RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 FXYD3Q14802 87 aa8.33□□□□□ -1.08
LIMA1-201ENST00000341247 TMEM30BQ3MIR4 351 aa8.33□□□□□ -1.08
LIMA1-201ENST00000341247 C9orf152Q5JTZ5 239 aa8.33□□□□□ -1.08
LIMA1-201ENST00000341247 PQLC2Q6ZP29 291 aa8.33□□□□□ -1.08
LIMA1-201ENST00000341247 TMEM167AQ8TBQ9 72 aa8.33□□□□□ -1.08
LIMA1-201ENST00000341247 PACRGQ96M98 296 aaPredicted RBP8.33□□□□□ -1.08
LIMA1-201ENST00000341247 IMMP2LQ96T52 175 aa8.33□□□□□ -1.08
LIMA1-201ENST00000341247 TECRQ9NZ01 308 aaKnown RBP8.33□□□□□ -1.08
LIMA1-201ENST00000341247 INSIG2Q9Y5U4 225 aa8.33□□□□□ -1.08
LIMA1-201ENST00000341247 PPIAL4CA0A0B4J2A2 164 aa8.33□□□□□ -1.08
LIMA1-201ENST00000341247 PPIAL4GP0DN37 164 aa8.33□□□□□ -1.08
LIMA1-201ENST00000341247 MGST1P10620 155 aaKnown RBP8.33□□□□□ -1.08
LIMA1-201ENST00000341247 ARF6P62330 175 aa8.33□□□□□ -1.08
LIMA1-201ENST00000341247 ZNF672Q499Z4 452 aaPredicted RBP8.33□□□□□ -1.08
LIMA1-201ENST00000341247 PNKDQ8N490 385 aa8.33□□□□□ -1.08
LIMA1-201ENST00000341247 OR5AU1Q8NGC0 362 aa8.33□□□□□ -1.08
LIMA1-201ENST00000341247 OR10G8Q8NGN5 311 aa8.33□□□□□ -1.08
LIMA1-201ENST00000341247 MSRB2Q9Y3D2 182 aa8.33□□□□□ -1.08
LIMA1-201ENST00000341247 TRAV20A0A0B4J274 112 aa8.33□□□□□ -1.08
LIMA1-201ENST00000341247 CA7P43166 264 aa8.33□□□□□ -1.08
LIMA1-201ENST00000341247 TCL1AP56279 114 aa8.33□□□□□ -1.08
LIMA1-201ENST00000341247 ERVFC1-1P60608 527 aa8.33□□□□□ -1.08
LIMA1-201ENST00000341247 UBE2L3P68036 154 aaKnown RBP8.33□□□□□ -1.08
LIMA1-201ENST00000341247 PLGLAQ15195 96 aa8.33□□□□□ -1.08
LIMA1-201ENST00000341247 TEX38Q6PEX7 206 aa8.33□□□□□ -1.08
LIMA1-201ENST00000341247 VSTM2AQ8TAG5 236 aa8.33□□□□□ -1.08
LIMA1-201ENST00000341247 HIST1H2BLQ99880 126 aa8.33□□□□□ -1.08
LIMA1-201ENST00000341247 FBXL15Q9H469 300 aa8.33□□□□□ -1.08
LIMA1-201ENST00000341247 RPH3ALQ9UNE2 315 aa8.33□□□□□ -1.08
LIMA1-201ENST00000341247 HILPDAQ9Y5L2 63 aa8.33□□□□□ -1.08
LIMA1-201ENST00000341247 TRAPPC1Q9Y5R8 145 aa8.33□□□□□ -1.08
LIMA1-201ENST00000341247 PIEZO1Q92508 2521 aa8.33□□□□□ -1.08
LIMA1-201ENST00000341247 GGTLC3B5MD39 225 aa8.32□□□□□ -1.08
LIMA1-201ENST00000341247 COX7A2P2O60397 106 aa8.32□□□□□ -1.08
LIMA1-201ENST00000341247 NHLH1Q02575 133 aa8.32□□□□□ -1.08
LIMA1-201ENST00000341247 CENPWQ5EE01 88 aa8.32□□□□□ -1.08
LIMA1-201ENST00000341247 PYGO2Q9BRQ0 406 aa8.32□□□□□ -1.08
LIMA1-201ENST00000341247 RNASE7Q9H1E1 156 aaKnown RBP8.32□□□□□ -1.08
LIMA1-201ENST00000341247 HELTA6NFD8 242 aa8.32□□□□□ -1.08
LIMA1-201ENST00000341247 LY6DQ14210 128 aa8.32□□□□□ -1.08
LIMA1-201ENST00000341247 BLNKQ8WV28 456 aa8.32□□□□□ -1.08
LIMA1-201ENST00000341247 RPEQ96AT9 228 aa8.32□□□□□ -1.08
LIMA1-201ENST00000341247 SLC25A33Q9BSK2 321 aa8.32□□□□□ -1.08
LIMA1-201ENST00000341247 TRAV34A0A0B4J273 112 aa8.32□□□□□ -1.08
LIMA1-201ENST00000341247 A0A1W2PN81 502 aa8.32□□□□□ -1.08
LIMA1-201ENST00000341247 GRIFINA4D1Z8 144 aa8.32□□□□□ -1.08
LIMA1-201ENST00000341247 GGCTO75223 188 aaKnown RBP8.32□□□□□ -1.08
LIMA1-201ENST00000341247 CBLN1P23435 193 aa8.32□□□□□ -1.08
LIMA1-201ENST00000341247 GNG4P50150 75 aa8.32□□□□□ -1.08
LIMA1-201ENST00000341247 TMEM249Q2WGJ8 235 aa8.32□□□□□ -1.08
LIMA1-201ENST00000341247 LEMD1Q68G75 181 aa8.32□□□□□ -1.08
LIMA1-201ENST00000341247 OR1B1Q8NGR6 318 aa8.32□□□□□ -1.08
LIMA1-201ENST00000341247 OR51M1Q9H341 326 aa8.32□□□□□ -1.08
LIMA1-201ENST00000341247 ZNF355PQ9NSJ1 428 aa8.32□□□□□ -1.08
LIMA1-201ENST00000341247 KAAG1Q9UBP8 84 aa8.32□□□□□ -1.08
LIMA1-201ENST00000341247 PITPNC1Q9UKF7 332 aa8.32□□□□□ -1.08
LIMA1-201ENST00000341247 FCN1O00602 326 aa8.31□□□□□ -1.08
LIMA1-201ENST00000341247 SRP14P37108 136 aaKnown RBP8.31□□□□□ -1.08
LIMA1-201ENST00000341247 ADORA2A-AS1P86434 159 aa8.31□□□□□ -1.08
LIMA1-201ENST00000341247 KLRD1Q13241 179 aa8.31□□□□□ -1.08
LIMA1-201ENST00000341247 OR1P1Q8NH06 330 aa8.31□□□□□ -1.08
LIMA1-201ENST00000341247 EAF1Q96JC9 268 aaPredicted RBP8.31□□□□□ -1.08
LIMA1-201ENST00000341247 PRO1933Q9H354 126 aa8.31□□□□□ -1.08
LIMA1-201ENST00000341247 DNAJC4Q9NNZ3 241 aa8.31□□□□□ -1.08
LIMA1-201ENST00000341247 SERTAD4Q9NUC0 356 aa8.31□□□□□ -1.08
LIMA1-201ENST00000341247 PKD1L2Q7Z442 2459 aa8.31□□□□□ -1.08
LIMA1-201ENST00000341247 C8orf88P0DMB2 117 aa8.31□□□□□ -1.08
LIMA1-201ENST00000341247 ELOA3CA0A087WX78 387 aaPredicted RBP8.31□□□□□ -1.08
LIMA1-201ENST00000341247 IGHV1-3A0A0C4DH29 117 aa8.31□□□□□ -1.08
LIMA1-201ENST00000341247 TGOLN2O43493 480 aa8.31□□□□□ -1.08
LIMA1-201ENST00000341247 RPL27AP46776 148 aaKnown RBP8.31□□□□□ -1.08
LIMA1-201ENST00000341247 SUB1P53999 127 aaKnown RBP eCLIP8.31□□□□□ -1.08
LIMA1-201ENST00000341247 MFAP2P55001 183 aa8.31□□□□□ -1.08
LIMA1-201ENST00000341247 TAS2R45P59539 299 aa8.31□□□□□ -1.08
LIMA1-201ENST00000341247 PRR31Q5SQ13 230 aa8.31□□□□□ -1.08
LIMA1-201ENST00000341247 C10orf113Q5VZT2 155 aa8.31□□□□□ -1.08
LIMA1-201ENST00000341247 ZNF841Q6ZN19 808 aa8.31□□□□□ -1.08
LIMA1-201ENST00000341247 PFDN5Q99471 154 aa8.31□□□□□ -1.08
LIMA1-201ENST00000341247 FAM103A1Q9BTL3 118 aaKnown RBP8.31□□□□□ -1.08
LIMA1-201ENST00000341247 CLEC7AQ9BXN2 247 aa8.31□□□□□ -1.08
LIMA1-201ENST00000341247 TMEM167BQ9NRX6 74 aa8.31□□□□□ -1.08
LIMA1-201ENST00000341247 S4R3C0 116 aa8.31□□□□□ -1.08
LIMA1-201ENST00000341247 C22orf46C9J442 243 aa8.3□□□□□ -1.08
LIMA1-201ENST00000341247 CA1P00915 261 aaPredicted RBP8.3□□□□□ -1.08
LIMA1-201ENST00000341247 LINC00311Q8N616 119 aa8.3□□□□□ -1.08
LIMA1-201ENST00000341247 SLC25A2Q9BXI2 301 aa8.3□□□□□ -1.08
LIMA1-201ENST00000341247 TOX4O94842 621 aa8.3□□□□□ -1.08
LIMA1-201ENST00000341247 AMBPP02760 352 aa8.3□□□□□ -1.08
LIMA1-201ENST00000341247 MC5RP33032 325 aa8.3□□□□□ -1.08
LIMA1-201ENST00000341247 PRRX1P54821 245 aa8.3□□□□□ -1.08
LIMA1-201ENST00000341247 RANP62826 216 aaKnown RBP8.3□□□□□ -1.08
LIMA1-201ENST00000341247 MRGPRG-AS1Q2M3A8 158 aa8.3□□□□□ -1.08
LIMA1-201ENST00000341247 ACTL10Q5JWF8 245 aa8.3□□□□□ -1.08
LIMA1-201ENST00000341247 PATE2Q6UY27 113 aa8.3□□□□□ -1.08
LIMA1-201ENST00000341247 TMEM183AQ8IXX5 376 aa8.3□□□□□ -1.08
LIMA1-201ENST00000341247 NBPF19A0A087WUL8 3843 aa8.3□□□□□ -1.08
LIMA1-201ENST00000341247 BUB1B-PAK6H3BSN5 160 aa8.3□□□□□ -1.08
LIMA1-201ENST00000341247 GNG5P63218 68 aa8.3□□□□□ -1.08
LIMA1-201ENST00000341247 LDLRAD2Q5SZI1 272 aa8.3□□□□□ -1.08
LIMA1-201ENST00000341247 OR8I2Q8N0Y5 310 aa8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 63.9 ms