RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 NEU4Q8WWR8 484 aaPredicted RBP8.62□□□□□ -1.03
CCDC88A-202ENST00000336838 Q9H3A6 140 aa8.62□□□□□ -1.03
CCDC88A-202ENST00000336838 EFNB3Q15768 340 aa8.62□□□□□ -1.03
CCDC88A-202ENST00000336838 GPX1P07203 203 aa8.62□□□□□ -1.03
CCDC88A-202ENST00000336838 FAM169BQ8N8A8 192 aa8.62□□□□□ -1.03
CCDC88A-202ENST00000336838 MDKP21741 143 aaPredicted RBP8.62□□□□□ -1.03
CCDC88A-202ENST00000336838 TNCP24821 2201 aa8.61□□□□□ -1.03
CCDC88A-202ENST00000336838 DPM3Q9P2X0 92 aa8.61□□□□□ -1.03
CCDC88A-202ENST00000336838 LOC105371242A0A075B767 164 aa8.61□□□□□ -1.03
CCDC88A-202ENST00000336838 PRR32B1ATL7 298 aa8.61□□□□□ -1.03
CCDC88A-202ENST00000336838 CECR9P0C854 216 aa8.61□□□□□ -1.03
CCDC88A-202ENST00000336838 CT83Q5H943 113 aa8.61□□□□□ -1.03
CCDC88A-202ENST00000336838 ARFGEF3Q5TH69 2177 aa8.61□□□□□ -1.03
CCDC88A-202ENST00000336838 A0A0A6YYD4 124 aa8.61□□□□□ -1.03
CCDC88A-202ENST00000336838 PGPEP1LA6NFU8 196 aa8.61□□□□□ -1.03
CCDC88A-202ENST00000336838 UBE2L6O14933 153 aa8.61□□□□□ -1.03
CCDC88A-202ENST00000336838 APOHP02749 345 aaPredicted RBP8.61□□□□□ -1.03
CCDC88A-202ENST00000336838 IGFBP2P18065 325 aa8.61□□□□□ -1.03
CCDC88A-202ENST00000336838 TANC2Q9HCD6 1990 aa8.61□□□□□ -1.03
CCDC88A-202ENST00000336838 IGKV1D-43A0A0B4J1Z2 117 aa8.61□□□□□ -1.03
CCDC88A-202ENST00000336838 MOSP00540 346 aa8.61□□□□□ -1.03
CCDC88A-202ENST00000336838 DMRTA1Q5VZB9 504 aa8.61□□□□□ -1.03
CCDC88A-202ENST00000336838 VKORC1L1Q8N0U8 176 aa8.61□□□□□ -1.03
CCDC88A-202ENST00000336838 SAA2-SAA4A0A096LPE2 208 aa8.61□□□□□ -1.03
CCDC88A-202ENST00000336838 SAA2P0DJI9 122 aaPredicted RBP8.61□□□□□ -1.03
CCDC88A-202ENST00000336838 ERVK11-1P61568 191 aa8.61□□□□□ -1.03
CCDC88A-202ENST00000336838 ADIPOQQ15848 244 aa8.61□□□□□ -1.03
CCDC88A-202ENST00000336838 RPL39P5Q59GN2 51 aa8.61□□□□□ -1.03
CCDC88A-202ENST00000336838 FAM231BA6NCW3 169 aa8.61□□□□□ -1.03
CCDC88A-202ENST00000336838 FAM159AQ6UWV7 190 aa8.61□□□□□ -1.03
CCDC88A-202ENST00000336838 GEMIN7Q9H840 131 aaKnown RBP8.61□□□□□ -1.03
CCDC88A-202ENST00000336838 RRHO14718 337 aa8.6□□□□□ -1.03
CCDC88A-202ENST00000336838 MMP23AO75900 390 aa8.6□□□□□ -1.03
CCDC88A-202ENST00000336838 ZNF124Q15973 351 aa8.6□□□□□ -1.03
CCDC88A-202ENST00000336838 FOXL2NBQ6ZUU3 175 aa8.6□□□□□ -1.03
CCDC88A-202ENST00000336838 C17orf82Q86X59 251 aaPredicted RBP8.6□□□□□ -1.03
CCDC88A-202ENST00000336838 TPRX1Q8N7U7 411 aa8.6□□□□□ -1.03
CCDC88A-202ENST00000336838 FER1L6-AS1Q8NA97 138 aa8.6□□□□□ -1.03
CCDC88A-202ENST00000336838 EPDR1Q9UM22 224 aa8.6□□□□□ -1.03
CCDC88A-202ENST00000336838 ATG2AQ2TAZ0 1938 aa8.6□□□□□ -1.03
CCDC88A-202ENST00000336838 A0A1W2PPE3 182 aa8.6□□□□□ -1.03
CCDC88A-202ENST00000336838 ETV2O00321 342 aaPredicted RBP8.6□□□□□ -1.03
CCDC88A-202ENST00000336838 AMBPP02760 352 aa8.6□□□□□ -1.03
CCDC88A-202ENST00000336838 NUTF2P61970 127 aaKnown RBP8.6□□□□□ -1.03
CCDC88A-202ENST00000336838 RAX2Q96IS3 184 aa8.6□□□□□ -1.03
CCDC88A-202ENST00000336838 TRGV9Q99603 122 aa8.6□□□□□ -1.03
CCDC88A-202ENST00000336838 UNQ5815/PRO19632Q6UWF5 114 aa8.6□□□□□ -1.03
CCDC88A-202ENST00000336838 LINC01551Q86U37 167 aa8.6□□□□□ -1.03
CCDC88A-202ENST00000336838 LYZL4Q96KX0 146 aa8.6□□□□□ -1.03
CCDC88A-202ENST00000336838 NCOR1P1Q9H4R4 102 aa8.6□□□□□ -1.03
CCDC88A-202ENST00000336838 C21orf62Q9NYP8 219 aa8.6□□□□□ -1.03
CCDC88A-202ENST00000336838 DYSFO75923 2080 aa8.6□□□□□ -1.03
CCDC88A-202ENST00000336838 TMSB15BA0A087X1C1 80 aa8.6□□□□□ -1.03
CCDC88A-202ENST00000336838 GFRA1P56159 465 aa8.6□□□□□ -1.03
CCDC88A-202ENST00000336838 PRR19A6NJB7 356 aa8.6□□□□□ -1.03
CCDC88A-202ENST00000336838 SPRED2Q7Z698 418 aa8.6□□□□□ -1.03
CCDC88A-202ENST00000336838 NABP1Q96AH0 204 aa8.6□□□□□ -1.03
CCDC88A-202ENST00000336838 C7orf71A4D174 169 aa8.6□□□□□ -1.03
CCDC88A-202ENST00000336838 FAM181BA6NEQ2 426 aa8.6□□□□□ -1.03
CCDC88A-202ENST00000336838 UQCRFS1P47985 274 aa8.6□□□□□ -1.03
CCDC88A-202ENST00000336838 WDR82Q6UXN9 313 aa8.6□□□□□ -1.03
CCDC88A-202ENST00000336838 ZIC4Q8N9L1 334 aa8.6□□□□□ -1.03
CCDC88A-202ENST00000336838 C8orf46Q8TAG6 207 aa8.6□□□□□ -1.03
CCDC88A-202ENST00000336838 SLC17A3O00476 420 aa8.6□□□□□ -1.03
CCDC88A-202ENST00000336838 SRSF3P84103 164 aaKnown RBP8.6□□□□□ -1.03
CCDC88A-202ENST00000336838 CD69Q07108 199 aa8.6□□□□□ -1.03
CCDC88A-202ENST00000336838 KIAA1549Q9HCM3 1950 aa8.59□□□□□ -1.03
