RNA–Protein interactions for RNA: ENST00000476739.5

HDAC3-208, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 422 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-208ENST00000476739 ATP5G2Q06055 141 aa7.45□□□□□ -1.22
HDAC3-208ENST00000476739 BTN1A1Q13410 526 aa7.45□□□□□ -1.22
HDAC3-208ENST00000476739 EXOSC2Q13868 293 aaKnown RBP7.45□□□□□ -1.22
HDAC3-208ENST00000476739 TMEM187Q14656 261 aa7.45□□□□□ -1.22
HDAC3-208ENST00000476739 KLK9Q2XQG4 91 aa7.45□□□□□ -1.22
HDAC3-208ENST00000476739 C15orf32Q32M92 178 aa7.45□□□□□ -1.22
HDAC3-208ENST00000476739 SPINK9Q5DT21 86 aa7.45□□□□□ -1.22
HDAC3-208ENST00000476739 TMED4Q7Z7H5 227 aa7.45□□□□□ -1.22
HDAC3-208ENST00000476739 SLC25A42Q86VD7 318 aa7.45□□□□□ -1.22
HDAC3-208ENST00000476739 UXS1Q8NBZ7 420 aa7.45□□□□□ -1.22
HDAC3-208ENST00000476739 NECAP1Q8NC96 275 aa7.45□□□□□ -1.22
HDAC3-208ENST00000476739 OR4A16Q8NH70 328 aa7.45□□□□□ -1.22
HDAC3-208ENST00000476739 DPF1Q92782 380 aa7.45□□□□□ -1.22
HDAC3-208ENST00000476739 USMG5Q96IX5 58 aa7.45□□□□□ -1.22
HDAC3-208ENST00000476739 FBXL7Q9UJT9 491 aa7.45□□□□□ -1.22
HDAC3-208ENST00000476739 KLK9Q9UKQ9 250 aa7.45□□□□□ -1.22
HDAC3-208ENST00000476739 ALG5Q9Y673 324 aa7.45□□□□□ -1.22
HDAC3-208ENST00000476739 NOTCH1P46531 2555 aa7.44□□□□□ -1.22
HDAC3-208ENST00000476739 RPS10-NUDT3A0A1W2PQS6 291 aa7.44□□□□□ -1.22
HDAC3-208ENST00000476739 MFSD2BA6NFX1 497 aa7.44□□□□□ -1.22
HDAC3-208ENST00000476739 FAM223BA6NKX1 122 aa7.44□□□□□ -1.22
HDAC3-208ENST00000476739 PPP5D1E7EU14 171 aa7.44□□□□□ -1.22
HDAC3-208ENST00000476739 INMT-MINDY4F8WBC2 141 aa7.44□□□□□ -1.22
HDAC3-208ENST00000476739 PLA2G10O15496 165 aa7.44□□□□□ -1.22
HDAC3-208ENST00000476739 ST8SIA3O43173 380 aa7.44□□□□□ -1.22
HDAC3-208ENST00000476739 RAB4BP61018 213 aa7.44□□□□□ -1.22
HDAC3-208ENST00000476739 DHODHQ02127 395 aa7.44□□□□□ -1.22
HDAC3-208ENST00000476739 RELQ04864 619 aaPredicted RBP7.44□□□□□ -1.22
HDAC3-208ENST00000476739 TMEM268Q5VZI3 342 aa7.44□□□□□ -1.22
HDAC3-208ENST00000476739 FAM223AQ8IWN6 122 aa7.44□□□□□ -1.22
HDAC3-208ENST00000476739 SGPP2Q8IWX5 399 aa7.44□□□□□ -1.22
HDAC3-208ENST00000476739 OR5B3Q8NH48 314 aa7.44□□□□□ -1.22
HDAC3-208ENST00000476739 LSM10Q969L4 123 aaKnown RBP7.44□□□□□ -1.22
HDAC3-208ENST00000476739 GPR146Q96CH1 333 aa7.44□□□□□ -1.22
HDAC3-208ENST00000476739 GALNT14Q96FL9 552 aa7.44□□□□□ -1.22
HDAC3-208ENST00000476739 CCDC140Q96MF4 163 aa7.44□□□□□ -1.22
HDAC3-208ENST00000476739 TMEM56Q96MV1 263 aa7.44□□□□□ -1.22
HDAC3-208ENST00000476739 SCGB3A2Q96PL1 93 aa7.44□□□□□ -1.22
HDAC3-208ENST00000476739 C7orf50Q9BRJ6 194 aaKnown RBP7.44□□□□□ -1.22
HDAC3-208ENST00000476739 SRSF8Q9BRL6 282 aaKnown RBP7.44□□□□□ -1.22
HDAC3-208ENST00000476739 PEF1Q9UBV8 284 aaKnown RBP7.44□□□□□ -1.22
HDAC3-208ENST00000476739 MLXQ9UH92 298 aa7.44□□□□□ -1.22
HDAC3-208ENST00000476739 TMEM56-RWDD3S4R434 201 aa7.44□□□□□ -1.22
HDAC3-208ENST00000476739 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP7.43□□□□□ -1.22
HDAC3-208ENST00000476739 IGHV3-21A0A0B4J1V1 117 aa7.43□□□□□ -1.22
HDAC3-208ENST00000476739 SEC14L6B5MCN3 397 aa7.43□□□□□ -1.22
HDAC3-208ENST00000476739 BMPR1BO00238 502 aa7.43□□□□□ -1.22
HDAC3-208ENST00000476739 OVOL1O14753 267 aa7.43□□□□□ -1.22
HDAC3-208ENST00000476739 LYRM1O43325 122 aa7.43□□□□□ -1.22
HDAC3-208ENST00000476739 WIPF1O43516 503 aa7.43□□□□□ -1.22
HDAC3-208ENST00000476739 TSC22D2O75157 780 aa7.43□□□□□ -1.22
HDAC3-208ENST00000476739 DUS4LO95620 317 aaKnown RBP7.43□□□□□ -1.22
HDAC3-208ENST00000476739 DEFA4P12838 97 aa7.43□□□□□ -1.22
HDAC3-208ENST00000476739 HSPE1P61604 102 aaKnown RBP7.43□□□□□ -1.22
HDAC3-208ENST00000476739 PRCDQ00LT1 54 aa7.43□□□□□ -1.22
HDAC3-208ENST00000476739 FGL1Q08830 312 aa7.43□□□□□ -1.22
HDAC3-208ENST00000476739 SLC25A24Q6NUK1 477 aa7.43□□□□□ -1.22
HDAC3-208ENST00000476739 ZNF429Q86V71 674 aa7.43□□□□□ -1.22
HDAC3-208ENST00000476739 OR2C3Q8N628 320 aa7.43□□□□□ -1.22
HDAC3-208ENST00000476739 SLC35G3Q8N808 338 aa7.43□□□□□ -1.22
HDAC3-208ENST00000476739 SLC25A21Q9BQT8 299 aaPredicted RBP7.43□□□□□ -1.22
HDAC3-208ENST00000476739 AURKAIP1Q9NWT8 199 aaPredicted RBP7.43□□□□□ -1.22
HDAC3-208ENST00000476739 FKBP11Q9NYL4 201 aa7.43□□□□□ -1.22
HDAC3-208ENST00000476739 FLVCR2Q9UPI3 526 aa7.43□□□□□ -1.22
HDAC3-208ENST00000476739 C7orf66A4D0T2 115 aa7.42□□□□□ -1.22
HDAC3-208ENST00000476739 NAP1L6A6NFF2 107 aa7.42□□□□□ -1.22
HDAC3-208ENST00000476739 TEX46H3BTG2 121 aa7.42□□□□□ -1.22
HDAC3-208ENST00000476739 NDUFB6O95139 128 aa7.42□□□□□ -1.22
HDAC3-208ENST00000476739 NXPH3O95157 252 aa7.42□□□□□ -1.22
HDAC3-208ENST00000476739 HLA-AP01891 365 aaKnown RBP7.42□□□□□ -1.22
HDAC3-208ENST00000476739 MECP2P51608 486 aaKnown RBP7.42□□□□□ -1.22
HDAC3-208ENST00000476739 EGFEM1PQ0D2K5 195 aa7.42□□□□□ -1.22
HDAC3-208ENST00000476739 PPP1R1AQ13522 171 aa7.42□□□□□ -1.22
HDAC3-208ENST00000476739 KLF5Q13887 457 aaPredicted RBP7.42□□□□□ -1.22
HDAC3-208ENST00000476739 RBMS2Q15434 407 aaKnown RBP7.42□□□□□ -1.22
HDAC3-208ENST00000476739 ANKRD55Q3KP44 614 aa7.42□□□□□ -1.22
HDAC3-208ENST00000476739 TMEM128Q5BJH2 165 aa7.42□□□□□ -1.22
HDAC3-208ENST00000476739 FAM209BQ5JX69 171 aa7.42□□□□□ -1.22
HDAC3-208ENST00000476739 C11orf87Q6NUJ2 197 aa7.42□□□□□ -1.22
HDAC3-208ENST00000476739 CLEC19AQ6UXS0 136 aa7.42□□□□□ -1.22
HDAC3-208ENST00000476739 LYZL2Q7Z4W2 148 aa7.42□□□□□ -1.22
HDAC3-208ENST00000476739 HAPLN4Q86UW8 402 aa7.42□□□□□ -1.22
HDAC3-208ENST00000476739 RNASE11Q8TAA1 199 aaKnown RBP7.42□□□□□ -1.22
HDAC3-208ENST00000476739 ASB13Q8WXK3 278 aa7.42□□□□□ -1.22
HDAC3-208ENST00000476739 RRNAD1Q96FB5 475 aaKnown RBP7.42□□□□□ -1.22
HDAC3-208ENST00000476739 MCRIP2Q9BUT9 160 aaKnown RBP7.42□□□□□ -1.22
HDAC3-208ENST00000476739 SAV1Q9H4B6 383 aaPredicted RBP7.42□□□□□ -1.22
HDAC3-208ENST00000476739 CACNG5Q9UF02 275 aa7.42□□□□□ -1.22
HDAC3-208ENST00000476739 KCNIP3Q9Y2W7 256 aa7.42□□□□□ -1.22
HDAC3-208ENST00000476739 F11RQ9Y624 299 aaKnown RBP7.42□□□□□ -1.22
HDAC3-208ENST00000476739 TRAV6A0A075B6T7 132 aa7.41□□□□□ -1.22
HDAC3-208ENST00000476739 PRAF2O60831 178 aa7.41□□□□□ -1.22
HDAC3-208ENST00000476739 SCO1O75880 301 aa7.41□□□□□ -1.22
HDAC3-208ENST00000476739 ATG12O94817 140 aa7.41□□□□□ -1.22
HDAC3-208ENST00000476739 SFT2D2O95562 160 aa7.41□□□□□ -1.22
HDAC3-208ENST00000476739 FABP1P07148 127 aa7.41□□□□□ -1.22
HDAC3-208ENST00000476739 HIST1H1BP16401 226 aaKnown RBP7.41□□□□□ -1.22
HDAC3-208ENST00000476739 EDN2P20800 178 aa7.41□□□□□ -1.22
HDAC3-208ENST00000476739 VAMP1P23763 118 aa7.41□□□□□ -1.22
HDAC3-208ENST00000476739 SYNJ2BPP57105 145 aa7.41□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms