RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 GPR146Q96CH1 333 aa7.97□□□□□ -1.13
CD44-227ENST00000528086 NEURL2Q9BR09 285 aa7.97□□□□□ -1.13
CD44-227ENST00000528086 RETNQ9HD89 108 aa7.97□□□□□ -1.13
CD44-227ENST00000528086 FKBP11Q9NYL4 201 aa7.97□□□□□ -1.13
CD44-227ENST00000528086 COPZ2Q9P299 210 aa7.97□□□□□ -1.13
CD44-227ENST00000528086 DNAH1Q9P2D7 4330 aa7.97□□□□□ -1.13
CD44-227ENST00000528086 TENM2Q9NT68 2774 aa7.97□□□□□ -1.13
CD44-227ENST00000528086 TEX13DA0A0J9YY54 714 aaPredicted RBP7.96□□□□□ -1.14
CD44-227ENST00000528086 FABP12A6NFH5 140 aa7.96□□□□□ -1.14
CD44-227ENST00000528086 ZNF207O43670 478 aaKnown RBP7.96□□□□□ -1.14
CD44-227ENST00000528086 CD81P60033 236 aa7.96□□□□□ -1.14
CD44-227ENST00000528086 TMEM187Q14656 261 aa7.96□□□□□ -1.14
CD44-227ENST00000528086 FAM106AQ4KMX7 169 aa7.96□□□□□ -1.14
CD44-227ENST00000528086 LILRB2Q8N423 598 aa7.96□□□□□ -1.14
CD44-227ENST00000528086 BSCL2Q96G97 398 aaPredicted RBP7.96□□□□□ -1.14
CD44-227ENST00000528086 TMEM56Q96MV1 263 aa7.96□□□□□ -1.14
CD44-227ENST00000528086 ATP6V0BQ99437 205 aa7.96□□□□□ -1.14
CD44-227ENST00000528086 SDHCQ99643 169 aaPredicted RBP7.96□□□□□ -1.14
CD44-227ENST00000528086 LYSTQ99698 3801 aa7.96□□□□□ -1.14
CD44-227ENST00000528086 EDA2RQ9HAV5 297 aa7.96□□□□□ -1.14
CD44-227ENST00000528086 TECRQ9NZ01 308 aaKnown RBP7.96□□□□□ -1.14
CD44-227ENST00000528086 TMEM56-RWDD3S4R434 201 aa7.96□□□□□ -1.14
CD44-227ENST00000528086 SCAF4O95104 1147 aaKnown RBP7.95□□□□□ -1.14
CD44-227ENST00000528086 S100GP29377 79 aa7.95□□□□□ -1.14
CD44-227ENST00000528086 ELLP55199 621 aaPredicted RBP7.95□□□□□ -1.14
CD44-227ENST00000528086 SURF2Q15527 256 aaPredicted RBP7.95□□□□□ -1.14
CD44-227ENST00000528086 ZNF57Q68EA5 555 aaPredicted RBP7.95□□□□□ -1.14
CD44-227ENST00000528086 SGPP2Q8IWX5 399 aa7.95□□□□□ -1.14
CD44-227ENST00000528086 CCDC71LQ8N9Z2 235 aa7.95□□□□□ -1.14
CD44-227ENST00000528086 DYNLRB2Q8TF09 96 aa7.95□□□□□ -1.14
CD44-227ENST00000528086 MISP3Q96FF7 219 aa7.95□□□□□ -1.14
CD44-227ENST00000528086 GALNT14Q96FL9 552 aa7.95□□□□□ -1.14
CD44-227ENST00000528086 HIPK2Q9H2X6 1198 aa7.95□□□□□ -1.14
CD44-227ENST00000528086 THYN1Q9P016 225 aa7.95□□□□□ -1.14
CD44-227ENST00000528086 RSL24D1Q9UHA3 163 aaKnown RBP7.95□□□□□ -1.14
CD44-227ENST00000528086 A0A1B0GU03 582 aa7.94□□□□□ -1.14
CD44-227ENST00000528086 DISC1C4P0D8 188 aa7.94□□□□□ -1.14
CD44-227ENST00000528086 NDUFA4O00483 81 aa7.94□□□□□ -1.14
CD44-227ENST00000528086 APOHP02749 345 aaPredicted RBP7.94□□□□□ -1.14
CD44-227ENST00000528086 AKR1C2P52895 323 aa7.94□□□□□ -1.14
CD44-227ENST00000528086 GUCA2BQ16661 112 aa7.94□□□□□ -1.14
CD44-227ENST00000528086 TRIM16LQ309B1 348 aa7.94□□□□□ -1.14
CD44-227ENST00000528086 NMSQ5H8A3 153 aa7.94□□□□□ -1.14
CD44-227ENST00000528086 SPSB3Q6PJ21 355 aa7.94□□□□□ -1.14
CD44-227ENST00000528086 UBAC2Q8NBM4 344 aa7.94□□□□□ -1.14
CD44-227ENST00000528086 RBPMSQ93062 196 aaKnown RBP7.94□□□□□ -1.14
CD44-227ENST00000528086 OR10C1Q96KK4 312 aa7.94□□□□□ -1.14
CD44-227ENST00000528086 PRRT1Q99946 306 aa7.94□□□□□ -1.14
CD44-227ENST00000528086 ZFAND3Q9H8U3 227 aa7.94□□□□□ -1.14
CD44-227ENST00000528086 MRPL27Q9P0M9 148 aaKnown RBP7.94□□□□□ -1.14
CD44-227ENST00000528086 RABL2AQ9UBK7 228 aaPredicted RBP7.94□□□□□ -1.14
CD44-227ENST00000528086 CACNG5Q9UF02 275 aa7.94□□□□□ -1.14
CD44-227ENST00000528086 RABL2BQ9UNT1 228 aa7.94□□□□□ -1.14
CD44-227ENST00000528086 RYR2Q92736 4967 aa7.94□□□□□ -1.14
CD44-227ENST00000528086 PLECQ15149 4684 aaKnown RBP7.94□□□□□ -1.14
CD44-227ENST00000528086 AGRNO00468 2067 aa7.93□□□□□ -1.14
CD44-227ENST00000528086 IGHV3-49A0A0A0MS15 119 aa7.93□□□□□ -1.14
CD44-227ENST00000528086 OR11H12B2RN74 326 aa7.93□□□□□ -1.14
CD44-227ENST00000528086 K7EMT4 169 aa7.93□□□□□ -1.14
CD44-227ENST00000528086 NXPH3O95157 252 aa7.93□□□□□ -1.14
CD44-227ENST00000528086 TMEM50AO95807 157 aa7.93□□□□□ -1.14
CD44-227ENST00000528086 MFAP4P55083 255 aa7.93□□□□□ -1.14
CD44-227ENST00000528086 BAK1Q16611 211 aa7.93□□□□□ -1.14
CD44-227ENST00000528086 ODF3L2Q3SX64 289 aa7.93□□□□□ -1.14
CD44-227ENST00000528086 Q56UQ5 140 aa7.93□□□□□ -1.14
CD44-227ENST00000528086 TMEM268Q5VZI3 342 aa7.93□□□□□ -1.14
CD44-227ENST00000528086 FAM90A2PQ658T7 463 aa7.93□□□□□ -1.14
CD44-227ENST00000528086 LYZL2Q7Z4W2 148 aa7.93□□□□□ -1.14
CD44-227ENST00000528086 GTSCR1Q86UQ5 136 aa7.93□□□□□ -1.14
CD44-227ENST00000528086 SLC35G3Q8N808 338 aa7.93□□□□□ -1.14
CD44-227ENST00000528086 OR1L6Q8NGR2 347 aa7.93□□□□□ -1.14
CD44-227ENST00000528086 OR52E5Q8NH55 327 aa7.93□□□□□ -1.14
CD44-227ENST00000528086 MARC2Q969Z3 335 aa7.93□□□□□ -1.14
CD44-227ENST00000528086 PINX1Q96BK5 328 aaKnown RBP7.93□□□□□ -1.14
CD44-227ENST00000528086 SRRQ9GZT4 340 aa7.93□□□□□ -1.14
CD44-227ENST00000528086 DAZ1Q9NQZ3 744 aaKnown RBP7.93□□□□□ -1.14
CD44-227ENST00000528086 SMPXQ9UHP9 88 aa7.93□□□□□ -1.14
CD44-227ENST00000528086 C14orf166Q9Y224 244 aaKnown RBP7.93□□□□□ -1.14
CD44-227ENST00000528086 UFC1Q9Y3C8 167 aa7.93□□□□□ -1.14
CD44-227ENST00000528086 TRAV25A0A0B4J276 109 aa7.92□□□□□ -1.14
CD44-227ENST00000528086 C15orf62A8K5M9 175 aa7.92□□□□□ -1.14
CD44-227ENST00000528086 ZNF701M0R085 212 aaPredicted RBP7.92□□□□□ -1.14
CD44-227ENST00000528086 CHEK1O14757 476 aa7.92□□□□□ -1.14
CD44-227ENST00000528086 B3GALNT1O75752 331 aa7.92□□□□□ -1.14
CD44-227ENST00000528086 IFNA17P01571 189 aa7.92□□□□□ -1.14
CD44-227ENST00000528086 IGKV1-17P01599 117 aa7.92□□□□□ -1.14
CD44-227ENST00000528086 SPCS3P61009 180 aa7.92□□□□□ -1.14
CD44-227ENST00000528086 ERHP84090 104 aaKnown RBP7.92□□□□□ -1.14
CD44-227ENST00000528086 DHODHQ02127 395 aa7.92□□□□□ -1.14
CD44-227ENST00000528086 ANKRD55Q3KP44 614 aa7.92□□□□□ -1.14
CD44-227ENST00000528086 TOMM20LQ6UXN7 152 aa7.92□□□□□ -1.14
CD44-227ENST00000528086 RNF2Q99496 336 aa7.92□□□□□ -1.14
CD44-227ENST00000528086 TXN2Q99757 166 aa7.92□□□□□ -1.14
CD44-227ENST00000528086 FAM110AQ9BQ89 295 aa7.92□□□□□ -1.14
CD44-227ENST00000528086 C20orf24Q9BUV8 137 aa7.92□□□□□ -1.14
CD44-227ENST00000528086 SRD5A3Q9H8P0 318 aa7.92□□□□□ -1.14
CD44-227ENST00000528086 MCUBQ9NWR8 336 aa7.92□□□□□ -1.14
CD44-227ENST00000528086 GAR1Q9NY12 217 aaKnown RBP7.92□□□□□ -1.14
CD44-227ENST00000528086 IGHV3OR16-13A0A075B7E8 117 aa7.91□□□□□ -1.14
CD44-227ENST00000528086 IGHV3-74A0A0B4J1X5 117 aa7.91□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms