RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 ASCL3Q9NQ33 180 aa15.02■□□□□ -0
CCDC3-201ENST00000378825 ZNF331Q9NQX6 463 aaPredicted RBP15.02■□□□□ -0
CCDC3-201ENST00000378825 CLCF1Q9UBD9 225 aa15.02■□□□□ -0
CCDC3-201ENST00000378825 GVINP1Q7Z2Y8 2422 aa15.02■□□□□ -0
CCDC3-201ENST00000378825 CSMD1Q96PZ7 3565 aa15.02■□□□□ -0
CCDC3-201ENST00000378825 IGHV1-18A0A0C4DH31 117 aa15.02□□□□□ -0.01
CCDC3-201ENST00000378825 IZUMO1RA6ND01 250 aa15.02□□□□□ -0.01
CCDC3-201ENST00000378825 E7EUB6 86 aa15.02□□□□□ -0.01
CCDC3-201ENST00000378825 HOXC12P31275 282 aa15.02□□□□□ -0.01
CCDC3-201ENST00000378825 UBE2L3P68036 154 aaKnown RBP15.02□□□□□ -0.01
CCDC3-201ENST00000378825 TRAT1Q6PIZ9 186 aa15.02□□□□□ -0.01
CCDC3-201ENST00000378825 VHLLQ6RSH7 139 aa15.02□□□□□ -0.01
CCDC3-201ENST00000378825 C9orf106Q8NAJ2 232 aa15.02□□□□□ -0.01
CCDC3-201ENST00000378825 DEFB124Q8NES8 71 aa15.02□□□□□ -0.01
CCDC3-201ENST00000378825 NUP35Q8NFH5 326 aa15.02□□□□□ -0.01
CCDC3-201ENST00000378825 FAM167A-AS1Q96KT0 104 aa15.02□□□□□ -0.01
CCDC3-201ENST00000378825 OR2V2Q96R30 315 aa15.02□□□□□ -0.01
CCDC3-201ENST00000378825 GNG5P63218 68 aa15.01□□□□□ -0.01
CCDC3-201ENST00000378825 SLC25A2Q9BXI2 301 aa15.01□□□□□ -0.01
CCDC3-201ENST00000378825 RIF1Q5UIP0 2472 aaKnown RBP15.01□□□□□ -0.01
CCDC3-201ENST00000378825 FAM181BA6NEQ2 426 aa15.01□□□□□ -0.01
CCDC3-201ENST00000378825 HSBP1O75506 76 aa15.01□□□□□ -0.01
CCDC3-201ENST00000378825 M0R2Z0 102 aa15.01□□□□□ -0.01
CCDC3-201ENST00000378825 ZNF841Q6ZN19 808 aa15.01□□□□□ -0.01
CCDC3-201ENST00000378825 LINC00173Q6ZV60 143 aa15.01□□□□□ -0.01
CCDC3-201ENST00000378825 TEX50A0A1B0GTY4 177 aa15□□□□□ -0.01
CCDC3-201ENST00000378825 SPRY3O43610 288 aa15□□□□□ -0.01
CCDC3-201ENST00000378825 CGB3P0DN86 165 aa15□□□□□ -0.01
CCDC3-201ENST00000378825 CGB7P0DN87 165 aa15□□□□□ -0.01
CCDC3-201ENST00000378825 SELENOVP59797 346 aa15□□□□□ -0.01
CCDC3-201ENST00000378825 RBX1P62877 108 aa15□□□□□ -0.01
CCDC3-201ENST00000378825 NUDT10Q8NFP7 164 aa15□□□□□ -0.01
CCDC3-201ENST00000378825 NUDT11Q96G61 164 aa15□□□□□ -0.01
CCDC3-201ENST00000378825 TNFRSF19Q9NS68 423 aa15□□□□□ -0.01
CCDC3-201ENST00000378825 C8orf88P0DMB2 117 aa15□□□□□ -0.01
CCDC3-201ENST00000378825 OR4F17Q8NGA8 305 aa15□□□□□ -0.01
CCDC3-201ENST00000378825 URB1-AS1Q96HZ7 61 aa15□□□□□ -0.01
CCDC3-201ENST00000378825 MCRIP2Q9BUT9 160 aaKnown RBP15□□□□□ -0.01
CCDC3-201ENST00000378825 CEACAM8P31997 349 aaPredicted RBP14.99□□□□□ -0.01
CCDC3-201ENST00000378825 SPTBN2O15020 2390 aa14.99□□□□□ -0.01
CCDC3-201ENST00000378825 TACC2O95359 2948 aa14.99□□□□□ -0.01
CCDC3-201ENST00000378825 LOC105371242A0A075B767 164 aa14.99□□□□□ -0.01
CCDC3-201ENST00000378825 FOXA3P55318 350 aaPredicted RBP14.99□□□□□ -0.01
CCDC3-201ENST00000378825 PRCDQ00LT1 54 aa14.99□□□□□ -0.01
CCDC3-201ENST00000378825 CR1LQ2VPA4 569 aa14.99□□□□□ -0.01
CCDC3-201ENST00000378825 AMMECR1Q9Y4X0 333 aaPredicted RBP14.99□□□□□ -0.01
CCDC3-201ENST00000378825 C2orf70A6NJV1 201 aa14.98□□□□□ -0.01
CCDC3-201ENST00000378825 RNASE2P10153 161 aaKnown RBP14.98□□□□□ -0.01
CCDC3-201ENST00000378825 C19orf35Q6ZS72 473 aa14.98□□□□□ -0.01
CCDC3-201ENST00000378825 MBD6Q96DN6 1003 aa14.98□□□□□ -0.01
CCDC3-201ENST00000378825 COX11Q9Y6N1 276 aa14.98□□□□□ -0.01
CCDC3-201ENST00000378825 A0A1W2PRE2 83 aa14.98□□□□□ -0.01
CCDC3-201ENST00000378825 PSMB11A5LHX3 300 aa14.98□□□□□ -0.01
CCDC3-201ENST00000378825 HIGD1CA8MV81 97 aa14.98□□□□□ -0.01
CCDC3-201ENST00000378825 CT45A6P0DMU7 189 aa14.98□□□□□ -0.01
CCDC3-201ENST00000378825 CT45A5P0DMU8 189 aa14.98□□□□□ -0.01
CCDC3-201ENST00000378825 CT45A7P0DMV0 189 aa14.98□□□□□ -0.01
CCDC3-201ENST00000378825 PRB4P10163 310 aaPredicted RBP14.98□□□□□ -0.01
CCDC3-201ENST00000378825 KIR2DS2P43631 304 aa14.98□□□□□ -0.01
CCDC3-201ENST00000378825 RPL19P84098 196 aaKnown RBP14.98□□□□□ -0.01
CCDC3-201ENST00000378825 C10orf55Q5SWW7 151 aa14.98□□□□□ -0.01
CCDC3-201ENST00000378825 IGHV2-26A0A0B4J1V2 119 aa14.97□□□□□ -0.01
CCDC3-201ENST00000378825 UPK2O00526 184 aa14.97□□□□□ -0.01
CCDC3-201ENST00000378825 SAA1P0DJI8 122 aaPredicted RBP14.97□□□□□ -0.01
CCDC3-201ENST00000378825 TCF24Q7RTU0 167 aa14.97□□□□□ -0.01
CCDC3-201ENST00000378825 KLHDC1Q8N7A1 406 aa14.97□□□□□ -0.01
CCDC3-201ENST00000378825 ORAOV1Q8WV07 137 aa14.97□□□□□ -0.01
CCDC3-201ENST00000378825 ITLN1Q8WWA0 313 aa14.97□□□□□ -0.01
CCDC3-201ENST00000378825 OR8B2Q96RD0 313 aa14.97□□□□□ -0.01
CCDC3-201ENST00000378825 ALKBH7Q9BT30 221 aaPredicted RBP14.97□□□□□ -0.01
CCDC3-201ENST00000378825 MRPL36Q9P0J6 103 aaKnown RBP14.97□□□□□ -0.01
CCDC3-201ENST00000378825 RPH3ALQ9UNE2 315 aa14.97□□□□□ -0.01
CCDC3-201ENST00000378825 RAI1Q7Z5J4 1906 aaPredicted RBP14.97□□□□□ -0.01
CCDC3-201ENST00000378825 RUSC1-AS1Q66K80 236 aa14.97□□□□□ -0.01
CCDC3-201ENST00000378825 OR2D3Q8NGH3 330 aa14.97□□□□□ -0.01
CCDC3-201ENST00000378825 CORO2AQ92828 525 aa14.97□□□□□ -0.01
CCDC3-201ENST00000378825 KBTBD11-OT1A0A1B0GTJ5 212 aa14.96□□□□□ -0.01
CCDC3-201ENST00000378825 NKX6-3A6NJ46 265 aa14.96□□□□□ -0.01
CCDC3-201ENST00000378825 REG1BP48304 166 aa14.96□□□□□ -0.01
CCDC3-201ENST00000378825 TAS2R45P59539 299 aa14.96□□□□□ -0.01
CCDC3-201ENST00000378825 LEMD1Q68G75 181 aa14.96□□□□□ -0.01
CCDC3-201ENST00000378825 ARL2-SNX15V9GYD0 113 aa14.96□□□□□ -0.01
CCDC3-201ENST00000378825 ATMQ13315 3056 aa14.96□□□□□ -0.01
CCDC3-201ENST00000378825 AKAP13Q12802 2813 aa14.96□□□□□ -0.01
CCDC3-201ENST00000378825 TRAV9-2A0A087WT02 112 aa14.96□□□□□ -0.01
CCDC3-201ENST00000378825 H3BTX0 84 aa14.96□□□□□ -0.01
CCDC3-201ENST00000378825 GUSBP1Q15486 140 aa14.96□□□□□ -0.01
CCDC3-201ENST00000378825 PATE2Q6UY27 113 aa14.96□□□□□ -0.01
CCDC3-201ENST00000378825 LINC00322Q6ZN03 302 aaPredicted RBP14.96□□□□□ -0.01
CCDC3-201ENST00000378825 FAM216BQ8N7L0 139 aa14.96□□□□□ -0.01
CCDC3-201ENST00000378825 OR8B3Q8NGG8 313 aa14.96□□□□□ -0.01
CCDC3-201ENST00000378825 ZZEF1O43149 2961 aa14.96□□□□□ -0.02
CCDC3-201ENST00000378825 ZFHX2Q9C0A1 2572 aaPredicted RBP14.95□□□□□ -0.02
CCDC3-201ENST00000378825 REG1AP05451 166 aa14.95□□□□□ -0.02
CCDC3-201ENST00000378825 FTH1P19P0C7X4 201 aa14.95□□□□□ -0.02
CCDC3-201ENST00000378825 UBE2G1P62253 170 aa14.95□□□□□ -0.02
CCDC3-201ENST00000378825 UBE2V1Q13404 147 aa14.95□□□□□ -0.02
CCDC3-201ENST00000378825 TBR1Q16650 682 aa14.95□□□□□ -0.02
CCDC3-201ENST00000378825 MBNL2Q5VZF2 373 aaKnown RBP14.95□□□□□ -0.02
CCDC3-201ENST00000378825 Q71RC1 249 aaPredicted RBP14.95□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms