RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 MYO18BQ8IUG5 2567 aa10.85□□□□□ -0.67
VPS54-203ENST00000409558 RNASE2P10153 161 aaKnown RBP10.84□□□□□ -0.67
VPS54-203ENST00000409558 NTF3P20783 257 aa10.84□□□□□ -0.67
VPS54-203ENST00000409558 CFHR2P36980 270 aa10.84□□□□□ -0.67
VPS54-203ENST00000409558 KLRD1Q13241 179 aa10.84□□□□□ -0.67
VPS54-203ENST00000409558 BATFQ16520 125 aa10.84□□□□□ -0.67
VPS54-203ENST00000409558 ANAPC16Q96DE5 110 aa10.84□□□□□ -0.67
VPS54-203ENST00000409558 SLC25A33Q9BSK2 321 aa10.84□□□□□ -0.67
VPS54-203ENST00000409558 RAB9BQ9NP90 201 aa10.84□□□□□ -0.67
VPS54-203ENST00000409558 IGHV3-23P01764 117 aa10.84□□□□□ -0.67
VPS54-203ENST00000409558 RBP4P02753 201 aa10.84□□□□□ -0.67
VPS54-203ENST00000409558 VWC2Q2TAL6 325 aa10.84□□□□□ -0.67
VPS54-203ENST00000409558 ADTRPQ96IZ2 230 aa10.84□□□□□ -0.67
VPS54-203ENST00000409558 A0A087X0M5 115 aa10.84□□□□□ -0.67
VPS54-203ENST00000409558 A0A1B0GX30 115 aa10.84□□□□□ -0.67
VPS54-203ENST00000409558 PRSS46E5RG02 174 aa10.84□□□□□ -0.67
VPS54-203ENST00000409558 MPDU1O75352 247 aa10.84□□□□□ -0.67
VPS54-203ENST00000409558 IGHV2-70P01814 119 aa10.84□□□□□ -0.67
VPS54-203ENST00000409558 CD3EP07766 207 aa10.84□□□□□ -0.67
VPS54-203ENST00000409558 TIGITQ495A1 244 aa10.84□□□□□ -0.67
VPS54-203ENST00000409558 GGTLC3B5MD39 225 aa10.83□□□□□ -0.68
VPS54-203ENST00000409558 PMCHP20382 165 aa10.83□□□□□ -0.68
VPS54-203ENST00000409558 TMEM183AQ8IXX5 376 aa10.83□□□□□ -0.68
VPS54-203ENST00000409558 MUC15Q8N387 334 aa10.83□□□□□ -0.68
VPS54-203ENST00000409558 LSM4Q9Y4Z0 139 aaKnown RBP10.83□□□□□ -0.68
VPS54-203ENST00000409558 NOTCH3Q9UM47 2321 aa10.83□□□□□ -0.68
VPS54-203ENST00000409558 DSCAML1Q8TD84 2053 aa10.83□□□□□ -0.68
VPS54-203ENST00000409558 LOXP28300 417 aaPredicted RBP10.83□□□□□ -0.68
VPS54-203ENST00000409558 LYZP61626 148 aa10.83□□□□□ -0.68
VPS54-203ENST00000409558 MMD2Q8IY49 270 aa10.83□□□□□ -0.68
VPS54-203ENST00000409558 OR4C13Q8NGP0 309 aa10.83□□□□□ -0.68
VPS54-203ENST00000409558 TECRQ9NZ01 308 aaKnown RBP10.83□□□□□ -0.68
VPS54-203ENST00000409558 ZNF835Q9Y2P0 537 aa10.83□□□□□ -0.68
VPS54-203ENST00000409558 GATA4P43694 442 aa10.83□□□□□ -0.68
VPS54-203ENST00000409558 TPPP3Q9BW30 176 aa10.83□□□□□ -0.68
VPS54-203ENST00000409558 SLC45A2Q9UMX9 530 aa10.83□□□□□ -0.68
VPS54-203ENST00000409558 FAM168AQ92567 244 aa10.82□□□□□ -0.68
VPS54-203ENST00000409558 RPEQ96AT9 228 aa10.82□□□□□ -0.68
VPS54-203ENST00000409558 PARD6GQ9BYG4 376 aaPredicted RBP10.82□□□□□ -0.68
VPS54-203ENST00000409558 TLN2Q9Y4G6 2542 aa10.82□□□□□ -0.68
VPS54-203ENST00000409558 TSTD3H0UI37 97 aa10.82□□□□□ -0.68
VPS54-203ENST00000409558 GPR6P46095 362 aaPredicted RBP10.82□□□□□ -0.68
VPS54-203ENST00000409558 LINC00305Q7Z4B0 112 aa10.82□□□□□ -0.68
VPS54-203ENST00000409558 TMEM144Q7Z5S9 345 aa10.82□□□□□ -0.68
VPS54-203ENST00000409558 EAF1Q96JC9 268 aaPredicted RBP10.82□□□□□ -0.68
VPS54-203ENST00000409558 TMEM242Q9NWH2 141 aa10.82□□□□□ -0.68
VPS54-203ENST00000409558 A0A1W2PPI3 338 aa10.82□□□□□ -0.68
VPS54-203ENST00000409558 NDUFS7O75251 213 aa10.82□□□□□ -0.68
VPS54-203ENST00000409558 MAS1LP35410 378 aa10.82□□□□□ -0.68
VPS54-203ENST00000409558 CD69Q07108 199 aa10.82□□□□□ -0.68
VPS54-203ENST00000409558 LY6DQ14210 128 aa10.82□□□□□ -0.68
VPS54-203ENST00000409558 C10orf113Q5VZT2 155 aa10.82□□□□□ -0.68
VPS54-203ENST00000409558 OR52E5Q8NH55 327 aa10.82□□□□□ -0.68
VPS54-203ENST00000409558 MRPL18Q9H0U6 180 aaKnown RBP10.82□□□□□ -0.68
VPS54-203ENST00000409558 PRDM13Q9H4Q3 707 aa10.82□□□□□ -0.68
VPS54-203ENST00000409558 TDGF1P3P51864 188 aa10.81□□□□□ -0.68
VPS54-203ENST00000409558 MS4A10Q96PG2 267 aa10.81□□□□□ -0.68
VPS54-203ENST00000409558 SSBP4Q9BWG4 385 aaPredicted RBP10.81□□□□□ -0.68
VPS54-203ENST00000409558 RPL29P47914 159 aaKnown RBP10.81□□□□□ -0.68
VPS54-203ENST00000409558 KRTDAPP60985 99 aa10.81□□□□□ -0.68
VPS54-203ENST00000409558 FAM222BQ8WU58 562 aa10.81□□□□□ -0.68
VPS54-203ENST00000409558 ZNF503Q96F45 646 aa10.81□□□□□ -0.68
VPS54-203ENST00000409558 ELOA3CA0A087WX78 387 aaPredicted RBP10.81□□□□□ -0.68
VPS54-203ENST00000409558 TRAV8-1A0A0A6YYK1 113 aa10.81□□□□□ -0.68
VPS54-203ENST00000409558 A0A1B0GV90 55 aa10.81□□□□□ -0.68
VPS54-203ENST00000409558 SLC25A5P05141 298 aaKnown RBP10.81□□□□□ -0.68
VPS54-203ENST00000409558 GZMBP10144 247 aa10.81□□□□□ -0.68
VPS54-203ENST00000409558 RBPJQ06330 500 aa10.81□□□□□ -0.68
VPS54-203ENST00000409558 TOMM20LQ6UXN7 152 aa10.81□□□□□ -0.68
VPS54-203ENST00000409558 C1orf174Q8IYL3 243 aa10.81□□□□□ -0.68
VPS54-203ENST00000409558 FAM19A2Q8N3H0 131 aa10.81□□□□□ -0.68
VPS54-203ENST00000409558 DNAJC4Q9NNZ3 241 aa10.81□□□□□ -0.68
VPS54-203ENST00000409558 NGBQ9NPG2 151 aa10.81□□□□□ -0.68
VPS54-203ENST00000409558 ELOVL5Q9NYP7 299 aa10.81□□□□□ -0.68
VPS54-203ENST00000409558 WASHC3Q9Y3C0 194 aa10.81□□□□□ -0.68
VPS54-203ENST00000409558 CRYBG3Q68DQ2 2970 aa10.8□□□□□ -0.68
VPS54-203ENST00000409558 SHISA9B4DS77 424 aa10.8□□□□□ -0.68
VPS54-203ENST00000409558 CRISP2P16562 243 aa10.8□□□□□ -0.68
VPS54-203ENST00000409558 MMDQ15546 238 aa10.8□□□□□ -0.68
VPS54-203ENST00000409558 VMA21Q3ZAQ7 101 aa10.8□□□□□ -0.68
VPS54-203ENST00000409558 TMEM18Q96B42 140 aa10.8□□□□□ -0.68
VPS54-203ENST00000409558 PAXXQ9BUH6 204 aa10.8□□□□□ -0.68
VPS54-203ENST00000409558 IGHV1-8P0DP01 117 aa10.8□□□□□ -0.68
VPS54-203ENST00000409558 HIST1H1BP16401 226 aaKnown RBP10.8□□□□□ -0.68
VPS54-203ENST00000409558 FAM169BQ8N8A8 192 aa10.8□□□□□ -0.68
VPS54-203ENST00000409558 ST6GALNAC3Q8NDV1 305 aa10.8□□□□□ -0.68
VPS54-203ENST00000409558 TNFRSF19Q9NS68 423 aa10.8□□□□□ -0.68
VPS54-203ENST00000409558 PPIAL4CA0A0B4J2A2 164 aa10.8□□□□□ -0.68
VPS54-203ENST00000409558 NCBP2LA6PVI3 153 aaKnown RBP10.8□□□□□ -0.68
VPS54-203ENST00000409558 C8orf88P0DMB2 117 aa10.8□□□□□ -0.68
VPS54-203ENST00000409558 PPIAL4GP0DN37 164 aa10.8□□□□□ -0.68
VPS54-203ENST00000409558 ATOH7Q8N100 152 aa10.8□□□□□ -0.68
VPS54-203ENST00000409558 CDKN1AP38936 164 aa10.8□□□□□ -0.68
VPS54-203ENST00000409558 PPOXP50336 477 aa10.8□□□□□ -0.68
VPS54-203ENST00000409558 ZNF137PP52743 207 aa10.8□□□□□ -0.68
VPS54-203ENST00000409558 CASP6P55212 293 aa10.8□□□□□ -0.68
VPS54-203ENST00000409558 PRR20EP86478 221 aa10.8□□□□□ -0.68
VPS54-203ENST00000409558 PRR20CP86479 221 aa10.8□□□□□ -0.68
VPS54-203ENST00000409558 PRR20DP86480 221 aa10.8□□□□□ -0.68
VPS54-203ENST00000409558 PRR20BP86481 221 aa10.8□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 62.3 ms