RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 SLC35E1Q96K37 410 aa10.67□□□□□ -0.7
HMGB1-202ENST00000339872 ACTR3CQ9C0K3 210 aaPredicted RBP10.67□□□□□ -0.7
HMGB1-202ENST00000339872 CHD6Q8TD26 2715 aa10.67□□□□□ -0.7
HMGB1-202ENST00000339872 SOX15O60248 233 aa10.67□□□□□ -0.7
HMGB1-202ENST00000339872 B2MP61769 119 aa10.67□□□□□ -0.7
HMGB1-202ENST00000339872 EBI3Q14213 229 aa10.67□□□□□ -0.7
HMGB1-202ENST00000339872 Q8N6K4 173 aa10.67□□□□□ -0.7
HMGB1-202ENST00000339872 ZNF114Q8NC26 417 aa10.67□□□□□ -0.7
HMGB1-202ENST00000339872 ABHD5Q8WTS1 349 aa10.67□□□□□ -0.7
HMGB1-202ENST00000339872 CACNG8Q8WXS5 425 aa10.67□□□□□ -0.7
HMGB1-202ENST00000339872 ACY3Q96HD9 319 aa10.67□□□□□ -0.7
HMGB1-202ENST00000339872 SEC11CQ9BY50 192 aa10.67□□□□□ -0.7
HMGB1-202ENST00000339872 FNDC4Q9H6D8 234 aaPredicted RBP10.67□□□□□ -0.7
HMGB1-202ENST00000339872 GNG13Q9P2W3 67 aa10.67□□□□□ -0.7
HMGB1-202ENST00000339872 ANKRD17O75179 2603 aaKnown RBP10.67□□□□□ -0.7
HMGB1-202ENST00000339872 IGKV1OR2-108A0A075B7D4 117 aa10.66□□□□□ -0.7
HMGB1-202ENST00000339872 CYB5BO43169 146 aa10.66□□□□□ -0.7
HMGB1-202ENST00000339872 YIF1AO95070 293 aa10.66□□□□□ -0.7
HMGB1-202ENST00000339872 FAM106CPP0CH98 169 aa10.66□□□□□ -0.7
HMGB1-202ENST00000339872 BRS3P32247 399 aa10.66□□□□□ -0.7
HMGB1-202ENST00000339872 GPX4P36969 197 aaPredicted RBP10.66□□□□□ -0.7
HMGB1-202ENST00000339872 CDC34P49427 236 aaPredicted RBP10.66□□□□□ -0.7
HMGB1-202ENST00000339872 FAM120AOSQ5T036 256 aa10.66□□□□□ -0.7
HMGB1-202ENST00000339872 STPG3Q8N7X2 389 aa10.66□□□□□ -0.7
HMGB1-202ENST00000339872 OR2T6Q8NHC8 308 aa10.66□□□□□ -0.7
HMGB1-202ENST00000339872 MISP3Q96FF7 219 aa10.66□□□□□ -0.7
HMGB1-202ENST00000339872 IGHV1-69DA0A0B4J2H0 117 aa10.66□□□□□ -0.7
HMGB1-202ENST00000339872 B4DSR2 109 aa10.66□□□□□ -0.7
HMGB1-202ENST00000339872 IGHV1-69P01742 117 aa10.66□□□□□ -0.7
HMGB1-202ENST00000339872 IGHV3-48P01763 117 aa10.66□□□□□ -0.7
HMGB1-202ENST00000339872 RAB24Q969Q5 203 aa10.66□□□□□ -0.7
HMGB1-202ENST00000339872 ZFP92A6NM28 416 aa10.65□□□□□ -0.7
HMGB1-202ENST00000339872 MFAP2P55001 183 aa10.65□□□□□ -0.7
HMGB1-202ENST00000339872 FXYD3Q14802 87 aa10.65□□□□□ -0.7
HMGB1-202ENST00000339872 GUCA2BQ16661 112 aa10.65□□□□□ -0.7
HMGB1-202ENST00000339872 C10orf91Q5T1B1 145 aa10.65□□□□□ -0.7
HMGB1-202ENST00000339872 BRD3OSQ6XYD6 125 aa10.65□□□□□ -0.7
HMGB1-202ENST00000339872 FAM103A1Q9BTL3 118 aaKnown RBP10.65□□□□□ -0.7
HMGB1-202ENST00000339872 C7orf69Q9H7B7 122 aa10.65□□□□□ -0.7
HMGB1-202ENST00000339872 HIF1ANQ9NWT6 349 aa10.65□□□□□ -0.7
HMGB1-202ENST00000339872 CARHSP1Q9Y2V2 147 aaKnown RBP10.65□□□□□ -0.7
HMGB1-202ENST00000339872 F11RQ9Y624 299 aaKnown RBP10.65□□□□□ -0.7
HMGB1-202ENST00000339872 USP9YO00507 2555 aaPredicted RBP10.65□□□□□ -0.71
HMGB1-202ENST00000339872 OR10J1P30954 320 aa10.64□□□□□ -0.71
HMGB1-202ENST00000339872 RPL29P47914 159 aaKnown RBP10.64□□□□□ -0.71
HMGB1-202ENST00000339872 OR1P1Q8NH06 330 aa10.64□□□□□ -0.71
HMGB1-202ENST00000339872 CELSR2Q9HCU4 2923 aa10.64□□□□□ -0.71
HMGB1-202ENST00000339872 SVEP1Q4LDE5 3571 aa10.64□□□□□ -0.71
HMGB1-202ENST00000339872 A0A1W2PPV4 95 aa10.64□□□□□ -0.71
HMGB1-202ENST00000339872 SEC14L6B5MCN3 397 aa10.64□□□□□ -0.71
HMGB1-202ENST00000339872 ICAM4Q14773 271 aa10.64□□□□□ -0.71
HMGB1-202ENST00000339872 DEFB113Q30KQ7 82 aa10.64□□□□□ -0.71
HMGB1-202ENST00000339872 ZNF506Q5JVG8 444 aa10.64□□□□□ -0.71
HMGB1-202ENST00000339872 ATRAIDQ6UW56 229 aa10.64□□□□□ -0.71
HMGB1-202ENST00000339872 IQCF2Q8IXL9 164 aa10.64□□□□□ -0.71
HMGB1-202ENST00000339872 SVBPQ8N300 66 aa10.64□□□□□ -0.71
HMGB1-202ENST00000339872 RXFP4Q8TDU9 374 aa10.64□□□□□ -0.71
HMGB1-202ENST00000339872 SRSF8Q9BRL6 282 aaKnown RBP10.64□□□□□ -0.71
HMGB1-202ENST00000339872 BEX4Q9NWD9 120 aaPredicted RBP10.64□□□□□ -0.71
HMGB1-202ENST00000339872 SLC45A2Q9UMX9 530 aa10.64□□□□□ -0.71
HMGB1-202ENST00000339872 LOC102723971A0A1B0GUV8 181 aa10.63□□□□□ -0.71
HMGB1-202ENST00000339872 IGHV4-38-2P0DP08 117 aa10.63□□□□□ -0.71
HMGB1-202ENST00000339872 PRR20EP86478 221 aa10.63□□□□□ -0.71
HMGB1-202ENST00000339872 PRR20CP86479 221 aa10.63□□□□□ -0.71
HMGB1-202ENST00000339872 PRR20DP86480 221 aa10.63□□□□□ -0.71
HMGB1-202ENST00000339872 PRR20BP86481 221 aa10.63□□□□□ -0.71
HMGB1-202ENST00000339872 PRR20AP86496 221 aa10.63□□□□□ -0.71
HMGB1-202ENST00000339872 PVRIGQ6DKI7 326 aa10.63□□□□□ -0.71
HMGB1-202ENST00000339872 NPIPB3Q92617 1050 aa10.63□□□□□ -0.71
HMGB1-202ENST00000339872 SLC35B3Q9H1N7 401 aa10.63□□□□□ -0.71
HMGB1-202ENST00000339872 TMPRSS5Q9H3S3 457 aa10.63□□□□□ -0.71
HMGB1-202ENST00000339872 SMDT1Q9H4I9 107 aa10.63□□□□□ -0.71
HMGB1-202ENST00000339872 A0A096LNT2 108 aa10.63□□□□□ -0.71
HMGB1-202ENST00000339872 CORTO00230 105 aa10.63□□□□□ -0.71
HMGB1-202ENST00000339872 BCL2P10415 239 aa10.63□□□□□ -0.71
HMGB1-202ENST00000339872 GATA2P23769 480 aaPredicted RBP10.63□□□□□ -0.71
HMGB1-202ENST00000339872 RND2P52198 227 aa10.63□□□□□ -0.71
HMGB1-202ENST00000339872 ETFRF1Q6IPR1 90 aa10.63□□□□□ -0.71
HMGB1-202ENST00000339872 ARPC1AQ92747 370 aa10.63□□□□□ -0.71
HMGB1-202ENST00000339872 C1RLQ9NZP8 487 aa10.63□□□□□ -0.71
HMGB1-202ENST00000339872 MRPL36Q9P0J6 103 aaKnown RBP10.63□□□□□ -0.71
HMGB1-202ENST00000339872 IGHV3-21A0A0B4J1V1 117 aa10.62□□□□□ -0.71
HMGB1-202ENST00000339872 TRAV20A0A0B4J274 112 aa10.62□□□□□ -0.71
HMGB1-202ENST00000339872 IFNA1P01562 189 aa10.62□□□□□ -0.71
HMGB1-202ENST00000339872 LINC00869P0C866 280 aa10.62□□□□□ -0.71
HMGB1-202ENST00000339872 CX3CL1P78423 397 aa10.62□□□□□ -0.71
HMGB1-202ENST00000339872 KHDC3LQ587J8 217 aa10.62□□□□□ -0.71
HMGB1-202ENST00000339872 ZNF562Q6V9R5 426 aa10.62□□□□□ -0.71
HMGB1-202ENST00000339872 Q8N9W7 124 aa10.62□□□□□ -0.71
HMGB1-202ENST00000339872 MAPK1IP1LQ8NDC0 245 aa10.62□□□□□ -0.71
HMGB1-202ENST00000339872 SLC25A33Q9BSK2 321 aa10.62□□□□□ -0.71
HMGB1-202ENST00000339872 DMRT1Q9Y5R6 373 aa10.62□□□□□ -0.71
HMGB1-202ENST00000339872 TENM4Q6N022 2769 aa10.62□□□□□ -0.71
HMGB1-202ENST00000339872 CEBPGP53567 150 aa10.62□□□□□ -0.71
HMGB1-202ENST00000339872 NDPQ00604 133 aa10.62□□□□□ -0.71
HMGB1-202ENST00000339872 LINC01356Q8N9X3 169 aa10.62□□□□□ -0.71
HMGB1-202ENST00000339872 NKX6-2Q9C056 277 aaPredicted RBP10.62□□□□□ -0.71
HMGB1-202ENST00000339872 WNT10AQ9GZT5 417 aa10.62□□□□□ -0.71
HMGB1-202ENST00000339872 DOPEY2Q9Y3R5 2298 aa10.62□□□□□ -0.71
HMGB1-202ENST00000339872 POLQO75417 2590 aa10.61□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 99.3 ms