RNA–Protein interactions for RNA: ENST00000497984.5

SMC4-227, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 5

Gene SMC4, Length 563 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-227ENST00000497984 LRRC25Q8N386 305 aaPredicted RBP0.3□□□□□ -2.36
SMC4-227ENST00000497984 LINC00471Q8N535 108 aa0.3□□□□□ -2.36
SMC4-227ENST00000497984 OR4D11Q8NGI4 311 aa0.3□□□□□ -2.36
SMC4-227ENST00000497984 OR13C4Q8NGS5 318 aa0.3□□□□□ -2.36
SMC4-227ENST00000497984 MCFD2Q8NI22 146 aa0.3□□□□□ -2.36
SMC4-227ENST00000497984 LINC00526Q96FQ7 95 aa0.3□□□□□ -2.36
SMC4-227ENST00000497984 C11orf68Q9H3H3 251 aaKnown RBP0.3□□□□□ -2.36
SMC4-227ENST00000497984 USE1Q9NZ43 259 aa0.3□□□□□ -2.36
SMC4-227ENST00000497984 KLK9Q9UKQ9 250 aa0.3□□□□□ -2.36
SMC4-227ENST00000497984 ARFGEF3Q5TH69 2177 aa0.3□□□□□ -2.36
SMC4-227ENST00000497984 MUC2Q02817 5179 aa0.3□□□□□ -2.36
SMC4-227ENST00000497984 C9orf84Q5VXU9 1444 aa0.3□□□□□ -2.36
SMC4-227ENST00000497984 STRCQ7RTU9 1775 aa0.29□□□□□ -2.36
SMC4-227ENST00000497984 TTC28Q96AY4 2481 aa0.29□□□□□ -2.36
SMC4-227ENST00000497984 TGIF2-C20orf24A0A0A6YYL0 155 aa0.29□□□□□ -2.36
SMC4-227ENST00000497984 A0A1B0GV50 99 aa0.29□□□□□ -2.36
SMC4-227ENST00000497984 BUB1B-PAK6H3BSN5 160 aa0.29□□□□□ -2.36
SMC4-227ENST00000497984 TGOLN2O43493 480 aa0.29□□□□□ -2.36
SMC4-227ENST00000497984 HYPMO75409 117 aa0.29□□□□□ -2.36
SMC4-227ENST00000497984 ISG15P05161 165 aa0.29□□□□□ -2.36
SMC4-227ENST00000497984 SSR2P43308 183 aa0.29□□□□□ -2.36
SMC4-227ENST00000497984 CNBPP62633 177 aaKnown RBP0.29□□□□□ -2.36
SMC4-227ENST00000497984 MIR17HGQ75NE6 70 aa0.29□□□□□ -2.36
SMC4-227ENST00000497984 PHF13Q86YI8 300 aaPredicted RBP0.29□□□□□ -2.36
SMC4-227ENST00000497984 Q8N814 137 aa0.29□□□□□ -2.36
SMC4-227ENST00000497984 OR5A1Q8NGJ0 315 aa0.29□□□□□ -2.36
SMC4-227ENST00000497984 SLC35B4Q969S0 331 aa0.29□□□□□ -2.36
SMC4-227ENST00000497984 PTH2Q96A98 100 aa0.29□□□□□ -2.36
SMC4-227ENST00000497984 OPTNQ96CV9 577 aa0.29□□□□□ -2.36
SMC4-227ENST00000497984 IMP4Q96G21 291 aaKnown RBP0.29□□□□□ -2.36
SMC4-227ENST00000497984 GINS4Q9BRT9 223 aa0.29□□□□□ -2.36
SMC4-227ENST00000497984 FBXL12Q9NXK8 326 aa0.29□□□□□ -2.36
SMC4-227ENST00000497984 COL4A5P29400 1685 aa0.29□□□□□ -2.36
SMC4-227ENST00000497984 TRBV6-8A0A0A6YYG3 113 aa0.28□□□□□ -2.36
SMC4-227ENST00000497984 HLA-DRB1P01911 266 aa0.28□□□□□ -2.36
SMC4-227ENST00000497984 MIFP14174 115 aa0.28□□□□□ -2.36
SMC4-227ENST00000497984 AP2S1P53680 142 aaPredicted RBP0.28□□□□□ -2.36
SMC4-227ENST00000497984 RAB4BP61018 213 aa0.28□□□□□ -2.36
SMC4-227ENST00000497984 RHEBQ15382 184 aa0.28□□□□□ -2.36
SMC4-227ENST00000497984 KHDC3LQ587J8 217 aa0.28□□□□□ -2.36
SMC4-227ENST00000497984 RNASE10Q5GAN6 216 aaKnown RBP0.28□□□□□ -2.36
SMC4-227ENST00000497984 CDKL4Q5MAI5 379 aa0.28□□□□□ -2.36
SMC4-227ENST00000497984 SPANXN5Q5MJ07 72 aa0.28□□□□□ -2.36
SMC4-227ENST00000497984 HIST2H3PS2Q5TEC6 136 aa0.28□□□□□ -2.36
SMC4-227ENST00000497984 OOSP2Q86WS3 158 aa0.28□□□□□ -2.36
SMC4-227ENST00000497984 Q8N6K4 173 aa0.28□□□□□ -2.36
SMC4-227ENST00000497984 OR4E2Q8NGC2 313 aa0.28□□□□□ -2.36
SMC4-227ENST00000497984 H1FXQ92522 213 aaKnown RBP0.28□□□□□ -2.36
SMC4-227ENST00000497984 NIPSNAP1Q9BPW8 284 aa0.28□□□□□ -2.36
SMC4-227ENST00000497984 TMEM147Q9BVK8 224 aa0.28□□□□□ -2.36
SMC4-227ENST00000497984 PKIGQ9Y2B9 76 aa0.28□□□□□ -2.36
SMC4-227ENST00000497984 LSM5Q9Y4Y9 91 aaKnown RBP0.28□□□□□ -2.36
SMC4-227ENST00000497984 UNC79Q9P2D8 2635 aa0.28□□□□□ -2.37
SMC4-227ENST00000497984 TOPBP1Q92547 1522 aa0.28□□□□□ -2.37
SMC4-227ENST00000497984 A0A0D9SG52 128 aa0.27□□□□□ -2.37
SMC4-227ENST00000497984 M0R2N4 97 aa0.27□□□□□ -2.37
SMC4-227ENST00000497984 KCNK1O00180 336 aa0.27□□□□□ -2.37
SMC4-227ENST00000497984 FAAHO00519 579 aa0.27□□□□□ -2.37
SMC4-227ENST00000497984 DCTN3O75935 186 aa0.27□□□□□ -2.37
SMC4-227ENST00000497984 LYZL6O75951 148 aa0.27□□□□□ -2.37
SMC4-227ENST00000497984 UBL3O95164 117 aa0.27□□□□□ -2.37
SMC4-227ENST00000497984 TPM3P06753 285 aa0.27□□□□□ -2.37
SMC4-227ENST00000497984 COX6A1P12074 109 aa0.27□□□□□ -2.37
SMC4-227ENST00000497984 HIST1H1TP22492 207 aaPredicted RBP0.27□□□□□ -2.37
SMC4-227ENST00000497984 DEFA1P59665 94 aa0.27□□□□□ -2.37
SMC4-227ENST00000497984 RPS20P60866 119 aaKnown RBP0.27□□□□□ -2.37
SMC4-227ENST00000497984 SNRPD2P62316 118 aaKnown RBP0.27□□□□□ -2.37
SMC4-227ENST00000497984 OR2F1Q13607 317 aa0.27□□□□□ -2.37
SMC4-227ENST00000497984 KCNJ8Q15842 424 aa0.27□□□□□ -2.37
SMC4-227ENST00000497984 GDF5OSQ5U4N7 250 aa0.27□□□□□ -2.37
SMC4-227ENST00000497984 DPPA3Q6W0C5 159 aa0.27□□□□□ -2.37
SMC4-227ENST00000497984 SBSPONQ8IVN8 264 aa0.27□□□□□ -2.37
SMC4-227ENST00000497984 SIGLECL1Q8N7X8 197 aa0.27□□□□□ -2.37
SMC4-227ENST00000497984 OR52R1Q8NGF1 315 aa0.27□□□□□ -2.37
SMC4-227ENST00000497984 DNAJC9Q8WXX5 260 aa0.27□□□□□ -2.37
SMC4-227ENST00000497984 PPP1R2P1Q96PQ5 205 aa0.27□□□□□ -2.37
SMC4-227ENST00000497984 ULBP3Q9BZM4 244 aa0.27□□□□□ -2.37
SMC4-227ENST00000497984 NKIRAS1Q9NYS0 192 aa0.27□□□□□ -2.37
SMC4-227ENST00000497984 RIC1Q4ADV7 1423 aa0.27□□□□□ -2.37
SMC4-227ENST00000497984 TRAV12-1A0A0B4J245 112 aa0.26□□□□□ -2.37
SMC4-227ENST00000497984 EXOC1LA0A1B0GW35 172 aa0.26□□□□□ -2.37
SMC4-227ENST00000497984 PQLC2LA1A4F0 135 aa0.26□□□□□ -2.37
SMC4-227ENST00000497984 DPRXA6NFQ7 191 aa0.26□□□□□ -2.37
SMC4-227ENST00000497984 GOLGA6L19H0YKK7 550 aa0.26□□□□□ -2.37
SMC4-227ENST00000497984 CETN3O15182 167 aa0.26□□□□□ -2.37
SMC4-227ENST00000497984 INE1O15225 51 aa0.26□□□□□ -2.37
SMC4-227ENST00000497984 CALB1P05937 261 aa0.26□□□□□ -2.37
SMC4-227ENST00000497984 MGST1P10620 155 aaKnown RBP0.26□□□□□ -2.37
SMC4-227ENST00000497984 CASQ1P31415 396 aa0.26□□□□□ -2.37
SMC4-227ENST00000497984 RPL5P46777 297 aaKnown RBP0.26□□□□□ -2.37
SMC4-227ENST00000497984 CDC42P60953 191 aa0.26□□□□□ -2.37
SMC4-227ENST00000497984 TPM4P67936 248 aa0.26□□□□□ -2.37
SMC4-227ENST00000497984 RHOGP84095 191 aa0.26□□□□□ -2.37
SMC4-227ENST00000497984 DEFB113Q30KQ7 82 aa0.26□□□□□ -2.37
SMC4-227ENST00000497984 C8orf74Q6P047 294 aa0.26□□□□□ -2.37
SMC4-227ENST00000497984 SFT2D1Q8WV19 159 aa0.26□□□□□ -2.37
SMC4-227ENST00000497984 TOMM6Q96B49 74 aa0.26□□□□□ -2.37
SMC4-227ENST00000497984 MIXL1Q9H2W2 232 aa0.26□□□□□ -2.37
SMC4-227ENST00000497984 PRTFDC1Q9NRG1 225 aa0.26□□□□□ -2.37
SMC4-227ENST00000497984 TAS2R4Q9NYW5 299 aa0.26□□□□□ -2.37
Retrieved 100 of 20,778 RNA–protein pairs in 58.8 ms