RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 PROB1E7EW31 1015 aa8.64□□□□□ -1.03
LIMCH1-203ENST00000396595 C18orf12Q96KH6 178 aa8.64□□□□□ -1.03
LIMCH1-203ENST00000396595 SPANXDQ9BXN6 97 aa8.64□□□□□ -1.03
LIMCH1-203ENST00000396595 TEX45Q8NA69 505 aa8.63□□□□□ -1.03
LIMCH1-203ENST00000396595 FMC1Q96HJ9 113 aa8.63□□□□□ -1.03
LIMCH1-203ENST00000396595 RTTNQ86VV8 2226 aa8.63□□□□□ -1.03
LIMCH1-203ENST00000396595 POLR2AP24928 1970 aaKnown RBP8.63□□□□□ -1.03
LIMCH1-203ENST00000396595 OTOFQ9HC10 1997 aa8.63□□□□□ -1.03
LIMCH1-203ENST00000396595 TGFBR3LH3BV60 316 aa8.63□□□□□ -1.03
LIMCH1-203ENST00000396595 TIAF1O95411 115 aa8.63□□□□□ -1.03
LIMCH1-203ENST00000396595 ZNF56Q15929 161 aa8.63□□□□□ -1.03
LIMCH1-203ENST00000396595 FAM159AQ6UWV7 190 aa8.63□□□□□ -1.03
LIMCH1-203ENST00000396595 HIST1H2BLQ99880 126 aa8.63□□□□□ -1.03
LIMCH1-203ENST00000396595 ZNF703Q9H7S9 590 aaPredicted RBP8.63□□□□□ -1.03
LIMCH1-203ENST00000396595 ADAMTSL5Q6ZMM2 481 aa8.63□□□□□ -1.03
LIMCH1-203ENST00000396595 CIARTQ8N365 385 aaPredicted RBP8.63□□□□□ -1.03
LIMCH1-203ENST00000396595 NXT2Q9NPJ8 142 aaKnown RBP8.63□□□□□ -1.03
LIMCH1-203ENST00000396595 TDRD6O60522 2096 aaKnown RBP8.63□□□□□ -1.03
LIMCH1-203ENST00000396595 C1orf162Q8NEQ5 155 aaPredicted RBP8.63□□□□□ -1.03
LIMCH1-203ENST00000396595 SCGB3A1Q96QR1 104 aa8.63□□□□□ -1.03
LIMCH1-203ENST00000396595 TRBV6-7A0A0A0MS04 114 aa8.63□□□□□ -1.03
LIMCH1-203ENST00000396595 PRSS47A8MTI9 375 aa8.63□□□□□ -1.03
LIMCH1-203ENST00000396595 GGTLC3B5MD39 225 aa8.63□□□□□ -1.03
LIMCH1-203ENST00000396595 B9A039 149 aa8.63□□□□□ -1.03
LIMCH1-203ENST00000396595 IFITM1P13164 125 aa8.63□□□□□ -1.03
LIMCH1-203ENST00000396595 FAM90A1Q86YD7 464 aa8.63□□□□□ -1.03
LIMCH1-203ENST00000396595 ZNF114Q8NC26 417 aa8.63□□□□□ -1.03
LIMCH1-203ENST00000396595 OR13A1Q8NGR1 328 aa8.63□□□□□ -1.03
LIMCH1-203ENST00000396595 YAE1D1Q9NRH1 226 aa8.63□□□□□ -1.03
LIMCH1-203ENST00000396595 TMEM74BQ9NUR3 256 aa8.63□□□□□ -1.03
LIMCH1-203ENST00000396595 ATAD5Q96QE3 1844 aa8.62□□□□□ -1.03
LIMCH1-203ENST00000396595 RFPL3SP0C7P2 107 aa8.62□□□□□ -1.03
LIMCH1-203ENST00000396595 TMEM258P61165 79 aa8.62□□□□□ -1.03
LIMCH1-203ENST00000396595 POU2AF1Q16633 256 aa8.62□□□□□ -1.03
LIMCH1-203ENST00000396595 TMEM144Q7Z5S9 345 aa8.62□□□□□ -1.03
LIMCH1-203ENST00000396595 HIST3H2BBQ8N257 126 aa8.62□□□□□ -1.03
LIMCH1-203ENST00000396595 NEUROG3Q9Y4Z2 214 aa8.62□□□□□ -1.03
LIMCH1-203ENST00000396595 DICER1Q9UPY3 1922 aaKnown RBP8.62□□□□□ -1.03
LIMCH1-203ENST00000396595 COL4A5P29400 1685 aa8.62□□□□□ -1.03
LIMCH1-203ENST00000396595 ESPL1Q14674 2120 aa8.62□□□□□ -1.03
LIMCH1-203ENST00000396595 TRAV24A0A0B4J272 114 aa8.62□□□□□ -1.03
LIMCH1-203ENST00000396595 H0YIZ8 118 aa8.62□□□□□ -1.03
LIMCH1-203ENST00000396595 CCL20P78556 96 aa8.62□□□□□ -1.03
LIMCH1-203ENST00000396595 FAM74A4Q5TZK3 123 aa8.62□□□□□ -1.03
LIMCH1-203ENST00000396595 SLC25A28Q96A46 364 aa8.62□□□□□ -1.03
LIMCH1-203ENST00000396595 HEATR5BQ9P2D3 2071 aa8.62□□□□□ -1.03
LIMCH1-203ENST00000396595 SCN2AQ99250 2005 aa8.62□□□□□ -1.03
LIMCH1-203ENST00000396595 H3BRM9 83 aa8.62□□□□□ -1.03
LIMCH1-203ENST00000396595 HIST1H2BKO60814 126 aa8.62□□□□□ -1.03
LIMCH1-203ENST00000396595 HIST1H2BJP06899 126 aa8.62□□□□□ -1.03
LIMCH1-203ENST00000396595 CECR9P0C854 216 aa8.62□□□□□ -1.03
LIMCH1-203ENST00000396595 HIST1H2BOP23527 126 aa8.62□□□□□ -1.03
LIMCH1-203ENST00000396595 HIST1H2BBP33778 126 aa8.62□□□□□ -1.03
LIMCH1-203ENST00000396595 HIST1H2BDP58876 126 aa8.62□□□□□ -1.03
LIMCH1-203ENST00000396595 HIST1H2BCP62807 126 aa8.62□□□□□ -1.03
LIMCH1-203ENST00000396595 HIST2H2BEQ16778 126 aa8.62□□□□□ -1.03
LIMCH1-203ENST00000396595 HIST2H2BFQ5QNW6 126 aaPredicted RBP8.62□□□□□ -1.03
LIMCH1-203ENST00000396595 WDR82Q6UXN9 313 aa8.62□□□□□ -1.03
LIMCH1-203ENST00000396595 DLX4Q92988 240 aaPredicted RBP8.62□□□□□ -1.03
LIMCH1-203ENST00000396595 HIST1H2BHQ93079 126 aa8.62□□□□□ -1.03
LIMCH1-203ENST00000396595 HIST1H2BNQ99877 126 aa8.62□□□□□ -1.03
LIMCH1-203ENST00000396595 HIST1H2BMQ99879 126 aa8.62□□□□□ -1.03
LIMCH1-203ENST00000396595 MS4A6AQ9H2W1 248 aa8.62□□□□□ -1.03
LIMCH1-203ENST00000396595 ANKRD36A6QL64 1941 aa8.62□□□□□ -1.03
LIMCH1-203ENST00000396595 CCL1P22362 96 aa8.61□□□□□ -1.03
LIMCH1-203ENST00000396595 ADMP35318 185 aa8.61□□□□□ -1.03
LIMCH1-203ENST00000396595 SNRPD3P62318 126 aaKnown RBP8.61□□□□□ -1.03
LIMCH1-203ENST00000396595 RSPO4Q2I0M5 234 aaPredicted RBP8.61□□□□□ -1.03
LIMCH1-203ENST00000396595 GAGE2AQ6NT46 116 aa8.61□□□□□ -1.03
LIMCH1-203ENST00000396595 FAM89BQ8N5H3 189 aa8.61□□□□□ -1.03
LIMCH1-203ENST00000396595 OR9G4Q8NGQ1 327 aa8.61□□□□□ -1.03
LIMCH1-203ENST00000396595 NAA38Q9BRA0 125 aaKnown RBP8.61□□□□□ -1.03
LIMCH1-203ENST00000396595 H7C1H1 209 aa8.61□□□□□ -1.03
LIMCH1-203ENST00000396595 J3QRE1 110 aa8.61□□□□□ -1.03
LIMCH1-203ENST00000396595 MIR17HGQ75NE6 70 aa8.61□□□□□ -1.03
LIMCH1-203ENST00000396595 RGPD3A6NKT7 1758 aaPredicted RBP8.61□□□□□ -1.03
LIMCH1-203ENST00000396595 COL11A1P12107 1806 aaPredicted RBP8.61□□□□□ -1.03
LIMCH1-203ENST00000396595 THSD7AQ9UPZ6 1657 aa8.61□□□□□ -1.03
LIMCH1-203ENST00000396595 LINC00271P0C7V0 271 aa8.61□□□□□ -1.03
LIMCH1-203ENST00000396595 GLRX5Q86SX6 157 aa8.61□□□□□ -1.03
LIMCH1-203ENST00000396595 ORMDL3Q8N138 153 aa8.61□□□□□ -1.03
LIMCH1-203ENST00000396595 SEPSECSQ9HD40 501 aaKnown RBP8.61□□□□□ -1.03
LIMCH1-203ENST00000396595 SLC25A20O43772 301 aa8.61□□□□□ -1.03
LIMCH1-203ENST00000396595 TBX6O95947 436 aaPredicted RBP8.61□□□□□ -1.03
LIMCH1-203ENST00000396595 ERVK11-1P61568 191 aa8.61□□□□□ -1.03
LIMCH1-203ENST00000396595 CFAP161Q6P656 301 aa8.61□□□□□ -1.03
LIMCH1-203ENST00000396595 DPM3Q9P2X0 92 aa8.61□□□□□ -1.03
LIMCH1-203ENST00000396595 ERG28Q9UKR5 140 aa8.61□□□□□ -1.03
LIMCH1-203ENST00000396595 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP8.61□□□□□ -1.03
LIMCH1-203ENST00000396595 MLNRO43193 412 aa8.61□□□□□ -1.03
LIMCH1-203ENST00000396595 CNTFRP26992 372 aa8.61□□□□□ -1.03
LIMCH1-203ENST00000396595 LYPD3O95274 346 aa8.6□□□□□ -1.03
LIMCH1-203ENST00000396595 ASIPP42127 132 aa8.6□□□□□ -1.03
LIMCH1-203ENST00000396595 ID3Q02535 119 aa8.6□□□□□ -1.03
LIMCH1-203ENST00000396595 OSTCQ9NRP0 149 aa8.6□□□□□ -1.03
LIMCH1-203ENST00000396595 FBXL15Q9H469 300 aa8.6□□□□□ -1.03
LIMCH1-203ENST00000396595 IGHV3OR16-12A0A075B7B8 117 aa8.6□□□□□ -1.03
LIMCH1-203ENST00000396595 IGHV3-35A0A0C4DH35 117 aa8.6□□□□□ -1.03
LIMCH1-203ENST00000396595 FOXH1O75593 365 aa8.6□□□□□ -1.03
LIMCH1-203ENST00000396595 UMODP07911 640 aa8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 101.9 ms