NR1H3-223	ENST00000486991	TMEM252	Q8N6L7	170 aa		10.09	□□□□□ -0.79
NR1H3-223	ENST00000486991	RNASEH2C	Q8TDP1	164 aa	Known RBP	10.09	□□□□□ -0.79
NR1H3-223	ENST00000486991	NEURL2	Q9BR09	285 aa		10.09	□□□□□ -0.79
NR1H3-223	ENST00000486991	SLC25A31	Q9H0C2	315 aa		10.09	□□□□□ -0.79
NR1H3-223	ENST00000486991	ZC4H2	Q9NQZ6	224 aa		10.09	□□□□□ -0.79
NR1H3-223	ENST00000486991		S4R3C0	116 aa		10.09	□□□□□ -0.79
NR1H3-223	ENST00000486991	SORL1	Q92673	2214 aa		10.09	□□□□□ -0.79
NR1H3-223	ENST00000486991		A0A0G2JLM5	398 aa		10.08	□□□□□ -0.8
NR1H3-223	ENST00000486991	RPS10-NUDT3	A0A1W2PQS6	291 aa		10.08	□□□□□ -0.8
NR1H3-223	ENST00000486991	MFSD2B	A6NFX1	497 aa		10.08	□□□□□ -0.8
NR1H3-223	ENST00000486991		K7EIM0	57 aa		10.08	□□□□□ -0.8
NR1H3-223	ENST00000486991	CCL24	O00175	119 aa		10.08	□□□□□ -0.8
NR1H3-223	ENST00000486991	PFDN1	O60925	122 aa		10.08	□□□□□ -0.8
NR1H3-223	ENST00000486991	IGHV3-11	P01762	117 aa		10.08	□□□□□ -0.8
NR1H3-223	ENST00000486991	IGHV3-23	P01764	117 aa		10.08	□□□□□ -0.8
NR1H3-223	ENST00000486991	RPL12	P30050	165 aa	Known RBP	10.08	□□□□□ -0.8
NR1H3-223	ENST00000486991	SULT1A1	P50225	295 aa		10.08	□□□□□ -0.8
NR1H3-223	ENST00000486991	EWSR1	Q01844	656 aa	Known RBP eCLIP	10.08	□□□□□ -0.8
NR1H3-223	ENST00000486991	CD69	Q07108	199 aa		10.08	□□□□□ -0.8
NR1H3-223	ENST00000486991	EXOSC2	Q13868	293 aa	Known RBP	10.08	□□□□□ -0.8
NR1H3-223	ENST00000486991	KIAA0141	Q14154	515 aa	Predicted RBP	10.08	□□□□□ -0.8
NR1H3-223	ENST00000486991	MLANA	Q16655	118 aa		10.08	□□□□□ -0.8
NR1H3-223	ENST00000486991	KLK9	Q2XQG4	91 aa		10.08	□□□□□ -0.8
NR1H3-223	ENST00000486991	C15orf32	Q32M92	178 aa		10.08	□□□□□ -0.8
NR1H3-223	ENST00000486991	ZNF546	Q86UE3	836 aa		10.08	□□□□□ -0.8
NR1H3-223	ENST00000486991	ZNF491	Q8N8L2	437 aa		10.08	□□□□□ -0.8
NR1H3-223	ENST00000486991	USMG5	Q96IX5	58 aa		10.08	□□□□□ -0.8
NR1H3-223	ENST00000486991	KLK9	Q9UKQ9	250 aa		10.08	□□□□□ -0.8
NR1H3-223	ENST00000486991		I3L2K1	104 aa		10.07	□□□□□ -0.8
NR1H3-223	ENST00000486991	NHLH2	Q02577	135 aa		10.07	□□□□□ -0.8
NR1H3-223	ENST00000486991	SLC38A11	Q08AI6	406 aa		10.07	□□□□□ -0.8
NR1H3-223	ENST00000486991	EGFEM1P	Q0D2K5	195 aa		10.07	□□□□□ -0.8
NR1H3-223	ENST00000486991	ARL16	Q0P5N6	197 aa		10.07	□□□□□ -0.8
NR1H3-223	ENST00000486991	ACSM6	Q6P461	480 aa		10.07	□□□□□ -0.8
NR1H3-223	ENST00000486991	HAPLN4	Q86UW8	402 aa		10.07	□□□□□ -0.8
NR1H3-223	ENST00000486991	TMEM217	Q8N7C4	229 aa		10.07	□□□□□ -0.8
NR1H3-223	ENST00000486991	INO80E	Q8NBZ0	244 aa	Predicted RBP	10.07	□□□□□ -0.8
NR1H3-223	ENST00000486991	OR10P1	Q8NGE3	313 aa		10.07	□□□□□ -0.8
NR1H3-223	ENST00000486991	SCARB1	Q8WTV0	552 aa		10.07	□□□□□ -0.8
NR1H3-223	ENST00000486991	C4orf3	Q8WVX3	66 aa		10.07	□□□□□ -0.8
NR1H3-223	ENST00000486991	EEF1AKMT3	Q96AZ1	226 aa		10.07	□□□□□ -0.8
NR1H3-223	ENST00000486991	RAX2	Q96IS3	184 aa		10.07	□□□□□ -0.8
NR1H3-223	ENST00000486991	CXorf58	Q96LI9	332 aa		10.07	□□□□□ -0.8
NR1H3-223	ENST00000486991	DUX3	Q96PT4	197 aa		10.07	□□□□□ -0.8
NR1H3-223	ENST00000486991	OR5B12	Q96R08	314 aa		10.07	□□□□□ -0.8
NR1H3-223	ENST00000486991	FNDC4	Q9H6D8	234 aa	Predicted RBP	10.07	□□□□□ -0.8
NR1H3-223	ENST00000486991	SMCO3	A2RU48	225 aa		10.06	□□□□□ -0.8
NR1H3-223	ENST00000486991	PMS2P5	A8MQ11	134 aa		10.06	□□□□□ -0.8
NR1H3-223	ENST00000486991	ARPC5	O15511	151 aa		10.06	□□□□□ -0.8
NR1H3-223	ENST00000486991	SCAF4	O95104	1147 aa	Known RBP	10.06	□□□□□ -0.8
NR1H3-223	ENST00000486991	AP2S1	P53680	142 aa	Predicted RBP	10.06	□□□□□ -0.8
NR1H3-223	ENST00000486991	HBG1	P69891	147 aa		10.06	□□□□□ -0.8
NR1H3-223	ENST00000486991	HBG2	P69892	147 aa		10.06	□□□□□ -0.8
NR1H3-223	ENST00000486991	DEFB136	Q30KP8	78 aa		10.06	□□□□□ -0.8
NR1H3-223	ENST00000486991	ETFRF1	Q6IPR1	90 aa		10.06	□□□□□ -0.8
NR1H3-223	ENST00000486991	ACOT7L	Q6ZUV0	252 aa		10.06	□□□□□ -0.8
NR1H3-223	ENST00000486991	SLC16A13	Q7RTY0	426 aa		10.06	□□□□□ -0.8
NR1H3-223	ENST00000486991	LILRB2	Q8N423	598 aa		10.06	□□□□□ -0.8
NR1H3-223	ENST00000486991	UBAC2	Q8NBM4	344 aa		10.06	□□□□□ -0.8
NR1H3-223	ENST00000486991	OR11H4	Q8NGC9	324 aa		10.06	□□□□□ -0.8
NR1H3-223	ENST00000486991	VN1R17P	Q8TDU5	208 aa		10.06	□□□□□ -0.8
NR1H3-223	ENST00000486991	BSCL2	Q96G97	398 aa	Predicted RBP	10.06	□□□□□ -0.8
NR1H3-223	ENST00000486991	ACY3	Q96HD9	319 aa		10.06	□□□□□ -0.8
NR1H3-223	ENST00000486991	SLC35E1	Q96K37	410 aa		10.06	□□□□□ -0.8
NR1H3-223	ENST00000486991	UBE2E2	Q96LR5	201 aa		10.06	□□□□□ -0.8

Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms