RNA–Protein interactions for RNA: ENST00000298281.8

PCF11-201, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCF11, Length 7,677 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-201ENST00000298281 FOCADQ5VW36 1801 aa10.25□□□□□ -0.77
PCF11-201ENST00000298281 NCR2O95944 276 aa10.25□□□□□ -0.77
PCF11-201ENST00000298281 EVI2AP22794 236 aa10.25□□□□□ -0.77
PCF11-201ENST00000298281 C1orf100Q5SVJ3 147 aa10.25□□□□□ -0.77
PCF11-201ENST00000298281 C1orf122Q6ZSJ8 110 aa10.25□□□□□ -0.77
PCF11-201ENST00000298281 ZNF826PQ6ZT77 177 aa10.25□□□□□ -0.77
PCF11-201ENST00000298281 GTF3AQ92664 365 aaKnown RBP10.25□□□□□ -0.77
PCF11-201ENST00000298281 MS4A3Q96HJ5 214 aa10.25□□□□□ -0.77
PCF11-201ENST00000298281 TRAV25A0A0B4J276 109 aa10.25□□□□□ -0.77
PCF11-201ENST00000298281 TRBV5-5A0A0J9YX44 114 aa10.25□□□□□ -0.77
PCF11-201ENST00000298281 NIT1Q86X76 327 aa10.25□□□□□ -0.77
PCF11-201ENST00000298281 TNFRSF6BO95407 300 aa10.25□□□□□ -0.77
PCF11-201ENST00000298281 TMEM54Q969K7 222 aa10.25□□□□□ -0.77
PCF11-201ENST00000298281 PRSS22Q9GZN4 317 aa10.25□□□□□ -0.77
PCF11-201ENST00000298281 ZNF257Q9Y2Q1 563 aa10.25□□□□□ -0.77
PCF11-201ENST00000298281 CNOT1A5YKK6 2376 aaKnown RBP10.25□□□□□ -0.77
PCF11-201ENST00000298281 TRPM7Q96QT4 1865 aa10.25□□□□□ -0.77
PCF11-201ENST00000298281 IGKV1D-42A0A075B6H8 117 aa10.25□□□□□ -0.77
PCF11-201ENST00000298281 PEBP1P30086 187 aaKnown RBP10.25□□□□□ -0.77
PCF11-201ENST00000298281 NANOS3P60323 173 aaKnown RBP10.25□□□□□ -0.77
PCF11-201ENST00000298281 DNAJC30Q96LL9 226 aa10.25□□□□□ -0.77
PCF11-201ENST00000298281 GRIFINA4D1Z8 144 aa10.24□□□□□ -0.77
PCF11-201ENST00000298281 NPIPB13A6NJU9 1138 aa10.24□□□□□ -0.77
PCF11-201ENST00000298281 MGST2Q99735 147 aa10.24□□□□□ -0.77
PCF11-201ENST00000298281 CITED1Q99966 193 aa10.24□□□□□ -0.77
PCF11-201ENST00000298281 C6orf226Q5I0X4 101 aa10.24□□□□□ -0.77
PCF11-201ENST00000298281 PATE3B3GLJ2 98 aa10.24□□□□□ -0.77
PCF11-201ENST00000298281 B9A039 149 aa10.24□□□□□ -0.77
PCF11-201ENST00000298281 GPX4P36969 197 aaPredicted RBP10.24□□□□□ -0.77
PCF11-201ENST00000298281 ZNF146Q15072 292 aa10.24□□□□□ -0.77
PCF11-201ENST00000298281 SCARF2Q96GP6 870 aaPredicted RBP10.24□□□□□ -0.77
PCF11-201ENST00000298281 PPP1R3EQ9H7J1 279 aa10.24□□□□□ -0.77
PCF11-201ENST00000298281 PCP4P48539 62 aa10.24□□□□□ -0.77
PCF11-201ENST00000298281 TNFRSF9Q07011 255 aa10.24□□□□□ -0.77
PCF11-201ENST00000298281 ZNF585BQ52M93 769 aa10.24□□□□□ -0.77
PCF11-201ENST00000298281 OSR1Q8TAX0 266 aaPredicted RBP10.24□□□□□ -0.77
PCF11-201ENST00000298281 ELOVL5Q9NYP7 299 aa10.24□□□□□ -0.77
PCF11-201ENST00000298281 PRR14LQ5THK1 2151 aa10.24□□□□□ -0.77
PCF11-201ENST00000298281 DPRXA6NFQ7 191 aa10.24□□□□□ -0.77
PCF11-201ENST00000298281 MARCH11A6NNE9 402 aa10.24□□□□□ -0.77
PCF11-201ENST00000298281 MEGF9Q9H1U4 602 aa10.24□□□□□ -0.77
PCF11-201ENST00000298281 FNDC4Q9H6D8 234 aaPredicted RBP10.24□□□□□ -0.77
PCF11-201ENST00000298281 SCTP09683 121 aa10.24□□□□□ -0.77
PCF11-201ENST00000298281 AGAP20933 346 aa10.24□□□□□ -0.77
PCF11-201ENST00000298281 CTAG1AP78358 180 aa10.24□□□□□ -0.77
PCF11-201ENST00000298281 ARPC1AQ92747 370 aa10.24□□□□□ -0.77
PCF11-201ENST00000298281 NABP2Q9BQ15 211 aa10.24□□□□□ -0.77
PCF11-201ENST00000298281 CBLN4Q9NTU7 201 aa10.24□□□□□ -0.77
PCF11-201ENST00000298281 DLL3Q9NYJ7 618 aa10.24□□□□□ -0.77
PCF11-201ENST00000298281 LIMS1P48059 325 aa10.23□□□□□ -0.77
PCF11-201ENST00000298281 ZNF79Q15937 498 aa10.23□□□□□ -0.77
PCF11-201ENST00000298281 NKAPP1Q8N9T2 125 aa10.23□□□□□ -0.77
PCF11-201ENST00000298281 GATAD1Q8WUU5 269 aa10.23□□□□□ -0.77
PCF11-201ENST00000298281 PGLYRP1O75594 196 aaPredicted RBP10.23□□□□□ -0.77
PCF11-201ENST00000298281 SELENOKQ9Y6D0 94 aa10.23□□□□□ -0.77
PCF11-201ENST00000298281 QSER1Q2KHR3 1735 aa10.23□□□□□ -0.77
PCF11-201ENST00000298281 UNC119Q13432 240 aa10.23□□□□□ -0.77
PCF11-201ENST00000298281 RSPO4Q2I0M5 234 aaPredicted RBP10.23□□□□□ -0.77
PCF11-201ENST00000298281 OCIAD2Q56VL3 154 aa10.23□□□□□ -0.77
PCF11-201ENST00000298281 MED12LQ86YW9 2145 aa10.23□□□□□ -0.77
PCF11-201ENST00000298281 TEX45Q8NA69 505 aa10.23□□□□□ -0.77
PCF11-201ENST00000298281 ZNF703Q9H7S9 590 aaPredicted RBP10.23□□□□□ -0.77
PCF11-201ENST00000298281 NPIPB3Q92617 1050 aa10.23□□□□□ -0.77
PCF11-201ENST00000298281 PTPRDP23468 1912 aa10.23□□□□□ -0.77
PCF11-201ENST00000298281 UCP3P55916 312 aa10.23□□□□□ -0.77
PCF11-201ENST00000298281 SHANK1Q9Y566 2161 aa10.23□□□□□ -0.77
PCF11-201ENST00000298281 TRAV8-1A0A0A6YYK1 113 aa10.23□□□□□ -0.77
PCF11-201ENST00000298281 DUTP33316 252 aaKnown RBP10.23□□□□□ -0.77
PCF11-201ENST00000298281 RUNX1Q01196 453 aa10.23□□□□□ -0.77
PCF11-201ENST00000298281 TCTEX1D4Q5JR98 221 aa10.23□□□□□ -0.77
PCF11-201ENST00000298281 CFHR5Q9BXR6 569 aa10.23□□□□□ -0.77
PCF11-201ENST00000298281 DTX4Q9Y2E6 619 aa10.23□□□□□ -0.77
PCF11-201ENST00000298281 FOXA3P55318 350 aaPredicted RBP10.22□□□□□ -0.77
PCF11-201ENST00000298281 CENPWQ5EE01 88 aa10.22□□□□□ -0.77
PCF11-201ENST00000298281 ZFAND6Q6FIF0 208 aa10.22□□□□□ -0.77
PCF11-201ENST00000298281 OR52E5Q8NH55 327 aa10.22□□□□□ -0.77
PCF11-201ENST00000298281 SMIM8Q96KF7 97 aa10.22□□□□□ -0.77
PCF11-201ENST00000298281 NDUFS8O00217 210 aa10.22□□□□□ -0.77
PCF11-201ENST00000298281 IGHV3-53P01767 116 aa10.22□□□□□ -0.77
PCF11-201ENST00000298281 APOBEC3AP31941 199 aaPredicted RBP10.22□□□□□ -0.77
PCF11-201ENST00000298281 FER1L6-AS1Q8NA97 138 aa10.22□□□□□ -0.77
PCF11-201ENST00000298281 SLC25A38Q96DW6 304 aa10.22□□□□□ -0.77
PCF11-201ENST00000298281 IGKV1D-16P01601 117 aa10.22□□□□□ -0.77
PCF11-201ENST00000298281 TMEM52Q8NDY8 209 aa10.22□□□□□ -0.77
PCF11-201ENST00000298281 FXYD7P58549 80 aa10.22□□□□□ -0.77
PCF11-201ENST00000298281 DEFB104AQ8WTQ1 72 aa10.22□□□□□ -0.77
PCF11-201ENST00000298281 GZMMP51124 257 aa10.22□□□□□ -0.77
PCF11-201ENST00000298281 PILRAQ9UKJ1 303 aa10.22□□□□□ -0.77
PCF11-201ENST00000298281 KLHDC2Q9Y2U9 406 aa10.22□□□□□ -0.77
PCF11-201ENST00000298281 MRPL52Q86TS9 123 aaKnown RBP10.22□□□□□ -0.77
PCF11-201ENST00000298281 AQP3Q92482 292 aa10.22□□□□□ -0.77
PCF11-201ENST00000298281 ZNF561-AS1K7EIQ3 104 aa10.22□□□□□ -0.77
PCF11-201ENST00000298281 HLA-DQB1P01920 261 aa10.22□□□□□ -0.77
PCF11-201ENST00000298281 LINC00587B1AMM8 73 aa10.21□□□□□ -0.77
PCF11-201ENST00000298281 IL11P20809 199 aa10.21□□□□□ -0.77
PCF11-201ENST00000298281 KLF14Q8TD94 323 aaPredicted RBP10.21□□□□□ -0.77
PCF11-201ENST00000298281 COL11A1P12107 1806 aaPredicted RBP10.21□□□□□ -0.77
PCF11-201ENST00000298281 PGPEP1LA6NFU8 196 aa10.21□□□□□ -0.77
PCF11-201ENST00000298281 CYB5R2Q6BCY4 276 aa10.21□□□□□ -0.77
PCF11-201ENST00000298281 CCL1P22362 96 aa10.21□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms