RNA–Protein interactions for RNA: ENST00000638016.1

PNKP-230, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 109 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-230ENST00000638016 Q6ZRM9 215 aa13.25□□□□□ -0.29
PNKP-230ENST00000638016 ZNF114Q8NC26 417 aa13.25□□□□□ -0.29
PNKP-230ENST00000638016 ZFAND1Q8TCF1 268 aa13.25□□□□□ -0.29
PNKP-230ENST00000638016 MRPL27Q9P0M9 148 aaKnown RBP13.25□□□□□ -0.29
PNKP-230ENST00000638016 NDUFA4O00483 81 aa13.24□□□□□ -0.29
PNKP-230ENST00000638016 CTDSPLO15194 276 aa13.24□□□□□ -0.29
PNKP-230ENST00000638016 ETV6P41212 452 aa13.24□□□□□ -0.29
PNKP-230ENST00000638016 ELLP55199 621 aaPredicted RBP13.24□□□□□ -0.29
PNKP-230ENST00000638016 MRPS10P82664 201 aaKnown RBP13.24□□□□□ -0.29
PNKP-230ENST00000638016 SPSB3Q6PJ21 355 aa13.24□□□□□ -0.29
PNKP-230ENST00000638016 CCDC71LQ8N9Z2 235 aa13.24□□□□□ -0.29
PNKP-230ENST00000638016 OR51S1Q8NGJ8 323 aa13.24□□□□□ -0.29
PNKP-230ENST00000638016 OR1L6Q8NGR2 347 aa13.24□□□□□ -0.29
PNKP-230ENST00000638016 MARC2Q969Z3 335 aa13.24□□□□□ -0.29
PNKP-230ENST00000638016 BCL7BQ9BQE9 202 aa13.24□□□□□ -0.29
PNKP-230ENST00000638016 DAZ1Q9NQZ3 744 aaKnown RBP13.24□□□□□ -0.29
PNKP-230ENST00000638016 UBQLN2Q9UHD9 624 aa13.24□□□□□ -0.29
PNKP-230ENST00000638016 TENM2Q9NT68 2774 aa13.23□□□□□ -0.29
PNKP-230ENST00000638016 IFNA17P01571 189 aa13.23□□□□□ -0.29
PNKP-230ENST00000638016 AKAIN1P0CW23 69 aa13.23□□□□□ -0.29
PNKP-230ENST00000638016 TNFSF8P32971 234 aa13.23□□□□□ -0.29
PNKP-230ENST00000638016 SSBP1Q04837 148 aaKnown RBP13.23□□□□□ -0.29
PNKP-230ENST00000638016 MEF2DQ14814 521 aa13.23□□□□□ -0.29
PNKP-230ENST00000638016 RBPMS2Q6ZRY4 209 aaKnown RBP13.23□□□□□ -0.29
PNKP-230ENST00000638016 SLC16A13Q7RTY0 426 aa13.23□□□□□ -0.29
PNKP-230ENST00000638016 SLC35G3Q8N808 338 aa13.23□□□□□ -0.29
PNKP-230ENST00000638016 GLYATL2Q8WU03 294 aa13.23□□□□□ -0.29
PNKP-230ENST00000638016 NAA60Q9H7X0 242 aa13.23□□□□□ -0.29
PNKP-230ENST00000638016 MRPL36Q9P0J6 103 aaKnown RBP13.23□□□□□ -0.29
PNKP-230ENST00000638016 CSMD3Q7Z407 3707 aa13.23□□□□□ -0.29
PNKP-230ENST00000638016 IGHV3OR16-13A0A075B7E8 117 aa13.22□□□□□ -0.29
PNKP-230ENST00000638016 IGHV3-74A0A0B4J1X5 117 aa13.22□□□□□ -0.29
PNKP-230ENST00000638016 ANKRD20A5PA0PJZ0 165 aa13.22□□□□□ -0.29
PNKP-230ENST00000638016 DISC1C4P0D8 188 aa13.22□□□□□ -0.29
PNKP-230ENST00000638016 NOL3O60936 208 aaKnown RBP13.22□□□□□ -0.29
PNKP-230ENST00000638016 RNASE2P10153 161 aaKnown RBP13.22□□□□□ -0.29
PNKP-230ENST00000638016 LYL1P12980 280 aa13.22□□□□□ -0.29
PNKP-230ENST00000638016 MFAP4P55083 255 aa13.22□□□□□ -0.29
PNKP-230ENST00000638016 ERHP84090 104 aaKnown RBP13.22□□□□□ -0.29
PNKP-230ENST00000638016 RNASE11Q8TAA1 199 aaKnown RBP13.22□□□□□ -0.29
PNKP-230ENST00000638016 TMEM230Q96A57 120 aa13.22□□□□□ -0.29
PNKP-230ENST00000638016 SOSTQ9BQB4 213 aa13.22□□□□□ -0.29
PNKP-230ENST00000638016 TMEM222Q9H0R3 208 aa13.22□□□□□ -0.29
PNKP-230ENST00000638016 GPR132Q9UNW8 380 aa13.22□□□□□ -0.29
PNKP-230ENST00000638016 C14orf166Q9Y224 244 aaKnown RBP13.22□□□□□ -0.29
PNKP-230ENST00000638016 TEX13DA0A0J9YY54 714 aaPredicted RBP13.21□□□□□ -0.29
PNKP-230ENST00000638016 GSTZ1O43708 216 aaPredicted RBP13.21□□□□□ -0.29
PNKP-230ENST00000638016 YIF1AO95070 293 aa13.21□□□□□ -0.29
PNKP-230ENST00000638016 NXPH3O95157 252 aa13.21□□□□□ -0.29
PNKP-230ENST00000638016 HOXA1P49639 335 aaPredicted RBP13.21□□□□□ -0.29
PNKP-230ENST00000638016 MLANAQ16655 118 aa13.21□□□□□ -0.29
PNKP-230ENST00000638016 SELENOHQ8IZQ5 122 aaKnown RBP13.21□□□□□ -0.29
PNKP-230ENST00000638016 MCFD2Q8NI22 146 aa13.21□□□□□ -0.29
PNKP-230ENST00000638016 ATP6V0BQ99437 205 aa13.21□□□□□ -0.29
PNKP-230ENST00000638016 TRAV25A0A0B4J276 109 aa13.2□□□□□ -0.3
PNKP-230ENST00000638016 CRYM-AS1A6NIL9 109 aa13.2□□□□□ -0.3
PNKP-230ENST00000638016 NUPL2O15504 423 aaKnown RBP13.2□□□□□ -0.3
PNKP-230ENST00000638016 CDS2O95674 445 aa13.2□□□□□ -0.3
PNKP-230ENST00000638016 ODF3L2Q3SX64 289 aa13.2□□□□□ -0.3
PNKP-230ENST00000638016 GPR146Q96CH1 333 aa13.2□□□□□ -0.3
PNKP-230ENST00000638016 RRNAD1Q96FB5 475 aaKnown RBP13.2□□□□□ -0.3
PNKP-230ENST00000638016 RNF2Q99496 336 aa13.2□□□□□ -0.3
PNKP-230ENST00000638016 NXF2Q9GZY0 626 aaKnown RBP13.2□□□□□ -0.3
PNKP-230ENST00000638016 FNDC4Q9H6D8 234 aaPredicted RBP13.2□□□□□ -0.3
PNKP-230ENST00000638016 FABP12A6NFH5 140 aa13.19□□□□□ -0.3
PNKP-230ENST00000638016 C15orf62A8K5M9 175 aa13.19□□□□□ -0.3
PNKP-230ENST00000638016 TSPAN4O14817 238 aa13.19□□□□□ -0.3
PNKP-230ENST00000638016 GNG7O60262 68 aa13.19□□□□□ -0.3
PNKP-230ENST00000638016 FCGR2BP31994 310 aaPredicted RBP13.19□□□□□ -0.3
PNKP-230ENST00000638016 TMEM268Q5VZI3 342 aa13.19□□□□□ -0.3
PNKP-230ENST00000638016 PVRIGQ6DKI7 326 aa13.19□□□□□ -0.3
PNKP-230ENST00000638016 SPAG8Q99932 426 aaPredicted RBP13.19□□□□□ -0.3
PNKP-230ENST00000638016 PDCD10Q9BUL8 212 aa13.19□□□□□ -0.3
PNKP-230ENST00000638016 CACNG5Q9UF02 275 aa13.19□□□□□ -0.3
PNKP-230ENST00000638016 SMPXQ9UHP9 88 aa13.19□□□□□ -0.3
PNKP-230ENST00000638016 IGKV3-7A0A075B6H7 116 aa13.18□□□□□ -0.3
PNKP-230ENST00000638016 IGHV7-4-1A0A0J9YVY3 117 aa13.18□□□□□ -0.3
PNKP-230ENST00000638016 INS-IGF2F8WCM5 200 aa13.18□□□□□ -0.3
PNKP-230ENST00000638016 K7EMT4 169 aa13.18□□□□□ -0.3
PNKP-230ENST00000638016 CHEK1O14757 476 aa13.18□□□□□ -0.3
PNKP-230ENST00000638016 ATG12O94817 140 aa13.18□□□□□ -0.3
PNKP-230ENST00000638016 SNCAP37840 140 aa13.18□□□□□ -0.3
PNKP-230ENST00000638016 RELQ04864 619 aaPredicted RBP13.18□□□□□ -0.3
PNKP-230ENST00000638016 SURF2Q15527 256 aaPredicted RBP13.18□□□□□ -0.3
PNKP-230ENST00000638016 RBPMSQ93062 196 aaKnown RBP13.18□□□□□ -0.3
PNKP-230ENST00000638016 OR10C1Q96KK4 312 aa13.18□□□□□ -0.3
PNKP-230ENST00000638016 TXN2Q99757 166 aa13.18□□□□□ -0.3
PNKP-230ENST00000638016 PRRT1Q99946 306 aa13.18□□□□□ -0.3
PNKP-230ENST00000638016 RHPN1-AS1Q9BWJ2 59 aa13.18□□□□□ -0.3
PNKP-230ENST00000638016 MCUBQ9NWR8 336 aa13.18□□□□□ -0.3
PNKP-230ENST00000638016 IGHV3-66A0A0C4DH42 116 aa13.17□□□□□ -0.3
PNKP-230ENST00000638016 CCDC160A6NGH7 325 aa13.17□□□□□ -0.3
PNKP-230ENST00000638016 APOHP02749 345 aaPredicted RBP13.17□□□□□ -0.3
PNKP-230ENST00000638016 TFPI2P48307 235 aa13.17□□□□□ -0.3
PNKP-230ENST00000638016 ZNF124Q15973 351 aa13.17□□□□□ -0.3
PNKP-230ENST00000638016 ANKRD55Q3KP44 614 aa13.17□□□□□ -0.3
PNKP-230ENST00000638016 TOMM20LQ6UXN7 152 aa13.17□□□□□ -0.3
PNKP-230ENST00000638016 TRIM63Q969Q1 353 aa13.17□□□□□ -0.3
PNKP-230ENST00000638016 GGTLC1Q9BX51 225 aa13.17□□□□□ -0.3
PNKP-230ENST00000638016 RSL24D1Q9UHA3 163 aaKnown RBP13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 129.8 ms