RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 RCC2Q9P258 522 aaKnown RBP3.35□□□□□ -1.87
USH2A-202ENST00000366942 TRDV1A0A1B0GX56 115 aa3.35□□□□□ -1.87
USH2A-202ENST00000366942 TMEM235A6NFC5 223 aa3.35□□□□□ -1.87
USH2A-202ENST00000366942 KRBOX1C9JBD0 128 aa3.35□□□□□ -1.87
USH2A-202ENST00000366942 G3V3Q6 166 aa3.35□□□□□ -1.87
USH2A-202ENST00000366942 PHOX2AO14813 284 aa3.35□□□□□ -1.87
USH2A-202ENST00000366942 RBM3P98179 157 aaKnown RBP3.35□□□□□ -1.87
USH2A-202ENST00000366942 Q6AWC8 147 aa3.35□□□□□ -1.87
USH2A-202ENST00000366942 DRAXINQ8NBI3 349 aaPredicted RBP3.35□□□□□ -1.87
USH2A-202ENST00000366942 WFDC12Q8WWY7 111 aa3.35□□□□□ -1.87
USH2A-202ENST00000366942 IGF2BP2-AS1Q96M15 143 aa3.35□□□□□ -1.87
USH2A-202ENST00000366942 SCGB3A1Q96QR1 104 aa3.35□□□□□ -1.87
USH2A-202ENST00000366942 SMIM7Q9BQ49 75 aa3.35□□□□□ -1.87
USH2A-202ENST00000366942 THAP7Q9BT49 309 aaPredicted RBP3.35□□□□□ -1.87
USH2A-202ENST00000366942 MANBALQ9NQG1 85 aa3.35□□□□□ -1.87
USH2A-202ENST00000366942 FRRS1LQ9P0K9 344 aa3.35□□□□□ -1.87
USH2A-202ENST00000366942 V9GYS6 101 aa3.35□□□□□ -1.87
USH2A-202ENST00000366942 NXPH3O95157 252 aa3.35□□□□□ -1.87
USH2A-202ENST00000366942 C1QCP02747 245 aa3.35□□□□□ -1.87
USH2A-202ENST00000366942 COL8A2P25067 703 aa3.35□□□□□ -1.87
USH2A-202ENST00000366942 RND3P61587 244 aa3.35□□□□□ -1.87
USH2A-202ENST00000366942 ZNF474Q6S9Z5 364 aaPredicted RBP3.35□□□□□ -1.87
USH2A-202ENST00000366942 IL25Q9H293 177 aa3.35□□□□□ -1.87
USH2A-202ENST00000366942 LINC00527Q9UJ94 153 aa3.35□□□□□ -1.87
USH2A-202ENST00000366942 LY96Q9Y6Y9 160 aa3.35□□□□□ -1.87
USH2A-202ENST00000366942 LTN1O94822 1766 aa3.34□□□□□ -1.87
USH2A-202ENST00000366942 PPYP01298 95 aa3.34□□□□□ -1.87
USH2A-202ENST00000366942 IGHV4-59P01825 116 aa3.34□□□□□ -1.87
USH2A-202ENST00000366942 CKS2P33552 79 aa3.34□□□□□ -1.87
USH2A-202ENST00000366942 GGNQ86UU5 652 aa3.34□□□□□ -1.87
USH2A-202ENST00000366942 C16orf74Q96GX8 76 aa3.34□□□□□ -1.87
USH2A-202ENST00000366942 IMMP2LQ96T52 175 aa3.34□□□□□ -1.87
USH2A-202ENST00000366942 ISG20L2Q9H9L3 353 aaKnown RBP3.34□□□□□ -1.87
USH2A-202ENST00000366942 MYO10Q9HD67 2058 aa3.34□□□□□ -1.87
USH2A-202ENST00000366942 WNK2Q9Y3S1 2297 aa3.34□□□□□ -1.87
USH2A-202ENST00000366942 LRCOL1A6NCL2 159 aa3.34□□□□□ -1.87
USH2A-202ENST00000366942 FABP5P3A8MUU1 101 aa3.34□□□□□ -1.87
USH2A-202ENST00000366942 M0R381 172 aa3.34□□□□□ -1.87
USH2A-202ENST00000366942 YPEL1O60688 119 aa3.34□□□□□ -1.87
USH2A-202ENST00000366942 SIX6O95475 246 aa3.34□□□□□ -1.87
USH2A-202ENST00000366942 MT-ND6P03923 174 aa3.34□□□□□ -1.87
USH2A-202ENST00000366942 C8orf88P0DMB2 117 aa3.34□□□□□ -1.87
USH2A-202ENST00000366942 GLIPR1P48060 266 aa3.34□□□□□ -1.87
USH2A-202ENST00000366942 PSG3Q16557 428 aa3.34□□□□□ -1.87
USH2A-202ENST00000366942 SLC7A5P1Q8MH63 180 aa3.34□□□□□ -1.87
USH2A-202ENST00000366942 GTSF1Q8WW33 167 aa3.34□□□□□ -1.87
USH2A-202ENST00000366942 YPEL2Q96QA6 119 aa3.34□□□□□ -1.87
USH2A-202ENST00000366942 EBF4Q9BQW3 602 aa3.34□□□□□ -1.87
USH2A-202ENST00000366942 ST20Q9HBF5 79 aa3.34□□□□□ -1.87
USH2A-202ENST00000366942 NRXN3Q9Y4C0 1643 aa3.34□□□□□ -1.87
USH2A-202ENST00000366942 CITO14578 2027 aa3.34□□□□□ -1.87
USH2A-202ENST00000366942 PCNX2A6NKB5 2137 aa3.34□□□□□ -1.87
USH2A-202ENST00000366942 CCDC88AQ3V6T2 1871 aa3.34□□□□□ -1.87
USH2A-202ENST00000366942 TMSB15BA0A087X1C1 80 aa3.34□□□□□ -1.87
USH2A-202ENST00000366942 IGLV3-32A0A0A0MS00 114 aa3.34□□□□□ -1.87
USH2A-202ENST00000366942 LY6G6EA0A0G2JKS1 128 aa3.34□□□□□ -1.87
USH2A-202ENST00000366942 ETDCA0A1B0GVM5 59 aa3.34□□□□□ -1.87
USH2A-202ENST00000366942 SRSF10O75494 262 aaKnown RBP3.34□□□□□ -1.87
USH2A-202ENST00000366942 GASTP01350 101 aa3.34□□□□□ -1.87
USH2A-202ENST00000366942 MIFP14174 115 aa3.34□□□□□ -1.87
USH2A-202ENST00000366942 RPS10P46783 165 aaKnown RBP3.34□□□□□ -1.87
USH2A-202ENST00000366942 UBE2D3P61077 147 aa3.34□□□□□ -1.87
USH2A-202ENST00000366942 REG3GQ6UW15 175 aa3.34□□□□□ -1.87
USH2A-202ENST00000366942 LYPD6Q86Y78 171 aa3.34□□□□□ -1.87
USH2A-202ENST00000366942 OR10G4Q8NGN3 311 aa3.34□□□□□ -1.87
USH2A-202ENST00000366942 OR10G9Q8NGN4 311 aa3.34□□□□□ -1.87
USH2A-202ENST00000366942 OR10G7Q8NGN6 311 aa3.34□□□□□ -1.87
USH2A-202ENST00000366942 HIVEP3Q5T1R4 2406 aa3.34□□□□□ -1.87
USH2A-202ENST00000366942 ROS1P08922 2347 aa3.34□□□□□ -1.87
USH2A-202ENST00000366942 A0A1W2PQL4 384 aaPredicted RBP3.34□□□□□ -1.88
USH2A-202ENST00000366942 PDE6DO43924 150 aa3.34□□□□□ -1.88
USH2A-202ENST00000366942 ANGP03950 147 aaKnown RBP3.34□□□□□ -1.88
USH2A-202ENST00000366942 ERGP11308 486 aa3.34□□□□□ -1.88
USH2A-202ENST00000366942 HOXA5P20719 270 aa3.34□□□□□ -1.88
USH2A-202ENST00000366942 ZNF562Q6V9R5 426 aa3.34□□□□□ -1.88
USH2A-202ENST00000366942 GLDNQ6ZMI3 551 aaPredicted RBP3.34□□□□□ -1.88
USH2A-202ENST00000366942 C10orf111Q8N326 155 aa3.34□□□□□ -1.88
USH2A-202ENST00000366942 ARL6IP6Q8N6S5 226 aa3.34□□□□□ -1.88
USH2A-202ENST00000366942 RNF125Q96EQ8 232 aa3.34□□□□□ -1.88
USH2A-202ENST00000366942 DEPPQ9NTK1 212 aa3.34□□□□□ -1.88
USH2A-202ENST00000366942 TCF20Q9UGU0 1960 aaKnown RBP3.34□□□□□ -1.88
USH2A-202ENST00000366942 GAGE12BA1L429 117 aa3.34□□□□□ -1.88
USH2A-202ENST00000366942 IFITM10A6NMD0 228 aa3.34□□□□□ -1.88
USH2A-202ENST00000366942 LYRM1O43325 122 aa3.34□□□□□ -1.88
USH2A-202ENST00000366942 GAGE7O76087 117 aa3.34□□□□□ -1.88
USH2A-202ENST00000366942 GAGE12FP0CL80 117 aa3.34□□□□□ -1.88
USH2A-202ENST00000366942 GAGE12GP0CL81 117 aa3.34□□□□□ -1.88
USH2A-202ENST00000366942 GAGE12IP0CL82 117 aa3.34□□□□□ -1.88
USH2A-202ENST00000366942 ID3Q02535 119 aa3.34□□□□□ -1.88
USH2A-202ENST00000366942 KLRD1Q13241 179 aa3.34□□□□□ -1.88
USH2A-202ENST00000366942 ZNF324BQ6AW86 544 aaPredicted RBP3.34□□□□□ -1.88
USH2A-202ENST00000366942 SFTA2Q6UW10 78 aa3.34□□□□□ -1.88
USH2A-202ENST00000366942 H1FOOQ8IZA3 346 aaPredicted RBP3.34□□□□□ -1.88
USH2A-202ENST00000366942 FGF20Q9NP95 211 aaPredicted RBP3.34□□□□□ -1.88
USH2A-202ENST00000366942 FAM236DA0A1B0GTK5 79 aa3.33□□□□□ -1.88
USH2A-202ENST00000366942 SMIM30A4D0T7 59 aa3.33□□□□□ -1.88
USH2A-202ENST00000366942 C1orf196B1AJZ1 125 aa3.33□□□□□ -1.88
USH2A-202ENST00000366942 NTN1O95631 604 aa3.33□□□□□ -1.88
USH2A-202ENST00000366942 FAM236CP0DP71 79 aa3.33□□□□□ -1.88
USH2A-202ENST00000366942 LINC00158P58513 81 aa3.33□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms