RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 WNK1Q9H4A3 2382 aa22.94■■□□□ 1.26
LIMCH1-211ENST00000509638 MFSD2BA6NFX1 497 aa22.93■■□□□ 1.26
LIMCH1-211ENST00000509638 S4R3C0 116 aa22.93■■□□□ 1.26
LIMCH1-211ENST00000509638 IFNA10P01566 189 aa22.93■■□□□ 1.26
LIMCH1-211ENST00000509638 TMEM170AQ8WVE7 144 aa22.93■■□□□ 1.26
LIMCH1-211ENST00000509638 U3KQ87 197 aa22.93■■□□□ 1.26
LIMCH1-211ENST00000509638 I3L521 148 aa22.92■■□□□ 1.26
LIMCH1-211ENST00000509638 M0QZ24 198 aa22.92■■□□□ 1.26
LIMCH1-211ENST00000509638 CXCL3P19876 107 aa22.92■■□□□ 1.26
LIMCH1-211ENST00000509638 S100A10P60903 97 aa22.92■■□□□ 1.26
LIMCH1-211ENST00000509638 FCN2Q15485 313 aa22.92■■□□□ 1.26
LIMCH1-211ENST00000509638 C2orf83Q53S99 150 aa22.92■■□□□ 1.26
LIMCH1-211ENST00000509638 PINX1Q96BK5 328 aaKnown RBP22.92■■□□□ 1.26
LIMCH1-211ENST00000509638 LSM5Q9Y4Y9 91 aaKnown RBP22.92■■□□□ 1.26
LIMCH1-211ENST00000509638 H3BP45 60 aa22.91■■□□□ 1.26
LIMCH1-211ENST00000509638 IL15RAQ13261 267 aa22.91■■□□□ 1.26
LIMCH1-211ENST00000509638 PVRIGQ6DKI7 326 aa22.91■■□□□ 1.26
LIMCH1-211ENST00000509638 NMES1Q9C002 83 aa22.91■■□□□ 1.26
LIMCH1-211ENST00000509638 IGHV3-21A0A0B4J1V1 117 aa22.9■■□□□ 1.26
LIMCH1-211ENST00000509638 K7EIM0 57 aa22.9■■□□□ 1.26
LIMCH1-211ENST00000509638 K7EPK0 472 aa22.9■■□□□ 1.26
LIMCH1-211ENST00000509638 TSPAN15O95858 294 aa22.9■■□□□ 1.26
LIMCH1-211ENST00000509638 IGHV3-23P01764 117 aa22.9■■□□□ 1.26
LIMCH1-211ENST00000509638 RRAS2P62070 204 aaPredicted RBP22.9■■□□□ 1.26
LIMCH1-211ENST00000509638 RUNX1Q01196 453 aa22.9■■□□□ 1.26
LIMCH1-211ENST00000509638 ZNF343Q6P1L6 599 aa22.9■■□□□ 1.26
LIMCH1-211ENST00000509638 OR11H7Q8NGC8 314 aa22.9■■□□□ 1.26
LIMCH1-211ENST00000509638 CXorf58Q96LI9 332 aa22.9■■□□□ 1.26
LIMCH1-211ENST00000509638 PKD1L1Q8TDX9 2849 aa22.9■■□□□ 1.26
LIMCH1-211ENST00000509638 CORTO00230 105 aa22.89■■□□□ 1.26
LIMCH1-211ENST00000509638 RAB32Q13637 225 aa22.89■■□□□ 1.26
LIMCH1-211ENST00000509638 OR4F17Q8NGA8 305 aa22.89■■□□□ 1.26
LIMCH1-211ENST00000509638 EEF1AKMT3Q96AZ1 226 aa22.89■■□□□ 1.26
LIMCH1-211ENST00000509638 DUX3Q96PT4 197 aa22.89■■□□□ 1.26
LIMCH1-211ENST00000509638 OR4F4Q96R69 305 aa22.89■■□□□ 1.26
LIMCH1-211ENST00000509638 LY86O95711 162 aa22.89■■□□□ 1.25
LIMCH1-211ENST00000509638 TMEM50AO95807 157 aa22.89■■□□□ 1.25
LIMCH1-211ENST00000509638 MT-CO2P00403 227 aa22.89■■□□□ 1.25
LIMCH1-211ENST00000509638 WDR89Q96FK6 387 aaPredicted RBP22.89■■□□□ 1.25
LIMCH1-211ENST00000509638 RAX2Q96IS3 184 aa22.89■■□□□ 1.25
LIMCH1-211ENST00000509638 CCDC140Q96MF4 163 aa22.89■■□□□ 1.25
LIMCH1-211ENST00000509638 RAB40CQ96S21 281 aa22.89■■□□□ 1.25
LIMCH1-211ENST00000509638 ANKRD34BA5PLL1 514 aa22.88■■□□□ 1.25
LIMCH1-211ENST00000509638 C15orf62A8K5M9 175 aa22.88■■□□□ 1.25
LIMCH1-211ENST00000509638 I3L2K1 104 aa22.88■■□□□ 1.25
LIMCH1-211ENST00000509638 CYCSP99999 105 aaKnown RBP22.88■■□□□ 1.25
LIMCH1-211ENST00000509638 NOXA1Q86UR1 476 aa22.88■■□□□ 1.25
LIMCH1-211ENST00000509638 VN1R17PQ8TDU5 208 aa22.88■■□□□ 1.25
LIMCH1-211ENST00000509638 OR4C12Q96R67 309 aa22.88■■□□□ 1.25
LIMCH1-211ENST00000509638 OPRK1P41145 380 aa22.87■■□□□ 1.25
LIMCH1-211ENST00000509638 LRRC37A5PQ49AS3 106 aa22.87■■□□□ 1.25
LIMCH1-211ENST00000509638 SPANXN5Q5MJ07 72 aa22.87■■□□□ 1.25
LIMCH1-211ENST00000509638 ETV3LQ6ZN32 361 aa22.87■■□□□ 1.25
LIMCH1-211ENST00000509638 SCARB1Q8WTV0 552 aa22.87■■□□□ 1.25
LIMCH1-211ENST00000509638 PAIP2BQ9ULR5 123 aaKnown RBP22.87■■□□□ 1.25
LIMCH1-211ENST00000509638 TRBV12-3P01733 135 aa22.86■■□□□ 1.25
LIMCH1-211ENST00000509638 IGHV3-48P01763 117 aa22.86■■□□□ 1.25
LIMCH1-211ENST00000509638 OR11H1Q8NG94 326 aa22.86■■□□□ 1.25
LIMCH1-211ENST00000509638 ZNF502Q8TBZ5 544 aa22.86■■□□□ 1.25
LIMCH1-211ENST00000509638 PSENENQ9NZ42 101 aa22.86■■□□□ 1.25
LIMCH1-211ENST00000509638 TRBV7-1A0A0A6YYK4 115 aa22.85■■□□□ 1.25
LIMCH1-211ENST00000509638 CCL24O00175 119 aa22.85■■□□□ 1.25
LIMCH1-211ENST00000509638 PAX9P55771 341 aa22.85■■□□□ 1.25
LIMCH1-211ENST00000509638 ATP5IP56385 69 aaPredicted RBP22.85■■□□□ 1.25
LIMCH1-211ENST00000509638 RPP30P78346 268 aaKnown RBP22.85■■□□□ 1.25
LIMCH1-211ENST00000509638 RNASEH2CQ8TDP1 164 aaKnown RBP22.85■■□□□ 1.25
LIMCH1-211ENST00000509638 SMIM8Q96KF7 97 aa22.85■■□□□ 1.25
LIMCH1-211ENST00000509638 C21orf62Q9NYP8 219 aa22.85■■□□□ 1.25
LIMCH1-211ENST00000509638 STRAPQ9Y3F4 350 aaKnown RBP22.85■■□□□ 1.25
LIMCH1-211ENST00000509638 IGHV4OR15-8A0A075B7B6 117 aa22.84■■□□□ 1.25
LIMCH1-211ENST00000509638 A0A087WW49 117 aa22.84■■□□□ 1.25
LIMCH1-211ENST00000509638 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP22.84■■□□□ 1.25
LIMCH1-211ENST00000509638 PF4P02776 101 aa22.84■■□□□ 1.25
LIMCH1-211ENST00000509638 IFNA4P05014 189 aa22.84■■□□□ 1.25
LIMCH1-211ENST00000509638 OR8U8P0C7N1 319 aa22.84■■□□□ 1.25
LIMCH1-211ENST00000509638 PPP1R1CQ8WVI7 109 aa22.84■■□□□ 1.25
LIMCH1-211ENST00000509638 FNDC4Q9H6D8 234 aaPredicted RBP22.84■■□□□ 1.25
LIMCH1-211ENST00000509638 PEF1Q9UBV8 284 aaKnown RBP22.84■■□□□ 1.25
LIMCH1-211ENST00000509638 L7N2F9 121 aa22.84■■□□□ 1.25
LIMCH1-211ENST00000509638 RAB11AP62491 216 aa22.84■■□□□ 1.25
LIMCH1-211ENST00000509638 VAMP2P63027 116 aa22.84■■□□□ 1.25
LIMCH1-211ENST00000509638 ZNF616Q08AN1 781 aa22.84■■□□□ 1.25
LIMCH1-211ENST00000509638 CLEC19AQ6UXS0 136 aa22.84■■□□□ 1.25
LIMCH1-211ENST00000509638 OR1N2Q8NGR9 330 aa22.84■■□□□ 1.25
LIMCH1-211ENST00000509638 GPR183P32249 361 aa22.83■■□□□ 1.25
LIMCH1-211ENST00000509638 TAS2R30P59541 319 aa22.83■■□□□ 1.25
LIMCH1-211ENST00000509638 FHL3Q13643 280 aa22.83■■□□□ 1.25
LIMCH1-211ENST00000509638 UBAC2Q8NBM4 344 aa22.83■■□□□ 1.25
LIMCH1-211ENST00000509638 RANGRFQ9HD47 186 aaPredicted RBP22.83■■□□□ 1.25
LIMCH1-211ENST00000509638 PPP5D1E7EU14 171 aa22.82■■□□□ 1.24
LIMCH1-211ENST00000509638 TSC22D2O75157 780 aa22.82■■□□□ 1.24
LIMCH1-211ENST00000509638 PVALBP20472 110 aaPredicted RBP22.82■■□□□ 1.24
LIMCH1-211ENST00000509638 FAM209BQ5JX69 171 aa22.82■■□□□ 1.24
LIMCH1-211ENST00000509638 Q6ZNX1 250 aa22.82■■□□□ 1.24
LIMCH1-211ENST00000509638 ZNF436Q9C0F3 470 aaPredicted RBP22.82■■□□□ 1.24
LIMCH1-211ENST00000509638 C11orf1Q9H5F2 150 aa22.82■■□□□ 1.24
LIMCH1-211ENST00000509638 DEDDO75618 318 aa22.81■■□□□ 1.24
LIMCH1-211ENST00000509638 HSPB1P04792 205 aaKnown RBP22.81■■□□□ 1.24
LIMCH1-211ENST00000509638 DPF1Q92782 380 aa22.81■■□□□ 1.24
LIMCH1-211ENST00000509638 RPS10-NUDT3A0A1W2PQS6 291 aa22.8■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms