RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 BMPR1BO00238 502 aa12.1□□□□□ -0.47
CLN3-201ENST00000333496 ARPC5O15511 151 aa12.1□□□□□ -0.47
CLN3-201ENST00000333496 SERPINE2P07093 398 aa12.1□□□□□ -0.47
CLN3-201ENST00000333496 SP6Q3SY56 376 aa12.1□□□□□ -0.47
CLN3-201ENST00000333496 C5orf66Q9H5L9 145 aa12.1□□□□□ -0.47
CLN3-201ENST00000333496 MED9Q9NWA0 146 aa12.1□□□□□ -0.47
CLN3-201ENST00000333496 S4R3C0 116 aa12.1□□□□□ -0.47
CLN3-201ENST00000333496 DNAH9Q9NYC9 4486 aa12.09□□□□□ -0.47
CLN3-201ENST00000333496 CFDP00746 253 aaPredicted RBP12.09□□□□□ -0.47
CLN3-201ENST00000333496 IGKV1-5P01602 117 aa12.09□□□□□ -0.47
CLN3-201ENST00000333496 DEFA4P12838 97 aa12.09□□□□□ -0.47
CLN3-201ENST00000333496 SYNJ2BPP57105 145 aa12.09□□□□□ -0.47
CLN3-201ENST00000333496 IZUMO4Q1ZYL8 232 aa12.09□□□□□ -0.47
CLN3-201ENST00000333496 IL34Q6ZMJ4 242 aa12.09□□□□□ -0.47
CLN3-201ENST00000333496 TMUB2Q71RG4 321 aa12.09□□□□□ -0.47
CLN3-201ENST00000333496 H2BFWTQ7Z2G1 175 aa12.09□□□□□ -0.47
CLN3-201ENST00000333496 CCDC71LQ8N9Z2 235 aa12.09□□□□□ -0.47
CLN3-201ENST00000333496 SCARB1Q8WTV0 552 aa12.09□□□□□ -0.47
CLN3-201ENST00000333496 CCDC140Q96MF4 163 aa12.09□□□□□ -0.47
CLN3-201ENST00000333496 PRR25Q96S07 402 aa12.09□□□□□ -0.47
CLN3-201ENST00000333496 ZMAT5Q9UDW3 170 aaKnown RBP12.09□□□□□ -0.47
CLN3-201ENST00000333496 PRNDQ9UKY0 176 aa12.09□□□□□ -0.47
CLN3-201ENST00000333496 FXYD6-FXYD2A0A087WZ82 144 aa12.08□□□□□ -0.48
CLN3-201ENST00000333496 IGHV3-23P01764 117 aa12.08□□□□□ -0.48
CLN3-201ENST00000333496 P0C879 139 aa12.08□□□□□ -0.48
CLN3-201ENST00000333496 OR13C7P0DN81 318 aa12.08□□□□□ -0.48
CLN3-201ENST00000333496 HIST1H1BP16401 226 aaKnown RBP12.08□□□□□ -0.48
CLN3-201ENST00000333496 UCP1P25874 307 aa12.08□□□□□ -0.48
CLN3-201ENST00000333496 UBE2MP61081 183 aaKnown RBP12.08□□□□□ -0.48
CLN3-201ENST00000333496 RPEL1Q2QD12 228 aa12.08□□□□□ -0.48
CLN3-201ENST00000333496 OR5B3Q8NH48 314 aa12.08□□□□□ -0.48
CLN3-201ENST00000333496 HINT2Q9BX68 163 aa12.08□□□□□ -0.48
CLN3-201ENST00000333496 FKBP11Q9NYL4 201 aa12.08□□□□□ -0.48
CLN3-201ENST00000333496 C14orf166Q9Y224 244 aaKnown RBP12.08□□□□□ -0.48
CLN3-201ENST00000333496 COL7A1Q02388 2944 aa12.08□□□□□ -0.48
CLN3-201ENST00000333496 MFSD2BA6NFX1 497 aa12.08□□□□□ -0.48
CLN3-201ENST00000333496 PPP5D1E7EU14 171 aa12.08□□□□□ -0.48
CLN3-201ENST00000333496 AKR1C4P17516 323 aa12.08□□□□□ -0.48
CLN3-201ENST00000333496 M6PRP20645 277 aa12.08□□□□□ -0.48
CLN3-201ENST00000333496 MFAP2P55001 183 aa12.08□□□□□ -0.48
CLN3-201ENST00000333496 DHRS2Q13268 280 aa12.08□□□□□ -0.48
CLN3-201ENST00000333496 PPP1R1AQ13522 171 aa12.08□□□□□ -0.48
CLN3-201ENST00000333496 DEFB121Q5J5C9 76 aa12.08□□□□□ -0.48
CLN3-201ENST00000333496 GSG1LQ6UXU4 331 aa12.08□□□□□ -0.48
CLN3-201ENST00000333496 OR9G4Q8NGQ1 327 aa12.08□□□□□ -0.48
CLN3-201ENST00000333496 LRRC20Q8TCA0 184 aa12.08□□□□□ -0.48
CLN3-201ENST00000333496 LSM10Q969L4 123 aaKnown RBP12.08□□□□□ -0.48
CLN3-201ENST00000333496 TMEM230Q96A57 120 aa12.08□□□□□ -0.48
CLN3-201ENST00000333496 ARL6Q9H0F7 186 aa12.08□□□□□ -0.48
CLN3-201ENST00000333496 ZNF256Q9Y2P7 627 aaPredicted RBP12.08□□□□□ -0.48
CLN3-201ENST00000333496 SIX6O95475 246 aa12.07□□□□□ -0.48
CLN3-201ENST00000333496 HLA-AP01891 365 aaKnown RBP12.07□□□□□ -0.48
CLN3-201ENST00000333496 OR5AC1P0C628 307 aa12.07□□□□□ -0.48
CLN3-201ENST00000333496 ZNF345Q14585 488 aa12.07□□□□□ -0.48
CLN3-201ENST00000333496 TMEM128Q5BJH2 165 aa12.07□□□□□ -0.48
CLN3-201ENST00000333496 CLEC19AQ6UXS0 136 aa12.07□□□□□ -0.48
CLN3-201ENST00000333496 HSD17B13Q7Z5P4 300 aaPredicted RBP12.07□□□□□ -0.48
CLN3-201ENST00000333496 LYG2Q86SG7 212 aa12.07□□□□□ -0.48
CLN3-201ENST00000333496 HAPLN4Q86UW8 402 aa12.07□□□□□ -0.48
CLN3-201ENST00000333496 OR4A16Q8NH70 328 aa12.07□□□□□ -0.48
CLN3-201ENST00000333496 GLYATL2Q8WU03 294 aa12.07□□□□□ -0.48
CLN3-201ENST00000333496 OR4C12Q96R67 309 aa12.07□□□□□ -0.48
CLN3-201ENST00000333496 LSM4Q9Y4Z0 139 aaKnown RBP12.07□□□□□ -0.48
CLN3-201ENST00000333496 A0A0D9SG52 128 aa12.06□□□□□ -0.48
CLN3-201ENST00000333496 A0A0G2JRQ6 117 aa12.06□□□□□ -0.48
CLN3-201ENST00000333496 C9orf170A2RU37 121 aa12.06□□□□□ -0.48
CLN3-201ENST00000333496 IGLV1-51P01701 117 aa12.06□□□□□ -0.48
CLN3-201ENST00000333496 SLC51BQ86UW2 128 aa12.06□□□□□ -0.48
CLN3-201ENST00000333496 LHFPL5Q8TAF8 219 aa12.06□□□□□ -0.48
CLN3-201ENST00000333496 SUN5Q8TC36 379 aa12.06□□□□□ -0.48
CLN3-201ENST00000333496 ELOVL1Q9BW60 279 aa12.06□□□□□ -0.48
CLN3-201ENST00000333496 TMEM222Q9H0R3 208 aa12.06□□□□□ -0.48
CLN3-201ENST00000333496 NAA60Q9H7X0 242 aa12.06□□□□□ -0.48
CLN3-201ENST00000333496 F11RQ9Y624 299 aaKnown RBP12.06□□□□□ -0.48
CLN3-201ENST00000333496 CRYM-AS1A6NIL9 109 aa12.05□□□□□ -0.48
CLN3-201ENST00000333496 CDS2O95674 445 aa12.05□□□□□ -0.48
CLN3-201ENST00000333496 CSN3P07498 182 aa12.05□□□□□ -0.48
CLN3-201ENST00000333496 SLC25A4P12235 298 aa12.05□□□□□ -0.48
CLN3-201ENST00000333496 VAMP1P23763 118 aa12.05□□□□□ -0.48
CLN3-201ENST00000333496 HSPE1P61604 102 aaKnown RBP12.05□□□□□ -0.48
CLN3-201ENST00000333496 FAM209BQ5JX69 171 aa12.05□□□□□ -0.48
CLN3-201ENST00000333496 RBPMSQ93062 196 aaKnown RBP12.05□□□□□ -0.48
CLN3-201ENST00000333496 EEF1AKMT3Q96AZ1 226 aa12.05□□□□□ -0.48
CLN3-201ENST00000333496 TMEM56Q96MV1 263 aa12.05□□□□□ -0.48
CLN3-201ENST00000333496 MFFQ9GZY8 342 aa12.05□□□□□ -0.48
CLN3-201ENST00000333496 TEX13DA0A0J9YY54 714 aaPredicted RBP12.04□□□□□ -0.48
CLN3-201ENST00000333496 OR2C1O95371 312 aa12.04□□□□□ -0.48
CLN3-201ENST00000333496 SFT2D2O95562 160 aa12.04□□□□□ -0.48
CLN3-201ENST00000333496 AKR1C2P52895 323 aa12.04□□□□□ -0.48
CLN3-201ENST00000333496 PRCDQ00LT1 54 aa12.04□□□□□ -0.48
CLN3-201ENST00000333496 SLC25A24Q6NUK1 477 aa12.04□□□□□ -0.48
CLN3-201ENST00000333496 ZNF502Q8TBZ5 544 aa12.04□□□□□ -0.48
CLN3-201ENST00000333496 MITD1Q8WV92 249 aa12.04□□□□□ -0.48
CLN3-201ENST00000333496 WDR89Q96FK6 387 aaPredicted RBP12.04□□□□□ -0.48
CLN3-201ENST00000333496 CXorf58Q96LI9 332 aa12.04□□□□□ -0.48
CLN3-201ENST00000333496 PFDN2Q9UHV9 154 aa12.04□□□□□ -0.48
CLN3-201ENST00000333496 TRAV14DV4A0A0A6YYC5 116 aa12.04□□□□□ -0.48
CLN3-201ENST00000333496 TRBV7-1A0A0A6YYK4 115 aa12.04□□□□□ -0.48
CLN3-201ENST00000333496 GGCTO75223 188 aaKnown RBP12.04□□□□□ -0.48
CLN3-201ENST00000333496 LY86O95711 162 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 198.5 ms