RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 MC5RP33032 325 aa10.97□□□□□ -0.65
CLK3-206ENST00000562078 PLP1P60201 277 aa10.97□□□□□ -0.65
CLK3-206ENST00000562078 ASPHD1Q5U4P2 390 aa10.97□□□□□ -0.65
CLK3-206ENST00000562078 LINC00173Q6ZV60 143 aa10.97□□□□□ -0.65
CLK3-206ENST00000562078 ZDHHC16Q969W1 377 aa10.97□□□□□ -0.65
CLK3-206ENST00000562078 POM121L2Q96KW2 1035 aa10.97□□□□□ -0.65
CLK3-206ENST00000562078 SIGMAR1Q99720 223 aa10.97□□□□□ -0.65
CLK3-206ENST00000562078 MCRIP2Q9BUT9 160 aaKnown RBP10.97□□□□□ -0.65
CLK3-206ENST00000562078 SCRT2Q9NQ03 307 aa10.97□□□□□ -0.65
CLK3-206ENST00000562078 TNFRSF19Q9NS68 423 aa10.97□□□□□ -0.65
CLK3-206ENST00000562078 ZNF835Q9Y2P0 537 aa10.97□□□□□ -0.65
CLK3-206ENST00000562078 C3orf80F5H4A9 247 aa10.96□□□□□ -0.65
CLK3-206ENST00000562078 H3BUT2 72 aa10.96□□□□□ -0.65
CLK3-206ENST00000562078 K7EP34 96 aa10.96□□□□□ -0.65
CLK3-206ENST00000562078 MGST1P10620 155 aaKnown RBP10.96□□□□□ -0.65
CLK3-206ENST00000562078 USF1P22415 310 aaPredicted RBP10.96□□□□□ -0.65
CLK3-206ENST00000562078 RPL8P62917 257 aaKnown RBP10.96□□□□□ -0.65
CLK3-206ENST00000562078 HIST1H1AQ02539 215 aaPredicted RBP10.96□□□□□ -0.65
CLK3-206ENST00000562078 PLP2Q04941 152 aa10.96□□□□□ -0.65
CLK3-206ENST00000562078 FGFRL1Q8N441 504 aa10.96□□□□□ -0.65
CLK3-206ENST00000562078 OR5A2Q8NGI9 324 aa10.96□□□□□ -0.65
CLK3-206ENST00000562078 IL1F10Q8WWZ1 152 aa10.96□□□□□ -0.65
CLK3-206ENST00000562078 FGF23Q9GZV9 251 aaPredicted RBP10.96□□□□□ -0.65
CLK3-206ENST00000562078 PSG11Q9UQ72 335 aa10.96□□□□□ -0.65
CLK3-206ENST00000562078 KIR2DS1A0A191URI9 304 aa10.96□□□□□ -0.66
CLK3-206ENST00000562078 CDIPTO14735 213 aa10.96□□□□□ -0.66
CLK3-206ENST00000562078 ZG16O60844 167 aa10.96□□□□□ -0.66
CLK3-206ENST00000562078 CA1P00915 261 aaPredicted RBP10.96□□□□□ -0.66
CLK3-206ENST00000562078 GPR183P32249 361 aa10.96□□□□□ -0.66
CLK3-206ENST00000562078 KIR2DS4P43632 304 aa10.96□□□□□ -0.66
CLK3-206ENST00000562078 GPM6AP51674 278 aa10.96□□□□□ -0.66
CLK3-206ENST00000562078 KIR2DS1Q14954 304 aa10.96□□□□□ -0.66
CLK3-206ENST00000562078 ZNF718Q3SXZ3 478 aa10.96□□□□□ -0.66
CLK3-206ENST00000562078 RAB1CQ92928 201 aa10.96□□□□□ -0.66
CLK3-206ENST00000562078 NPFFR1Q9GZQ6 430 aa10.96□□□□□ -0.66
CLK3-206ENST00000562078 OR1A1Q9P1Q5 309 aa10.96□□□□□ -0.66
CLK3-206ENST00000562078 AGFG2O95081 481 aa10.95□□□□□ -0.66
CLK3-206ENST00000562078 BCL3P20749 454 aa10.95□□□□□ -0.66
CLK3-206ENST00000562078 MEF2CQ06413 473 aaPredicted RBP10.95□□□□□ -0.66
CLK3-206ENST00000562078 ZNF48Q96MX3 618 aaPredicted RBP10.95□□□□□ -0.66
CLK3-206ENST00000562078 CKS1BP61024 79 aa10.95□□□□□ -0.66
CLK3-206ENST00000562078 RPL24P83731 157 aaKnown RBP10.95□□□□□ -0.66
CLK3-206ENST00000562078 TMEM249Q2WGJ8 235 aa10.95□□□□□ -0.66
CLK3-206ENST00000562078 CENPWQ5EE01 88 aa10.95□□□□□ -0.66
CLK3-206ENST00000562078 AP1S3Q96PC3 154 aa10.95□□□□□ -0.66
CLK3-206ENST00000562078 C9JCJ5 164 aa10.94□□□□□ -0.66
CLK3-206ENST00000562078 TRAPPC2LH3BP13 241 aa10.94□□□□□ -0.66
CLK3-206ENST00000562078 SS18L1O75177 396 aaPredicted RBP10.94□□□□□ -0.66
CLK3-206ENST00000562078 WISP2O76076 250 aa10.94□□□□□ -0.66
CLK3-206ENST00000562078 PSG3Q16557 428 aa10.94□□□□□ -0.66
CLK3-206ENST00000562078 FAM120AOSQ5T036 256 aa10.94□□□□□ -0.66
CLK3-206ENST00000562078 PQLC2Q6ZP29 291 aa10.94□□□□□ -0.66
CLK3-206ENST00000562078 MDP1Q86V88 176 aa10.94□□□□□ -0.66
CLK3-206ENST00000562078 PERPQ96FX8 193 aa10.94□□□□□ -0.66
CLK3-206ENST00000562078 TEX48A0A1B0GUV7 120 aa10.94□□□□□ -0.66
CLK3-206ENST00000562078 C9orf118A6NHY6 69 aa10.94□□□□□ -0.66
CLK3-206ENST00000562078 APOA2P02652 100 aa10.94□□□□□ -0.66
CLK3-206ENST00000562078 HTR1DP28221 377 aa10.94□□□□□ -0.66
CLK3-206ENST00000562078 VWC2Q2TAL6 325 aa10.94□□□□□ -0.66
CLK3-206ENST00000562078 UBALD1Q8TB05 177 aa10.94□□□□□ -0.66
CLK3-206ENST00000562078 TXNDC17Q9BRA2 123 aa10.94□□□□□ -0.66
CLK3-206ENST00000562078 KCNS2Q9ULS6 477 aa10.94□□□□□ -0.66
CLK3-206ENST00000562078 HEATR1Q9H583 2144 aaKnown RBP10.94□□□□□ -0.66
CLK3-206ENST00000562078 TRGV10A0A0A0MS01 117 aa10.93□□□□□ -0.66
CLK3-206ENST00000562078 PIGBOS1A0A0B4J2F0 54 aa10.93□□□□□ -0.66
CLK3-206ENST00000562078 SYS1-DBNDD2H3BUS1 97 aa10.93□□□□□ -0.66
CLK3-206ENST00000562078 ZNF207O43670 478 aaKnown RBP10.93□□□□□ -0.66
CLK3-206ENST00000562078 STAG3L2P0CL84 134 aa10.93□□□□□ -0.66
CLK3-206ENST00000562078 GNG4P50150 75 aa10.93□□□□□ -0.66
CLK3-206ENST00000562078 COX19Q49B96 90 aa10.93□□□□□ -0.66
CLK3-206ENST00000562078 SLC35E4Q6ICL7 350 aa10.93□□□□□ -0.66
CLK3-206ENST00000562078 IGFL3Q6UXB1 125 aa10.93□□□□□ -0.66
CLK3-206ENST00000562078 C2orf91Q6ZV80 131 aa10.93□□□□□ -0.66
CLK3-206ENST00000562078 OR2K2Q8NGT1 345 aa10.93□□□□□ -0.66
CLK3-206ENST00000562078 SERTAD4Q9NUC0 356 aa10.93□□□□□ -0.66
CLK3-206ENST00000562078 SSUH2Q9Y2M2 353 aa10.93□□□□□ -0.66
CLK3-206ENST00000562078 PIEZO1Q92508 2521 aa10.93□□□□□ -0.66
CLK3-206ENST00000562078 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP10.93□□□□□ -0.66
CLK3-206ENST00000562078 FAM90A26D6RGX4 464 aa10.93□□□□□ -0.66
CLK3-206ENST00000562078 CXorf1O96002 111 aa10.93□□□□□ -0.66
CLK3-206ENST00000562078 HLA-DRB1P01911 266 aa10.93□□□□□ -0.66
CLK3-206ENST00000562078 CD1BP29016 333 aa10.93□□□□□ -0.66
CLK3-206ENST00000562078 G6PCP35575 357 aa10.93□□□□□ -0.66
CLK3-206ENST00000562078 SRSF7Q16629 238 aaKnown RBP eCLIP10.93□□□□□ -0.66
CLK3-206ENST00000562078 CEACAM21Q3KPI0 293 aa10.93□□□□□ -0.66
CLK3-206ENST00000562078 SPATA46Q5T0L3 261 aa10.93□□□□□ -0.66
CLK3-206ENST00000562078 GDF5OSQ5U4N7 250 aa10.93□□□□□ -0.66
CLK3-206ENST00000562078 PET117Q6UWS5 81 aa10.93□□□□□ -0.66
CLK3-206ENST00000562078 NANOS1Q8WY41 292 aaKnown RBP10.93□□□□□ -0.66
CLK3-206ENST00000562078 URB1-AS1Q96HZ7 61 aa10.93□□□□□ -0.66
CLK3-206ENST00000562078 SSBP4Q9BWG4 385 aaPredicted RBP10.93□□□□□ -0.66
CLK3-206ENST00000562078 H0Y8G0 127 aa10.92□□□□□ -0.66
CLK3-206ENST00000562078 CRXO43186 299 aaPredicted RBP10.92□□□□□ -0.66
CLK3-206ENST00000562078 HSD52Q0P140 79 aa10.92□□□□□ -0.66
CLK3-206ENST00000562078 OR10AG1Q8NH19 301 aa10.92□□□□□ -0.66
CLK3-206ENST00000562078 TRIB1Q96RU8 372 aa10.92□□□□□ -0.66
CLK3-206ENST00000562078 PMCHL2Q9BQD1 86 aa10.92□□□□□ -0.66
CLK3-206ENST00000562078 ZNF331Q9NQX6 463 aaPredicted RBP10.92□□□□□ -0.66
CLK3-206ENST00000562078 JKAMPQ9P055 326 aa10.92□□□□□ -0.66
CLK3-206ENST00000562078 LY96Q9Y6Y9 160 aa10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 75.5 ms