CCDC88A-202ENST00000336838 TMEM50AO95807 157 aa8.59□□□□□ -1.03
CCDC88A-202ENST00000336838 FTH1P19P0C7X4 201 aa8.59□□□□□ -1.03
CCDC88A-202ENST00000336838 ADMP35318 185 aa8.59□□□□□ -1.03
CCDC88A-202ENST00000336838 SRSF1Q07955 248 aaKnown RBP eCLIP8.59□□□□□ -1.03
CCDC88A-202ENST00000336838 OR13A1Q8NGR1 328 aa8.59□□□□□ -1.03
CCDC88A-202ENST00000336838 PNRC2Q9NPJ4 139 aaKnown RBP8.59□□□□□ -1.03
CCDC88A-202ENST00000336838 DPM2O94777 84 aa8.59□□□□□ -1.03
CCDC88A-202ENST00000336838 PLNP26678 52 aa8.59□□□□□ -1.03
CCDC88A-202ENST00000336838 PSG7Q13046 419 aa8.59□□□□□ -1.03
CCDC88A-202ENST00000336838 ARPC1AQ92747 370 aa8.59□□□□□ -1.03
CCDC88A-202ENST00000336838 OOSP1A8MZH6 123 aa8.59□□□□□ -1.03
CCDC88A-202ENST00000336838 CCL21O00585 134 aa8.59□□□□□ -1.03
CCDC88A-202ENST00000336838 RAMP3O60896 148 aa8.59□□□□□ -1.03
CCDC88A-202ENST00000336838 PDE6HQ13956 83 aa8.59□□□□□ -1.03
CCDC88A-202ENST00000336838 SPCS1Q9Y6A9 102 aa8.59□□□□□ -1.03
CCDC88A-202ENST00000336838 TGIF1Q15583 401 aa8.59□□□□□ -1.03
CCDC88A-202ENST00000336838 SLC25A39Q9BZJ4 359 aaPredicted RBP8.59□□□□□ -1.03
CCDC88A-202ENST00000336838 YAE1D1Q9NRH1 226 aa8.59□□□□□ -1.03
CCDC88A-202ENST00000336838 FBLN7Q53RD9 439 aa8.59□□□□□ -1.04
CCDC88A-202ENST00000336838 IGKV1D-13A0A0B4J2D9 117 aa8.58□□□□□ -1.04
CCDC88A-202ENST00000336838 IGKV1-13P0DP09 117 aa8.58□□□□□ -1.04
CCDC88A-202ENST00000336838 RRN3P1Q2M238 152 aa8.58□□□□□ -1.04
CCDC88A-202ENST00000336838 MOB4Q9Y3A3 225 aa8.58□□□□□ -1.04
CCDC88A-202ENST00000336838 MYOD1P15172 320 aa8.58□□□□□ -1.04
CCDC88A-202ENST00000336838 SRRM5B3KS81 715 aa8.58□□□□□ -1.04
CCDC88A-202ENST00000336838 WFDC1Q9HC57 220 aa8.58□□□□□ -1.04
CCDC88A-202ENST00000336838 FABP5P3A8MUU1 101 aa8.58□□□□□ -1.04
CCDC88A-202ENST00000336838 MST1P26927 711 aa8.58□□□□□ -1.04
CCDC88A-202ENST00000336838 ATP5G3P48201 142 aa8.58□□□□□ -1.04
CCDC88A-202ENST00000336838 BOD1L2Q8IYS8 172 aa8.58□□□□□ -1.04
CCDC88A-202ENST00000336838 NBR2O15453 112 aa8.58□□□□□ -1.04
CCDC88A-202ENST00000336838 SAA1P0DJI8 122 aaPredicted RBP8.58□□□□□ -1.04
CCDC88A-202ENST00000336838 RHOGP84095 191 aa8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms