RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 ZNF71Q9NQZ8 489 aaPredicted RBP7.1□□□□□ -1.27
USP40-203ENST00000427112 GAGE10A6NGK3 116 aa7.09□□□□□ -1.27
USP40-203ENST00000427112 ZNF207O43670 478 aaKnown RBP7.09□□□□□ -1.27
USP40-203ENST00000427112 UBE2L3P68036 154 aaKnown RBP7.09□□□□□ -1.27
USP40-203ENST00000427112 TCF24Q7RTU0 167 aa7.09□□□□□ -1.27
USP40-203ENST00000427112 CISD2Q8N5K1 135 aaKnown RBP7.09□□□□□ -1.27
USP40-203ENST00000427112 TMEM178AQ8NBL3 297 aa7.09□□□□□ -1.27
USP40-203ENST00000427112 SLC35E1Q96K37 410 aa7.09□□□□□ -1.27
USP40-203ENST00000427112 GTSF1LQ9H1H1 148 aa7.09□□□□□ -1.27
USP40-203ENST00000427112 TPSG1Q9NRR2 321 aa7.09□□□□□ -1.27
USP40-203ENST00000427112 DSCAML1Q8TD84 2053 aa7.09□□□□□ -1.27
USP40-203ENST00000427112 TMSB15BA0A087X1C1 80 aa7.09□□□□□ -1.27
USP40-203ENST00000427112 TRAV8-1A0A0A6YYK1 113 aa7.09□□□□□ -1.27
USP40-203ENST00000427112 A8MXE2 369 aa7.09□□□□□ -1.27
USP40-203ENST00000427112 LINC00310P59036 64 aa7.09□□□□□ -1.27
USP40-203ENST00000427112 RPL15P61313 204 aaKnown RBP7.09□□□□□ -1.27
USP40-203ENST00000427112 FAM90A1Q86YD7 464 aa7.09□□□□□ -1.27
USP40-203ENST00000427112 TCTEX1D1Q8N7M0 179 aa7.09□□□□□ -1.27
USP40-203ENST00000427112 FLYWCH2Q96CP2 140 aaKnown RBP7.09□□□□□ -1.27
USP40-203ENST00000427112 C1orf159Q96HA4 380 aa7.09□□□□□ -1.27
USP40-203ENST00000427112 ZPBPQ9BS86 351 aa7.09□□□□□ -1.27
USP40-203ENST00000427112 CHRDL1Q9BU40 450 aa7.09□□□□□ -1.27
USP40-203ENST00000427112 LPAR2Q9HBW0 351 aa7.09□□□□□ -1.27
USP40-203ENST00000427112 TMEM265A0A087WTH1 108 aa7.09□□□□□ -1.28
USP40-203ENST00000427112 IQCF6A8MYZ5 107 aa7.09□□□□□ -1.28
USP40-203ENST00000427112 GCGP01275 180 aa7.09□□□□□ -1.28
USP40-203ENST00000427112 RPEL1Q2QD12 228 aa7.09□□□□□ -1.28
USP40-203ENST00000427112 MDS2Q8NDY4 140 aa7.09□□□□□ -1.28
USP40-203ENST00000427112 NPIPB3Q92617 1050 aa7.09□□□□□ -1.28
USP40-203ENST00000427112 GMPPAQ96IJ6 420 aaPredicted RBP7.09□□□□□ -1.28
USP40-203ENST00000427112 IFI27L2Q9H2X8 130 aa7.09□□□□□ -1.28
USP40-203ENST00000427112 NPVFQ9HCQ7 196 aa7.09□□□□□ -1.28
USP40-203ENST00000427112 C15orf65H3BRN8 121 aa7.08□□□□□ -1.28
USP40-203ENST00000427112 SS18L1O75177 396 aaPredicted RBP7.08□□□□□ -1.28
USP40-203ENST00000427112 LY6HO94772 140 aa7.08□□□□□ -1.28
USP40-203ENST00000427112 CXorf1O96002 111 aa7.08□□□□□ -1.28
USP40-203ENST00000427112 ACP1P24666 158 aa7.08□□□□□ -1.28
USP40-203ENST00000427112 TIGITQ495A1 244 aa7.08□□□□□ -1.28
USP40-203ENST00000427112 Q6ZT83 130 aa7.08□□□□□ -1.28
USP40-203ENST00000427112 OR1B1Q8NGR6 318 aa7.08□□□□□ -1.28
USP40-203ENST00000427112 EAF1Q96JC9 268 aaPredicted RBP7.08□□□□□ -1.28
USP40-203ENST00000427112 RITA1Q96K30 269 aa7.08□□□□□ -1.28
USP40-203ENST00000427112 TMEM106BQ9NUM4 274 aa7.08□□□□□ -1.28
USP40-203ENST00000427112 PROCRQ9UNN8 238 aa7.08□□□□□ -1.28
USP40-203ENST00000427112 TLN2Q9Y4G6 2542 aa7.08□□□□□ -1.28
USP40-203ENST00000427112 GGTLC3B5MD39 225 aa7.08□□□□□ -1.28
USP40-203ENST00000427112 TDGF1P3P51864 188 aa7.08□□□□□ -1.28
USP40-203ENST00000427112 SCGB2A2Q13296 93 aa7.08□□□□□ -1.28
USP40-203ENST00000427112 TMEM242Q9NWH2 141 aa7.08□□□□□ -1.28
USP40-203ENST00000427112 PDE6DO43924 150 aa7.07□□□□□ -1.28
USP40-203ENST00000427112 CRYABP02511 175 aaKnown RBP7.07□□□□□ -1.28
USP40-203ENST00000427112 CCKARP32238 428 aa7.07□□□□□ -1.28
USP40-203ENST00000427112 RHOBP62745 196 aa7.07□□□□□ -1.28
USP40-203ENST00000427112 BHLHA15Q7RTS1 189 aaPredicted RBP7.07□□□□□ -1.28
USP40-203ENST00000427112 OR5R1Q8NH85 324 aa7.07□□□□□ -1.28
USP40-203ENST00000427112 NEUROG1Q92886 237 aa7.07□□□□□ -1.28
USP40-203ENST00000427112 HARBI1Q96MB7 349 aa7.07□□□□□ -1.28
USP40-203ENST00000427112 CITED1Q99966 193 aa7.07□□□□□ -1.28
USP40-203ENST00000427112 MRPL20Q9BYC9 149 aaKnown RBP7.07□□□□□ -1.28
USP40-203ENST00000427112 MRPL36Q9P0J6 103 aaKnown RBP7.07□□□□□ -1.28
USP40-203ENST00000427112 LSM4Q9Y4Z0 139 aaKnown RBP7.07□□□□□ -1.28
USP40-203ENST00000427112 SLC25A17O43808 307 aa7.07□□□□□ -1.28
USP40-203ENST00000427112 STAG3L2P0CL84 134 aa7.07□□□□□ -1.28
USP40-203ENST00000427112 STAG3L3P0CL85 134 aa7.07□□□□□ -1.28
USP40-203ENST00000427112 TNFAIP6P98066 277 aaPredicted RBP7.07□□□□□ -1.28
USP40-203ENST00000427112 TRIP6Q15654 476 aaKnown RBP7.07□□□□□ -1.28
USP40-203ENST00000427112 ACSF3Q4G176 576 aaPredicted RBP7.07□□□□□ -1.28
USP40-203ENST00000427112 SAMD13Q5VXD3 122 aa7.07□□□□□ -1.28
USP40-203ENST00000427112 LINC00596Q86U02 117 aa7.07□□□□□ -1.28
USP40-203ENST00000427112 SAP30LQ9HAJ7 183 aa7.07□□□□□ -1.28
USP40-203ENST00000427112 NRN1Q9NPD7 142 aa7.07□□□□□ -1.28
USP40-203ENST00000427112 POLQO75417 2590 aa7.07□□□□□ -1.28
USP40-203ENST00000427112 TMEM210A6NLX4 147 aa7.07□□□□□ -1.28
USP40-203ENST00000427112 LINC00869P0C866 280 aa7.07□□□□□ -1.28
USP40-203ENST00000427112 COX7A1P24310 79 aa7.07□□□□□ -1.28
USP40-203ENST00000427112 SRP14P37108 136 aaKnown RBP7.07□□□□□ -1.28
USP40-203ENST00000427112 SLAQ13239 276 aa7.07□□□□□ -1.28
USP40-203ENST00000427112 RAB31Q13636 194 aa7.07□□□□□ -1.28
USP40-203ENST00000427112 IBA57Q5T440 356 aaKnown RBP7.07□□□□□ -1.28
USP40-203ENST00000427112 SRSF8Q9BRL6 282 aaKnown RBP7.07□□□□□ -1.28
USP40-203ENST00000427112 COMMD5Q9GZQ3 224 aa7.07□□□□□ -1.28
USP40-203ENST00000427112 GAL3ST2Q9H3Q3 398 aa7.07□□□□□ -1.28
USP40-203ENST00000427112 KCNIP2Q9NS61 270 aa7.07□□□□□ -1.28
USP40-203ENST00000427112 TRBV6-6A0A0A6YYG2 114 aa7.06□□□□□ -1.28
USP40-203ENST00000427112 SAA1P0DJI8 122 aaPredicted RBP7.06□□□□□ -1.28
USP40-203ENST00000427112 CNTFRP26992 372 aa7.06□□□□□ -1.28
USP40-203ENST00000427112 FBLN7Q53RD9 439 aa7.06□□□□□ -1.28
USP40-203ENST00000427112 C16orf54Q6UWD8 224 aa7.06□□□□□ -1.28
USP40-203ENST00000427112 LINC00173Q6ZV60 143 aa7.06□□□□□ -1.28
USP40-203ENST00000427112 NIT1Q86X76 327 aa7.06□□□□□ -1.28
USP40-203ENST00000427112 UBALD2Q8IYN6 164 aa7.06□□□□□ -1.28
USP40-203ENST00000427112 OR52E5Q8NH55 327 aa7.06□□□□□ -1.28
USP40-203ENST00000427112 NEU1Q99519 415 aa7.06□□□□□ -1.28
USP40-203ENST00000427112 IDI2-AS1Q9NZ38 188 aa7.06□□□□□ -1.28
USP40-203ENST00000427112 CACNA1AO00555 2505 aa7.06□□□□□ -1.28
USP40-203ENST00000427112 PTPN13Q12923 2485 aa7.06□□□□□ -1.28
USP40-203ENST00000427112 J3QR89 54 aa7.06□□□□□ -1.28
USP40-203ENST00000427112 VDAC2P45880 294 aaPredicted RBP7.06□□□□□ -1.28
USP40-203ENST00000427112 KLF3P57682 345 aaPredicted RBP7.06□□□□□ -1.28
USP40-203ENST00000427112 WFDC3Q8IUB2 231 aa7.06□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 64.4 ms