RNA–Protein interactions for RNA: ENST00000542033.5

USP28-210, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 852 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-210ENST00000542033 ZNF226Q9NYT6 803 aa2.37□□□□□ -2.03
USP28-210ENST00000542033 ABRACLQ9P1F3 81 aa2.37□□□□□ -2.03
USP28-210ENST00000542033 RABAC1Q9UI14 185 aa2.37□□□□□ -2.03
USP28-210ENST00000542033 ASF1AQ9Y294 204 aa2.37□□□□□ -2.03
USP28-210ENST00000542033 COL1A1P02452 1464 aaPredicted RBP2.37□□□□□ -2.03
USP28-210ENST00000542033 PDCD11Q14690 1871 aaKnown RBP2.37□□□□□ -2.03
USP28-210ENST00000542033 GBF1Q92538 1859 aa2.37□□□□□ -2.03
USP28-210ENST00000542033 MIA3Q5JRA6 1907 aa2.36□□□□□ -2.03
USP28-210ENST00000542033 ZNF646O15015 1829 aaPredicted RBP2.36□□□□□ -2.03
USP28-210ENST00000542033 ARFGEF1Q9Y6D6 1849 aa2.36□□□□□ -2.03
USP28-210ENST00000542033 IGHV1OR15-1A0A075B7D0 117 aa2.36□□□□□ -2.03
USP28-210ENST00000542033 TRAV14DV4A0A0A6YYC5 116 aa2.36□□□□□ -2.03
USP28-210ENST00000542033 A0A0A6YYD5 115 aa2.36□□□□□ -2.03
USP28-210ENST00000542033 NSG1A0A0A6YYJ2 146 aa2.36□□□□□ -2.03
USP28-210ENST00000542033 SPAARA0A1B0GVQ0 90 aa2.36□□□□□ -2.03
USP28-210ENST00000542033 ZNF860A6NHJ4 632 aa2.36□□□□□ -2.03
USP28-210ENST00000542033 C9JAW5 83 aa2.36□□□□□ -2.03
USP28-210ENST00000542033 TMEM262E9PQX1 116 aa2.36□□□□□ -2.03
USP28-210ENST00000542033 H0YJW9 148 aa2.36□□□□□ -2.03
USP28-210ENST00000542033 TMEM250H0YL14 139 aa2.36□□□□□ -2.03
USP28-210ENST00000542033 FXYD1O00168 92 aa2.36□□□□□ -2.03
USP28-210ENST00000542033 CRXO43186 299 aaPredicted RBP2.36□□□□□ -2.03
USP28-210ENST00000542033 EEF1E1O43324 174 aaKnown RBP2.36□□□□□ -2.03
USP28-210ENST00000542033 SFT2D2O95562 160 aa2.36□□□□□ -2.03
USP28-210ENST00000542033 LY6G6DO95868 133 aa2.36□□□□□ -2.03
USP28-210ENST00000542033 OR2H2O95918 312 aa2.36□□□□□ -2.03
USP28-210ENST00000542033 SOD1P00441 154 aa2.36□□□□□ -2.03
USP28-210ENST00000542033 HPNP05981 417 aa2.36□□□□□ -2.03
USP28-210ENST00000542033 GPX1P07203 203 aa2.36□□□□□ -2.03
USP28-210ENST00000542033 TACSTD2P09758 323 aa2.36□□□□□ -2.03
USP28-210ENST00000542033 ELK1P19419 428 aa2.36□□□□□ -2.03
USP28-210ENST00000542033 CRYBB3P26998 211 aa2.36□□□□□ -2.03
USP28-210ENST00000542033 LOXP28300 417 aaPredicted RBP2.36□□□□□ -2.03
USP28-210ENST00000542033 PRSS3P35030 304 aa2.36□□□□□ -2.03
USP28-210ENST00000542033 GLRXP35754 106 aa2.36□□□□□ -2.03
USP28-210ENST00000542033 SRP14P37108 136 aaKnown RBP2.36□□□□□ -2.03
USP28-210ENST00000542033 NSG1P42857 185 aa2.36□□□□□ -2.03
USP28-210ENST00000542033 REG1BP48304 166 aa2.36□□□□□ -2.03
USP28-210ENST00000542033 HINT1P49773 126 aaPredicted RBP2.36□□□□□ -2.03
USP28-210ENST00000542033 DAPP51397 102 aa2.36□□□□□ -2.03
USP28-210ENST00000542033 EMP1P54849 157 aa2.36□□□□□ -2.03
USP28-210ENST00000542033 FOXA1P55317 472 aa2.36□□□□□ -2.03
USP28-210ENST00000542033 CLDN6P56747 220 aa2.36□□□□□ -2.03
USP28-210ENST00000542033 H2BFSP57053 126 aa2.36□□□□□ -2.03
USP28-210ENST00000542033 CXCL6P80162 114 aa2.36□□□□□ -2.03
USP28-210ENST00000542033 SLC25A11Q02978 314 aaKnown RBP2.36□□□□□ -2.03
USP28-210ENST00000542033 SSBP1Q04837 148 aaKnown RBP2.36□□□□□ -2.03
USP28-210ENST00000542033 CCL15Q16663 113 aa2.36□□□□□ -2.03
USP28-210ENST00000542033 RPEL1Q2QD12 228 aa2.36□□□□□ -2.03
USP28-210ENST00000542033 SPATA45Q537H7 98 aa2.36□□□□□ -2.03
USP28-210ENST00000542033 UBE2NLQ5JXB2 153 aa2.36□□□□□ -2.03
USP28-210ENST00000542033 GLYATL3Q5SZD4 288 aa2.36□□□□□ -2.03
USP28-210ENST00000542033 TRIM40Q6P9F5 258 aa2.36□□□□□ -2.03
USP28-210ENST00000542033 CXCL17Q6UXB2 119 aa2.36□□□□□ -2.03
USP28-210ENST00000542033 LINC00471Q8N535 108 aa2.36□□□□□ -2.03
USP28-210ENST00000542033 ZIC4Q8N9L1 334 aa2.36□□□□□ -2.03
USP28-210ENST00000542033 ZNF740Q8NDX6 193 aa2.36□□□□□ -2.03
USP28-210ENST00000542033 VN1R2Q8NFZ6 395 aa2.36□□□□□ -2.03
USP28-210ENST00000542033 OR51A4Q8NGJ6 313 aa2.36□□□□□ -2.03
USP28-210ENST00000542033 OR52I1Q8NGK6 324 aa2.36□□□□□ -2.03
USP28-210ENST00000542033 GEMIN6Q8WXD5 167 aaKnown RBP2.36□□□□□ -2.03
USP28-210ENST00000542033 STARD4Q96DR4 205 aa2.36□□□□□ -2.03
USP28-210ENST00000542033 TMEM101Q96IK0 257 aa2.36□□□□□ -2.03
USP28-210ENST00000542033 TMEM70Q9BUB7 260 aa2.36□□□□□ -2.03
USP28-210ENST00000542033 RNF126Q9BV68 326 aa2.36□□□□□ -2.03
USP28-210ENST00000542033 C19orf24Q9BVV8 132 aa2.36□□□□□ -2.03
USP28-210ENST00000542033 SCRT1Q9BWW7 348 aa2.36□□□□□ -2.03
USP28-210ENST00000542033 DEFB126Q9BYW3 111 aa2.36□□□□□ -2.03
USP28-210ENST00000542033 NPVFQ9HCQ7 196 aa2.36□□□□□ -2.03
USP28-210ENST00000542033 ACER3Q9NUN7 267 aa2.36□□□□□ -2.03
USP28-210ENST00000542033 AK3Q9UIJ7 227 aa2.36□□□□□ -2.03
USP28-210ENST00000542033 PRNDQ9UKY0 176 aa2.36□□□□□ -2.03
USP28-210ENST00000542033 HIGD1AQ9Y241 93 aa2.36□□□□□ -2.03
USP28-210ENST00000542033 TP53TG1Q9Y2A0 90 aa2.36□□□□□ -2.03
USP28-210ENST00000542033 ZNF443Q9Y2A4 671 aaPredicted RBP2.36□□□□□ -2.03
USP28-210ENST00000542033 WASHC3Q9Y3C0 194 aa2.36□□□□□ -2.03
USP28-210ENST00000542033 NOP16Q9Y3C1 178 aaKnown RBP2.36□□□□□ -2.03
USP28-210ENST00000542033 FIS1Q9Y3D6 152 aa2.36□□□□□ -2.03
USP28-210ENST00000542033 YTHDF2Q9Y5A9 579 aaKnown RBP2.36□□□□□ -2.03
USP28-210ENST00000542033 ZNF780BQ9Y6R6 833 aa2.36□□□□□ -2.03
USP28-210ENST00000542033 SCN7AQ01118 1682 aa2.36□□□□□ -2.03
USP28-210ENST00000542033 SBF1O95248 1867 aa2.36□□□□□ -2.03
USP28-210ENST00000542033 SLIT2O94813 1529 aa2.36□□□□□ -2.03
USP28-210ENST00000542033 BAZ2BQ9UIF8 2168 aaKnown RBP2.36□□□□□ -2.03
USP28-210ENST00000542033 RGPD3A6NKT7 1758 aaPredicted RBP2.36□□□□□ -2.03
USP28-210ENST00000542033 RGPD4Q7Z3J3 1758 aa2.36□□□□□ -2.03
USP28-210ENST00000542033 PARP14Q460N5 1801 aa2.35□□□□□ -2.03
USP28-210ENST00000542033 ALS2Q96Q42 1657 aa2.35□□□□□ -2.03
USP28-210ENST00000542033 DOT1LQ8TEK3 1739 aa2.35□□□□□ -2.03
USP28-210ENST00000542033 IGLV8-61A0A075B6I0 122 aa2.35□□□□□ -2.03
USP28-210ENST00000542033 LOC102724200A0A096LPH7 203 aaPredicted RBP2.35□□□□□ -2.03
USP28-210ENST00000542033 A0A1B0GV50 99 aa2.35□□□□□ -2.03
USP28-210ENST00000542033 ODAMA1E959 279 aa2.35□□□□□ -2.03
USP28-210ENST00000542033 C7orf71A4D174 169 aa2.35□□□□□ -2.03
USP28-210ENST00000542033 C5orf49A4QMS7 147 aa2.35□□□□□ -2.03
USP28-210ENST00000542033 ARRDC5A6NEK1 342 aa2.35□□□□□ -2.03
USP28-210ENST00000542033 OR2T8A6NH00 312 aa2.35□□□□□ -2.03
USP28-210ENST00000542033 FNDC10F2Z333 226 aa2.35□□□□□ -2.03
USP28-210ENST00000542033 C17orf112F2Z3M2 114 aa2.35□□□□□ -2.03
USP28-210ENST00000542033 K7EN84 100 aa2.35□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 67.5 ms