RNA–Protein interactions for RNA: ENST00000249837.7

VPS13C-201, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VPS13C, Length 13,300 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-201ENST00000249837 ZNRD1Q9P1U0 126 aa3.82□□□□□ -1.8
VPS13C-201ENST00000249837 HILPDAQ9Y5L2 63 aa3.82□□□□□ -1.8
VPS13C-201ENST00000249837 CHD8Q9HCK8 2581 aa3.82□□□□□ -1.8
VPS13C-201ENST00000249837 TRBV9A0A0B4J1U6 114 aa3.82□□□□□ -1.8
VPS13C-201ENST00000249837 CCL3L1P16619 93 aa3.82□□□□□ -1.8
VPS13C-201ENST00000249837 TEX38Q6PEX7 206 aa3.82□□□□□ -1.8
VPS13C-201ENST00000249837 ELOVL5Q9NYP7 299 aa3.82□□□□□ -1.8
VPS13C-201ENST00000249837 COMPP49747 757 aaPredicted RBP3.82□□□□□ -1.8
VPS13C-201ENST00000249837 EFNB3Q15768 340 aa3.82□□□□□ -1.8
VPS13C-201ENST00000249837 SRSF7Q16629 238 aaKnown RBP eCLIP3.82□□□□□ -1.8
VPS13C-201ENST00000249837 TBR1Q16650 682 aa3.82□□□□□ -1.8
VPS13C-201ENST00000249837 LINC00473A8K010 186 aa3.82□□□□□ -1.8
VPS13C-201ENST00000249837 IGKV1D-33P01593 117 aa3.82□□□□□ -1.8
VPS13C-201ENST00000249837 IGKV1-33P01594 117 aa3.82□□□□□ -1.8
VPS13C-201ENST00000249837 SRSF6Q13247 344 aaKnown RBP3.82□□□□□ -1.8
VPS13C-201ENST00000249837 LEPROTL1O95214 131 aa3.82□□□□□ -1.8
VPS13C-201ENST00000249837 IGLV3-1P01715 115 aa3.82□□□□□ -1.8
VPS13C-201ENST00000249837 RNFT1Q5M7Z0 435 aa3.82□□□□□ -1.8
VPS13C-201ENST00000249837 OR4C13Q8NGP0 309 aa3.82□□□□□ -1.8
VPS13C-201ENST00000249837 AGMATQ9BSE5 352 aa3.82□□□□□ -1.8
VPS13C-201ENST00000249837 GP6Q9HCN6 339 aa3.82□□□□□ -1.8
VPS13C-201ENST00000249837 ZNF503-AS2A6NEH8 195 aa3.82□□□□□ -1.8
VPS13C-201ENST00000249837 PLA2G5P39877 138 aa3.82□□□□□ -1.8
VPS13C-201ENST00000249837 RAB1CQ92928 201 aa3.82□□□□□ -1.8
VPS13C-201ENST00000249837 LINC00479Q96M42 142 aa3.82□□□□□ -1.8
VPS13C-201ENST00000249837 GUCD1Q96NT3 240 aa3.82□□□□□ -1.8
VPS13C-201ENST00000249837 LPAR2Q9HBW0 351 aa3.82□□□□□ -1.8
VPS13C-201ENST00000249837 ZNF726P1Q15940 193 aa3.82□□□□□ -1.8
VPS13C-201ENST00000249837 SLC25A34Q6PIV7 304 aa3.82□□□□□ -1.8
VPS13C-201ENST00000249837 LINC00305Q7Z4B0 112 aa3.82□□□□□ -1.8
VPS13C-201ENST00000249837 TMEM116Q8NCL8 245 aa3.82□□□□□ -1.8
VPS13C-201ENST00000249837 RNF115Q9Y4L5 304 aa3.82□□□□□ -1.8
VPS13C-201ENST00000249837 KBTBD11-OT1A0A1B0GTJ5 212 aa3.82□□□□□ -1.8
VPS13C-201ENST00000249837 FAM27E3Q08E93 113 aa3.82□□□□□ -1.8
VPS13C-201ENST00000249837 C19orf35Q6ZS72 473 aa3.82□□□□□ -1.8
VPS13C-201ENST00000249837 MRPL37Q9BZE1 423 aaKnown RBP3.82□□□□□ -1.8
VPS13C-201ENST00000249837 FBLL1A6NHQ2 334 aaKnown RBP3.81□□□□□ -1.8
VPS13C-201ENST00000249837 LYNX1G3V0Z9 82 aa3.81□□□□□ -1.8
VPS13C-201ENST00000249837 LYNX1P0DP58 116 aa3.81□□□□□ -1.8
VPS13C-201ENST00000249837 TWIST1Q15672 202 aa3.81□□□□□ -1.8
VPS13C-201ENST00000249837 C1orf194Q5T5A4 169 aa3.81□□□□□ -1.8
VPS13C-201ENST00000249837 RAB1BQ9H0U4 201 aa3.81□□□□□ -1.8
VPS13C-201ENST00000249837 TREML4Q6UXN2 200 aa3.81□□□□□ -1.8
VPS13C-201ENST00000249837 KIR3DL3Q8N743 410 aa3.81□□□□□ -1.8
VPS13C-201ENST00000249837 MUC22E2RYF6 1773 aaPredicted RBP3.81□□□□□ -1.8
VPS13C-201ENST00000249837 C15orf61A6NNL5 157 aa3.81□□□□□ -1.8
VPS13C-201ENST00000249837 CORTO00230 105 aa3.81□□□□□ -1.8
VPS13C-201ENST00000249837 NBEAP1P0C6P0 100 aa3.81□□□□□ -1.8
VPS13C-201ENST00000249837 CDKN1AP38936 164 aa3.81□□□□□ -1.8
VPS13C-201ENST00000249837 ACTL10Q5JWF8 245 aa3.81□□□□□ -1.8
VPS13C-201ENST00000249837 C10orf55Q5SWW7 151 aa3.81□□□□□ -1.8
VPS13C-201ENST00000249837 PNKDQ8N490 385 aa3.81□□□□□ -1.8
VPS13C-201ENST00000249837 TMEM242Q9NWH2 141 aa3.81□□□□□ -1.8
VPS13C-201ENST00000249837 PRRC2CQ9Y520 2896 aaKnown RBP3.81□□□□□ -1.8
VPS13C-201ENST00000249837 TMEM189A5PLL7 270 aa3.81□□□□□ -1.8
VPS13C-201ENST00000249837 IZUMO1RA6ND01 250 aa3.81□□□□□ -1.8
VPS13C-201ENST00000249837 M0QZ24 198 aa3.81□□□□□ -1.8
VPS13C-201ENST00000249837 IGHV2-70P01814 119 aa3.81□□□□□ -1.8
VPS13C-201ENST00000249837 PMCHL1Q16048 86 aa3.81□□□□□ -1.8
VPS13C-201ENST00000249837 STAG3L2P0CL84 134 aa3.81□□□□□ -1.8
VPS13C-201ENST00000249837 STAG3L3P0CL85 134 aa3.81□□□□□ -1.8
VPS13C-201ENST00000249837 MLANAQ16655 118 aa3.81□□□□□ -1.8
VPS13C-201ENST00000249837 TMEM144Q7Z5S9 345 aa3.81□□□□□ -1.8
VPS13C-201ENST00000249837 ZNF114Q8NC26 417 aa3.81□□□□□ -1.8
VPS13C-201ENST00000249837 IGHV1-18A0A0C4DH31 117 aa3.81□□□□□ -1.8
VPS13C-201ENST00000249837 CGB1A6NKQ9 187 aa3.81□□□□□ -1.8
VPS13C-201ENST00000249837 MC5RP33032 325 aa3.81□□□□□ -1.8
VPS13C-201ENST00000249837 YPEL1O60688 119 aa3.81□□□□□ -1.8
VPS13C-201ENST00000249837 PRSS8Q16651 343 aa3.81□□□□□ -1.8
VPS13C-201ENST00000249837 YPEL2Q96QA6 119 aa3.81□□□□□ -1.8
VPS13C-201ENST00000249837 FGF23Q9GZV9 251 aaPredicted RBP3.81□□□□□ -1.8
VPS13C-201ENST00000249837 FBXL7Q9UJT9 491 aa3.81□□□□□ -1.8
VPS13C-201ENST00000249837 LAMTOR2Q9Y2Q5 125 aa3.81□□□□□ -1.8
VPS13C-201ENST00000249837 MLNRO43193 412 aa3.81□□□□□ -1.8
VPS13C-201ENST00000249837 RBFOX2O43251 390 aaKnown RBP eCLIP3.81□□□□□ -1.8
VPS13C-201ENST00000249837 CD24P25063 80 aa3.81□□□□□ -1.8
VPS13C-201ENST00000249837 COTL1Q14019 142 aa3.81□□□□□ -1.8
VPS13C-201ENST00000249837 GTF2H5Q6ZYL4 71 aa3.81□□□□□ -1.8
VPS13C-201ENST00000249837 SNRNP40Q96DI7 357 aaKnown RBP3.81□□□□□ -1.8
VPS13C-201ENST00000249837 C2orf88Q9BSF0 95 aa3.81□□□□□ -1.8
VPS13C-201ENST00000249837 OSTCQ9NRP0 149 aa3.81□□□□□ -1.8
VPS13C-201ENST00000249837 KLF2Q9Y5W3 355 aaPredicted RBP3.81□□□□□ -1.8
VPS13C-201ENST00000249837 ZNF207O43670 478 aaKnown RBP3.81□□□□□ -1.8
VPS13C-201ENST00000249837 PRCDQ00LT1 54 aa3.81□□□□□ -1.8
VPS13C-201ENST00000249837 ASPHD1Q5U4P2 390 aa3.81□□□□□ -1.8
VPS13C-201ENST00000249837 TNFSF13O75888 250 aa3.81□□□□□ -1.8
VPS13C-201ENST00000249837 TMEM97Q5BJF2 176 aa3.81□□□□□ -1.8
VPS13C-201ENST00000249837 SEPSECSQ9HD40 501 aaKnown RBP3.81□□□□□ -1.8
VPS13C-201ENST00000249837 F5H697 171 aa3.81□□□□□ -1.8
VPS13C-201ENST00000249837 LYPD6BQ8NI32 183 aa3.81□□□□□ -1.8
VPS13C-201ENST00000249837 ASCL2Q99929 193 aa3.81□□□□□ -1.8
VPS13C-201ENST00000249837 EPDR1Q9UM22 224 aa3.81□□□□□ -1.8
VPS13C-201ENST00000249837 TRAV9-1A0A075B6T8 112 aa3.8□□□□□ -1.8
VPS13C-201ENST00000249837 IGHV3-23P01764 117 aa3.8□□□□□ -1.8
VPS13C-201ENST00000249837 ECSCRQ19T08 205 aa3.8□□□□□ -1.8
VPS13C-201ENST00000249837 C18orf15Q96N68 181 aa3.8□□□□□ -1.8
VPS13C-201ENST00000249837 UNQ6494/PRO21346Q6UXR6 183 aa3.8□□□□□ -1.8
VPS13C-201ENST00000249837 MRPL32Q9BYC8 188 aaKnown RBP3.8□□□□□ -1.8
VPS13C-201ENST00000249837 CDC42EP3Q9UKI2 254 aa3.8□□□□□ -1.8
VPS13C-201ENST00000249837 SELENOKQ9Y6D0 94 aa3.8□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms