RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 SUB1P53999 127 aaKnown RBP eCLIP14.22□□□□□ -0.131e-9■■■■□ 24.9
CCDC28A-203ENST00000617445 MEF2DQ14814 521 aa14.22□□□□□ -0.13
CCDC28A-203ENST00000617445 SPCS2Q15005 226 aa14.22□□□□□ -0.13
CCDC28A-203ENST00000617445 STEAP1BQ6NZ63 245 aa14.22□□□□□ -0.13
CCDC28A-203ENST00000617445 OR10C1Q96KK4 312 aa14.22□□□□□ -0.13
CCDC28A-203ENST00000617445 PDCD10Q9BUL8 212 aa14.22□□□□□ -0.13
CCDC28A-203ENST00000617445 NXF2Q9GZY0 626 aaKnown RBP14.22□□□□□ -0.13
CCDC28A-203ENST00000617445 SMPXQ9UHP9 88 aa14.22□□□□□ -0.13
CCDC28A-203ENST00000617445 CORTO00230 105 aa14.21□□□□□ -0.13
CCDC28A-203ENST00000617445 GNG7O60262 68 aa14.21□□□□□ -0.13
CCDC28A-203ENST00000617445 CD5P06127 495 aa14.21□□□□□ -0.13
CCDC28A-203ENST00000617445 CTSDP07339 412 aaPredicted RBP14.21□□□□□ -0.13
CCDC28A-203ENST00000617445 NPBWR1P48145 328 aa14.21□□□□□ -0.13
CCDC28A-203ENST00000617445 APOC4P55056 127 aa14.21□□□□□ -0.13
CCDC28A-203ENST00000617445 CMC4P56277 68 aaPredicted RBP14.21□□□□□ -0.13
CCDC28A-203ENST00000617445 TRIM16LQ309B1 348 aa14.21□□□□□ -0.13
CCDC28A-203ENST00000617445 SCGB2B2Q4G0G5 96 aa14.21□□□□□ -0.13
CCDC28A-203ENST00000617445 SLC35G3Q8N808 338 aa14.21□□□□□ -0.13
CCDC28A-203ENST00000617445 RRNAD1Q96FB5 475 aaKnown RBP14.21□□□□□ -0.13
CCDC28A-203ENST00000617445 MIXL1Q9H2W2 232 aa14.21□□□□□ -0.13
CCDC28A-203ENST00000617445 A0A0B4J293 547 aa14.2□□□□□ -0.14
CCDC28A-203ENST00000617445 IGHV7-4-1A0A0J9YVY3 117 aa14.2□□□□□ -0.14
CCDC28A-203ENST00000617445 UBE2CO00762 179 aa14.2□□□□□ -0.14
CCDC28A-203ENST00000617445 YIF1AO95070 293 aa14.2□□□□□ -0.14
CCDC28A-203ENST00000617445 IFNA17P01571 189 aa14.2□□□□□ -0.14
CCDC28A-203ENST00000617445 UCP1P25874 307 aa14.2□□□□□ -0.14
CCDC28A-203ENST00000617445 BMI1P35226 326 aa14.2□□□□□ -0.14
CCDC28A-203ENST00000617445 PPP5CP53041 499 aa14.2□□□□□ -0.14
CCDC28A-203ENST00000617445 SURF2Q15527 256 aaPredicted RBP14.2□□□□□ -0.14
CCDC28A-203ENST00000617445 Q6ZWC4 215 aa14.2□□□□□ -0.14
CCDC28A-203ENST00000617445 FAM219AQ8IW50 185 aa14.2□□□□□ -0.14
CCDC28A-203ENST00000617445 TMEM116Q8NCL8 245 aa14.2□□□□□ -0.14
CCDC28A-203ENST00000617445 DUSP18Q8NEJ0 188 aa14.2□□□□□ -0.14
CCDC28A-203ENST00000617445 OR4D10Q8NGI6 311 aa14.2□□□□□ -0.14
CCDC28A-203ENST00000617445 OR13C8Q8NGS7 320 aa14.2□□□□□ -0.14
CCDC28A-203ENST00000617445 PINX1Q96BK5 328 aaKnown RBP14.2□□□□□ -0.14
CCDC28A-203ENST00000617445 TP53TG1Q9Y2A0 90 aa14.2□□□□□ -0.14
CCDC28A-203ENST00000617445 DYNC2H1Q8NCM8 4307 aaKnown RBP14.19□□□□□ -0.14
CCDC28A-203ENST00000617445 TRAV14DV4A0A0A6YYC5 116 aa14.19□□□□□ -0.14
CCDC28A-203ENST00000617445 KIR2DL5BA0A0G2JN68 375 aa14.19□□□□□ -0.14
CCDC28A-203ENST00000617445 KIR2DL5BA0A0G2JPC4 375 aa14.19□□□□□ -0.14
CCDC28A-203ENST00000617445 CTDSP2O14595 271 aa14.19□□□□□ -0.14
CCDC28A-203ENST00000617445 CTDSPLO15194 276 aa14.19□□□□□ -0.14
CCDC28A-203ENST00000617445 ST8SIA3O43173 380 aa14.19□□□□□ -0.14
CCDC28A-203ENST00000617445 NOL3O60936 208 aaKnown RBP14.19□□□□□ -0.14
CCDC28A-203ENST00000617445 IZUMO4Q1ZYL8 232 aa14.19□□□□□ -0.14
CCDC28A-203ENST00000617445 PVRIGQ6DKI7 326 aa14.19□□□□□ -0.14
CCDC28A-203ENST00000617445 KIR2DL5AQ8N109 375 aa14.19□□□□□ -0.14
CCDC28A-203ENST00000617445 KIR2DL5BQ8NHK3 375 aa14.19□□□□□ -0.14
CCDC28A-203ENST00000617445 MARCH1Q8TCQ1 289 aa14.19□□□□□ -0.14
CCDC28A-203ENST00000617445 SMIM4Q8WVI0 70 aa14.19□□□□□ -0.14
CCDC28A-203ENST00000617445 OVOL2Q9BRP0 275 aa14.19□□□□□ -0.14
CCDC28A-203ENST00000617445 GINS3Q9BRX5 216 aa14.19□□□□□ -0.14
CCDC28A-203ENST00000617445 RHPN1-AS1Q9BWJ2 59 aa14.19□□□□□ -0.14
CCDC28A-203ENST00000617445 ENY2Q9NPA8 101 aa14.19□□□□□ -0.14
CCDC28A-203ENST00000617445 CCDC59Q9P031 241 aaKnown RBP14.19□□□□□ -0.14
CCDC28A-203ENST00000617445 C14orf166Q9Y224 244 aaKnown RBP14.19□□□□□ -0.14
CCDC28A-203ENST00000617445 IGHV3OR16-8A0A075B7F1 116 aa14.18□□□□□ -0.14
CCDC28A-203ENST00000617445 DISC1C4P0D8 188 aa14.18□□□□□ -0.14
CCDC28A-203ENST00000617445 CHEK1O14757 476 aa14.18□□□□□ -0.14
CCDC28A-203ENST00000617445 ZNF207O43670 478 aaKnown RBP14.18□□□□□ -0.14
CCDC28A-203ENST00000617445 WFDC3Q8IUB2 231 aa14.18□□□□□ -0.14
CCDC28A-203ENST00000617445 DYNC2LI1Q8TCX1 351 aa14.18□□□□□ -0.14
CCDC28A-203ENST00000617445 TMEM222Q9H0R3 208 aa14.18□□□□□ -0.14
CCDC28A-203ENST00000617445 CDS2O95674 445 aa14.17□□□□□ -0.14
CCDC28A-203ENST00000617445 DHODHQ02127 395 aa14.17□□□□□ -0.14
CCDC28A-203ENST00000617445 SP6Q3SY56 376 aa14.17□□□□□ -0.14
CCDC28A-203ENST00000617445 RNASE11Q8TAA1 199 aaKnown RBP14.17□□□□□ -0.14
CCDC28A-203ENST00000617445 GALNT14Q96FL9 552 aa14.17□□□□□ -0.14
CCDC28A-203ENST00000617445 DIRAS2Q96HU8 199 aa14.17□□□□□ -0.14
CCDC28A-203ENST00000617445 ZNF414Q96IQ9 312 aa14.17□□□□□ -0.14
CCDC28A-203ENST00000617445 RNF2Q99496 336 aa14.17□□□□□ -0.14
CCDC28A-203ENST00000617445 C6orf62Q9GZU0 229 aaPredicted RBP14.17□□□□□ -0.14
CCDC28A-203ENST00000617445 H3BMQ9 156 aa14.16□□□□□ -0.14
CCDC28A-203ENST00000617445 SCGB2A1O75556 95 aa14.16□□□□□ -0.14
CCDC28A-203ENST00000617445 AKAIN1P0CW23 69 aa14.16□□□□□ -0.14
CCDC28A-203ENST00000617445 ETV6P41212 452 aa14.16□□□□□ -0.14
CCDC28A-203ENST00000617445 HOXA1P49639 335 aaPredicted RBP14.16□□□□□ -0.14
CCDC28A-203ENST00000617445 ODF3L2Q3SX64 289 aa14.16□□□□□ -0.14
CCDC28A-203ENST00000617445 AARDQ4LEZ3 155 aa14.16□□□□□ -0.14
CCDC28A-203ENST00000617445 SPINK9Q5DT21 86 aa14.16□□□□□ -0.14
CCDC28A-203ENST00000617445 STPG3Q8N7X2 389 aa14.16□□□□□ -0.14
CCDC28A-203ENST00000617445 OR52E5Q8NH55 327 aa14.16□□□□□ -0.14
CCDC28A-203ENST00000617445 PRRT1Q99946 306 aa14.16□□□□□ -0.14
CCDC28A-203ENST00000617445 RTBDNQ9BSG5 229 aaPredicted RBP14.16□□□□□ -0.14
CCDC28A-203ENST00000617445 CTNNBIP1Q9NSA3 81 aaPredicted RBP14.16□□□□□ -0.14
CCDC28A-203ENST00000617445 CACFD1Q9UGQ2 172 aa14.16□□□□□ -0.14
CCDC28A-203ENST00000617445 UBQLN2Q9UHD9 624 aa14.16□□□□□ -0.14
CCDC28A-203ENST00000617445 TEX13DA0A0J9YY54 714 aaPredicted RBP14.15□□□□□ -0.14
CCDC28A-203ENST00000617445 TMEM50AO95807 157 aa14.15□□□□□ -0.14
CCDC28A-203ENST00000617445 IGHV3-48P01763 117 aa14.15□□□□□ -0.14
CCDC28A-203ENST00000617445 RNASE2P10153 161 aaKnown RBP14.15□□□□□ -0.14
CCDC28A-203ENST00000617445 SPCS3P61009 180 aa14.15□□□□□ -0.14
CCDC28A-203ENST00000617445 PAFAH1B2P68402 229 aa14.15□□□□□ -0.14
CCDC28A-203ENST00000617445 IL18Q14116 193 aa14.15□□□□□ -0.14
CCDC28A-203ENST00000617445 TOMM20LQ6UXN7 152 aa14.15□□□□□ -0.14
CCDC28A-203ENST00000617445 ZNF600Q6ZNG1 722 aa14.15□□□□□ -0.14
CCDC28A-203ENST00000617445 GLYATL2Q8WU03 294 aa14.15□□□□□ -0.14
CCDC28A-203ENST00000617445 RBPMSQ93062 196 aaKnown RBP14.15□□□□□ -0.14
CCDC28A-203ENST00000617445 NAA60Q9H7X0 242 aa14.15□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms