RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 G3V3Q6 166 aa5.13□□□□□ -1.59
VPS53-213ENST00000572334 LDLRAD4O15165 306 aa5.13□□□□□ -1.59
VPS53-213ENST00000572334 BPNT1O95861 308 aa5.13□□□□□ -1.59
VPS53-213ENST00000572334 OR8U9P0C7N5 309 aa5.13□□□□□ -1.59
VPS53-213ENST00000572334 IGHV4-30-4P0DP06 118 aa5.13□□□□□ -1.59
VPS53-213ENST00000572334 MC5RP33032 325 aa5.13□□□□□ -1.59
VPS53-213ENST00000572334 PPT1P50897 306 aa5.13□□□□□ -1.59
VPS53-213ENST00000572334 OR10A3P58181 314 aa5.13□□□□□ -1.59
VPS53-213ENST00000572334 TPPP2P59282 170 aa5.13□□□□□ -1.59
VPS53-213ENST00000572334 NUTF2P61970 127 aaKnown RBP5.13□□□□□ -1.59
VPS53-213ENST00000572334 SRSF7Q16629 238 aaKnown RBP eCLIP5.13□□□□□ -1.59
VPS53-213ENST00000572334 ACTBL2Q562R1 376 aa5.13□□□□□ -1.59
VPS53-213ENST00000572334 PLAC9Q5JTB6 97 aa5.13□□□□□ -1.59
VPS53-213ENST00000572334 FAM74A1Q5RGS3 127 aa5.13□□□□□ -1.59
VPS53-213ENST00000572334 AKR1C8PQ5T2L2 129 aa5.13□□□□□ -1.59
VPS53-213ENST00000572334 UNQ5815/PRO19632Q6UWF5 114 aa5.13□□□□□ -1.59
VPS53-213ENST00000572334 MOB1BQ7L9L4 216 aa5.13□□□□□ -1.59
VPS53-213ENST00000572334 CBLN2Q8IUK8 224 aa5.13□□□□□ -1.59
VPS53-213ENST00000572334 KCNG3Q8TAE7 436 aa5.13□□□□□ -1.59
VPS53-213ENST00000572334 ARHGAP5-AS1Q96IT6 56 aa5.13□□□□□ -1.59
VPS53-213ENST00000572334 BTF3L4Q96K17 158 aa5.13□□□□□ -1.59
VPS53-213ENST00000572334 CLCC1Q96S66 551 aa5.13□□□□□ -1.59
VPS53-213ENST00000572334 RNF5Q99942 180 aa5.13□□□□□ -1.59
VPS53-213ENST00000572334 PRRT1Q99946 306 aa5.13□□□□□ -1.59
VPS53-213ENST00000572334 RPS10P5Q9NQ39 176 aa5.13□□□□□ -1.59
VPS53-213ENST00000572334 STEAP1Q9UHE8 339 aa5.13□□□□□ -1.59
VPS53-213ENST00000572334 HSF4Q9ULV5 492 aa5.13□□□□□ -1.59
VPS53-213ENST00000572334 TEX13DA0A0J9YY54 714 aaPredicted RBP5.12□□□□□ -1.59
VPS53-213ENST00000572334 LCE6AA0A183 80 aa5.12□□□□□ -1.59
VPS53-213ENST00000572334 SMCO3A2RU48 225 aa5.12□□□□□ -1.59
VPS53-213ENST00000572334 B4DEV8 164 aa5.12□□□□□ -1.59
VPS53-213ENST00000572334 SLC17A2O00624 439 aa5.12□□□□□ -1.59
VPS53-213ENST00000572334 SLC25A17O43808 307 aa5.12□□□□□ -1.59
VPS53-213ENST00000572334 NDUFS6O75380 124 aaKnown RBP5.12□□□□□ -1.59
VPS53-213ENST00000572334 DFFBO76075 338 aa5.12□□□□□ -1.59
VPS53-213ENST00000572334 BRI3O95415 125 aa5.12□□□□□ -1.59
VPS53-213ENST00000572334 GCGP01275 180 aa5.12□□□□□ -1.59
VPS53-213ENST00000572334 TRBV12-3P01733 135 aa5.12□□□□□ -1.59
VPS53-213ENST00000572334 TRGV3P03979 118 aa5.12□□□□□ -1.59
VPS53-213ENST00000572334 GSTP1P09211 210 aaKnown RBP5.12□□□□□ -1.59
VPS53-213ENST00000572334 SFTA3P0C7M3 94 aa5.12□□□□□ -1.59
VPS53-213ENST00000572334 TBPP20226 339 aa5.12□□□□□ -1.59
VPS53-213ENST00000572334 CLDN12P56749 244 aa5.12□□□□□ -1.59
VPS53-213ENST00000572334 KLF5Q13887 457 aaPredicted RBP5.12□□□□□ -1.59
VPS53-213ENST00000572334 MOGAT2Q3SYC2 334 aa5.12□□□□□ -1.59
VPS53-213ENST00000572334 ADAMTSL5Q6ZMM2 481 aa5.12□□□□□ -1.59
VPS53-213ENST00000572334 SMIM15Q7Z3B0 74 aa5.12□□□□□ -1.59
VPS53-213ENST00000572334 ZFP82Q8N141 532 aa5.12□□□□□ -1.59
VPS53-213ENST00000572334 UBAC2Q8NBM4 344 aa5.12□□□□□ -1.59
VPS53-213ENST00000572334 OR5T1Q8NG75 326 aa5.12□□□□□ -1.59
VPS53-213ENST00000572334 OR1S2Q8NGQ3 325 aa5.12□□□□□ -1.59
VPS53-213ENST00000572334 OR10R2Q8NGX6 335 aa5.12□□□□□ -1.59
VPS53-213ENST00000572334 SVIPQ8NHG7 77 aa5.12□□□□□ -1.59
VPS53-213ENST00000572334 HIST1H2BAQ96A08 127 aa5.12□□□□□ -1.59
VPS53-213ENST00000572334 FLYWCH2Q96CP2 140 aaKnown RBP5.12□□□□□ -1.59
VPS53-213ENST00000572334 C14orf144Q96I85 54 aa5.12□□□□□ -1.59
VPS53-213ENST00000572334 NDUFAF3Q9BU61 184 aa5.12□□□□□ -1.59
VPS53-213ENST00000572334 PECRQ9BY49 303 aa5.12□□□□□ -1.59
VPS53-213ENST00000572334 RIMS4Q9H426 269 aaPredicted RBP5.12□□□□□ -1.59
VPS53-213ENST00000572334 PLEKHJ1Q9NW61 149 aa5.12□□□□□ -1.59
VPS53-213ENST00000572334 MTFP1Q9UDX5 166 aa5.12□□□□□ -1.59
VPS53-213ENST00000572334 AK6Q9Y3D8 172 aaKnown RBP5.12□□□□□ -1.59
VPS53-213ENST00000572334 V9GY05 133 aa5.12□□□□□ -1.59
VPS53-213ENST00000572334 A0A087WWC5 75 aa5.11□□□□□ -1.59
VPS53-213ENST00000572334 A0A1B0GV90 55 aa5.11□□□□□ -1.59
VPS53-213ENST00000572334 SHISA3A0PJX4 238 aa5.11□□□□□ -1.59
VPS53-213ENST00000572334 IZUMO1RA6ND01 250 aa5.11□□□□□ -1.59
VPS53-213ENST00000572334 H3BUA1 57 aa5.11□□□□□ -1.59
VPS53-213ENST00000572334 M0R143 59 aa5.11□□□□□ -1.59
VPS53-213ENST00000572334 HSPA12AO43301 675 aa5.11□□□□□ -1.59
VPS53-213ENST00000572334 XRCC3O43542 346 aa5.11□□□□□ -1.59
VPS53-213ENST00000572334 JTBO76095 146 aa5.11□□□□□ -1.59
VPS53-213ENST00000572334 CSN3P07498 182 aa5.11□□□□□ -1.59
VPS53-213ENST00000572334 OR5AC1P0C628 307 aa5.11□□□□□ -1.59
VPS53-213ENST00000572334 ZBTB25P24278 435 aa5.11□□□□□ -1.59
VPS53-213ENST00000572334 PRSS3P35030 304 aa5.11□□□□□ -1.59
VPS53-213ENST00000572334 OR2B8PP59922 312 aa5.11□□□□□ -1.59
VPS53-213ENST00000572334 RPS16P62249 146 aaKnown RBP5.11□□□□□ -1.59
VPS53-213ENST00000572334 RANP62826 216 aaKnown RBP5.11□□□□□ -1.59
VPS53-213ENST00000572334 TMEM267Q0VDI3 215 aaPredicted RBP5.11□□□□□ -1.59
VPS53-213ENST00000572334 FXYD3Q14802 87 aa5.11□□□□□ -1.59
VPS53-213ENST00000572334 PLGLAQ15195 96 aa5.11□□□□□ -1.59
VPS53-213ENST00000572334 ZFAND6Q6FIF0 208 aa5.11□□□□□ -1.59
VPS53-213ENST00000572334 PDPNQ86YL7 162 aa5.11□□□□□ -1.59
VPS53-213ENST00000572334 TMEM229BQ8NBD8 167 aa5.11□□□□□ -1.59
VPS53-213ENST00000572334 SLC24A4Q8NFF2 622 aa5.11□□□□□ -1.59
VPS53-213ENST00000572334 ABHD5Q8WTS1 349 aa5.11□□□□□ -1.59
VPS53-213ENST00000572334 EDARADDQ8WWZ3 215 aa5.11□□□□□ -1.59
VPS53-213ENST00000572334 DDB2Q92466 427 aa5.11□□□□□ -1.59
VPS53-213ENST00000572334 SMIM8Q96KF7 97 aa5.11□□□□□ -1.59
VPS53-213ENST00000572334 CABLES2Q9BTV7 478 aa5.11□□□□□ -1.59
VPS53-213ENST00000572334 NMES1Q9C002 83 aa5.11□□□□□ -1.59
VPS53-213ENST00000572334 FAM212BQ9NTI7 297 aaPredicted RBP5.11□□□□□ -1.59
VPS53-213ENST00000572334 GOLT1BQ9Y3E0 138 aa5.11□□□□□ -1.59
VPS53-213ENST00000572334 STRAPQ9Y3F4 350 aaKnown RBP5.11□□□□□ -1.59
VPS53-213ENST00000572334 IGKV1D-8A0A087WSZ0 117 aa5.1□□□□□ -1.59
VPS53-213ENST00000572334 TRBV6-7A0A0A0MS04 114 aa5.1□□□□□ -1.59
VPS53-213ENST00000572334 BORCS7-ASMTA0A0B4J1R7 106 aa5.1□□□□□ -1.59
VPS53-213ENST00000572334 A0A0B4J2A0 478 aa5.1□□□□□ -1.59
VPS53-213ENST00000572334 TMEM272A0A1B0GTI8 110 aa5.1□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 71.6 ms