RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 LINC00869P0C866 280 aa10.89□□□□□ -0.67
VPS54-203ENST00000409558 RND2P52198 227 aa10.89□□□□□ -0.67
VPS54-203ENST00000409558 Q8NA96 180 aa10.89□□□□□ -0.67
VPS54-203ENST00000409558 OR10G8Q8NGN5 311 aa10.89□□□□□ -0.67
VPS54-203ENST00000409558 PIEZO1Q92508 2521 aa10.89□□□□□ -0.67
VPS54-203ENST00000409558 UBE2L3P68036 154 aaKnown RBP10.89□□□□□ -0.67
VPS54-203ENST00000409558 OR1B1Q8NGR6 318 aa10.89□□□□□ -0.67
VPS54-203ENST00000409558 ACACBO00763 2458 aa10.89□□□□□ -0.67
VPS54-203ENST00000409558 RAI1Q7Z5J4 1906 aaPredicted RBP10.89□□□□□ -0.67
VPS54-203ENST00000409558 IGHV3OR16-8A0A075B7F1 116 aa10.89□□□□□ -0.67
VPS54-203ENST00000409558 ZNF729A6NN14 1252 aaPredicted RBP10.89□□□□□ -0.67
VPS54-203ENST00000409558 E7EQL1 145 aa10.89□□□□□ -0.67
VPS54-203ENST00000409558 DDB2Q92466 427 aa10.89□□□□□ -0.67
VPS54-203ENST00000409558 GAL3ST2Q9H3Q3 398 aa10.89□□□□□ -0.67
VPS54-203ENST00000409558 POLQO75417 2590 aa10.88□□□□□ -0.67
VPS54-203ENST00000409558 UPK2O00526 184 aa10.88□□□□□ -0.67
VPS54-203ENST00000409558 NUPR1O60356 82 aa10.88□□□□□ -0.67
VPS54-203ENST00000409558 AMBPP02760 352 aa10.88□□□□□ -0.67
VPS54-203ENST00000409558 GNG5P63218 68 aa10.88□□□□□ -0.67
VPS54-203ENST00000409558 ERHP84090 104 aaKnown RBP10.88□□□□□ -0.67
VPS54-203ENST00000409558 DEFA6Q01524 100 aa10.88□□□□□ -0.67
VPS54-203ENST00000409558 RUSC1-AS1Q66K80 236 aa10.88□□□□□ -0.67
VPS54-203ENST00000409558 OR1P1Q8NH06 330 aa10.88□□□□□ -0.67
VPS54-203ENST00000409558 MRPL36Q9P0J6 103 aaKnown RBP10.88□□□□□ -0.67
VPS54-203ENST00000409558 STAG3L2P0CL84 134 aa10.88□□□□□ -0.67
VPS54-203ENST00000409558 STAG3L3P0CL85 134 aa10.88□□□□□ -0.67
VPS54-203ENST00000409558 CEACAM8P31997 349 aaPredicted RBP10.88□□□□□ -0.67
VPS54-203ENST00000409558 HES1Q14469 280 aa10.88□□□□□ -0.67
VPS54-203ENST00000409558 KRTCAP3Q53RY4 240 aa10.88□□□□□ -0.67
VPS54-203ENST00000409558 OR5AU1Q8NGC0 362 aa10.88□□□□□ -0.67
VPS54-203ENST00000409558 RNASE6Q93091 150 aaKnown RBP10.88□□□□□ -0.67
VPS54-203ENST00000409558 SLC35E1Q96K37 410 aa10.88□□□□□ -0.67
VPS54-203ENST00000409558 ZNF430Q9H8G1 570 aaPredicted RBP10.88□□□□□ -0.67
VPS54-203ENST00000409558 SRD5A3Q9H8P0 318 aa10.88□□□□□ -0.67
VPS54-203ENST00000409558 IGHV3-35A0A0C4DH35 117 aa10.88□□□□□ -0.67
VPS54-203ENST00000409558 NUBP1P53384 320 aa10.88□□□□□ -0.67
VPS54-203ENST00000409558 CENPWQ5EE01 88 aa10.88□□□□□ -0.67
VPS54-203ENST00000409558 ZNF439Q8NDP4 499 aa10.88□□□□□ -0.67
VPS54-203ENST00000409558 PRNDQ9UKY0 176 aa10.88□□□□□ -0.67
VPS54-203ENST00000409558 DOPEY2Q9Y3R5 2298 aa10.88□□□□□ -0.67
VPS54-203ENST00000409558 COX7A2P2O60397 106 aa10.88□□□□□ -0.67
VPS54-203ENST00000409558 GNG4P50150 75 aa10.88□□□□□ -0.67
VPS54-203ENST00000409558 CTDSP1Q9GZU7 261 aa10.88□□□□□ -0.67
VPS54-203ENST00000409558 TMEM14BQ9NUH8 114 aa10.88□□□□□ -0.67
VPS54-203ENST00000409558 HELTA6NFD8 242 aa10.87□□□□□ -0.67
VPS54-203ENST00000409558 FCN1O00602 326 aa10.87□□□□□ -0.67
VPS54-203ENST00000409558 ARF6P62330 175 aa10.87□□□□□ -0.67
VPS54-203ENST00000409558 PDE6DO43924 150 aa10.87□□□□□ -0.67
VPS54-203ENST00000409558 SLC25A48Q6ZT89 311 aaKnown RBP10.87□□□□□ -0.67
VPS54-203ENST00000409558 TRBV24-1A0A075B6N3 115 aa10.87□□□□□ -0.67
VPS54-203ENST00000409558 F2Z2F3 143 aa10.87□□□□□ -0.67
VPS54-203ENST00000409558 TMEM178BH3BS89 294 aa10.87□□□□□ -0.67
VPS54-203ENST00000409558 CCL21O00585 134 aa10.87□□□□□ -0.67
VPS54-203ENST00000409558 MT-CO2P00403 227 aa10.87□□□□□ -0.67
VPS54-203ENST00000409558 CGB3P0DN86 165 aa10.87□□□□□ -0.67
VPS54-203ENST00000409558 CGB7P0DN87 165 aa10.87□□□□□ -0.67
VPS54-203ENST00000409558 AREGP15514 252 aa10.87□□□□□ -0.67
VPS54-203ENST00000409558 IGFL3Q6UXB1 125 aa10.87□□□□□ -0.67
VPS54-203ENST00000409558 BAGE3Q86Y29 109 aa10.87□□□□□ -0.67
VPS54-203ENST00000409558 BAGE2Q86Y30 109 aa10.87□□□□□ -0.67
VPS54-203ENST00000409558 TCTEX1D1Q8N7M0 179 aa10.87□□□□□ -0.67
VPS54-203ENST00000409558 RAXQ9Y2V3 346 aa10.87□□□□□ -0.67
VPS54-203ENST00000409558 VSTM5A8MXK1 200 aa10.86□□□□□ -0.67
VPS54-203ENST00000409558 K7EN84 100 aa10.86□□□□□ -0.67
VPS54-203ENST00000409558 WT1-ASQ06250 92 aa10.86□□□□□ -0.67
VPS54-203ENST00000409558 FBXL15Q9H469 300 aa10.86□□□□□ -0.67
VPS54-203ENST00000409558 PITPNC1Q9UKF7 332 aa10.86□□□□□ -0.67
VPS54-203ENST00000409558 USP9YO00507 2555 aaPredicted RBP10.86□□□□□ -0.67
VPS54-203ENST00000409558 CUBNO60494 3623 aa10.86□□□□□ -0.67
VPS54-203ENST00000409558 SNURFLB1AK76 121 aa10.86□□□□□ -0.67
VPS54-203ENST00000409558 CNIH1O95406 144 aa10.86□□□□□ -0.67
VPS54-203ENST00000409558 ADMP35318 185 aa10.86□□□□□ -0.67
VPS54-203ENST00000409558 CDSNQ15517 529 aa10.86□□□□□ -0.67
VPS54-203ENST00000409558 KLF17Q5JT82 389 aaPredicted RBP10.86□□□□□ -0.67
VPS54-203ENST00000409558 FNDC4Q9H6D8 234 aaPredicted RBP10.86□□□□□ -0.67
VPS54-203ENST00000409558 PTPRBP23467 1997 aa10.86□□□□□ -0.67
VPS54-203ENST00000409558 IGHV1-69-2A0A0G2JMI3 117 aa10.85□□□□□ -0.67
VPS54-203ENST00000409558 H0YJW9 148 aa10.85□□□□□ -0.67
VPS54-203ENST00000409558 CAMPP49913 170 aa10.85□□□□□ -0.67
VPS54-203ENST00000409558 PNKDQ8N490 385 aa10.85□□□□□ -0.67
VPS54-203ENST00000409558 KCNIP2Q9NS61 270 aa10.85□□□□□ -0.67
VPS54-203ENST00000409558 LINC00312Q9Y6C7 94 aa10.85□□□□□ -0.67
VPS54-203ENST00000409558 KIR2DS2P43631 304 aa10.85□□□□□ -0.67
VPS54-203ENST00000409558 TBR1Q16650 682 aa10.85□□□□□ -0.67
VPS54-203ENST00000409558 TUBG2Q9NRH3 451 aa10.85□□□□□ -0.67
VPS54-203ENST00000409558 SSUH2Q9Y2M2 353 aa10.85□□□□□ -0.67
VPS54-203ENST00000409558 CNN1P51911 297 aaKnown RBP10.85□□□□□ -0.67
VPS54-203ENST00000409558 CENPVQ7Z7K6 275 aaPredicted RBP10.85□□□□□ -0.67
VPS54-203ENST00000409558 OR1L8Q8NGR8 309 aa10.85□□□□□ -0.67
VPS54-203ENST00000409558 SAMD10Q9BYL1 202 aa10.85□□□□□ -0.67
VPS54-203ENST00000409558 LPAR2Q9HBW0 351 aa10.85□□□□□ -0.67
VPS54-203ENST00000409558 ZNF355PQ9NSJ1 428 aa10.85□□□□□ -0.67
VPS54-203ENST00000409558 NAT8BQ9UHF3 227 aa10.85□□□□□ -0.67
VPS54-203ENST00000409558 S100A12P80511 92 aa10.85□□□□□ -0.67
VPS54-203ENST00000409558 PRCDQ00LT1 54 aa10.85□□□□□ -0.67
VPS54-203ENST00000409558 SSX2Q16385 188 aa10.85□□□□□ -0.67
VPS54-203ENST00000409558 TEX38Q6PEX7 206 aa10.85□□□□□ -0.67
VPS54-203ENST00000409558 OR1L6Q8NGR2 347 aa10.85□□□□□ -0.67
VPS54-203ENST00000409558 FOXA2Q9Y261 457 aaPredicted RBP10.85□□□□□ -0.67
VPS54-203ENST00000409558 INSIG2Q9Y5U4 225 aa10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 123.2 ms