RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 ST6GALNAC3Q8NDV1 305 aa17.36■□□□□ 0.37
TRIM28-201ENST00000253024 ZNF503Q96F45 646 aa17.36■□□□□ 0.37
TRIM28-201ENST00000253024 A8MWP6 167 aa17.35■□□□□ 0.37
TRIM28-201ENST00000253024 GGTLC3B5MD39 225 aa17.35■□□□□ 0.37
TRIM28-201ENST00000253024 FCN3O75636 299 aa17.35■□□□□ 0.37
TRIM28-201ENST00000253024 RUSC1-AS1Q66K80 236 aa17.35■□□□□ 0.37
TRIM28-201ENST00000253024 CMTM2Q8TAZ6 248 aa17.35■□□□□ 0.37
TRIM28-201ENST00000253024 TBX15Q96SF7 602 aa17.35■□□□□ 0.37
TRIM28-201ENST00000253024 COMMD5Q9GZQ3 224 aa17.35■□□□□ 0.37
TRIM28-201ENST00000253024 RPL29P47914 159 aaKnown RBP17.35■□□□□ 0.37
TRIM28-201ENST00000253024 BATFQ16520 125 aa17.35■□□□□ 0.37
TRIM28-201ENST00000253024 C1orf185Q5T7R7 199 aa17.35■□□□□ 0.37
TRIM28-201ENST00000253024 RAB1CQ92928 201 aa17.35■□□□□ 0.37
TRIM28-201ENST00000253024 PAM16Q9Y3D7 125 aa17.35■□□□□ 0.37
TRIM28-201ENST00000253024 G0S2P27469 103 aa17.34■□□□□ 0.37
TRIM28-201ENST00000253024 TGIF2LXQ8IUE1 241 aa17.34■□□□□ 0.37
TRIM28-201ENST00000253024 OR10X1Q8NGY0 326 aa17.34■□□□□ 0.37
TRIM28-201ENST00000253024 TP53TG3Q9ULZ0 132 aa17.34■□□□□ 0.37
TRIM28-201ENST00000253024 MOSP00540 346 aa17.34■□□□□ 0.37
TRIM28-201ENST00000253024 RTL8BQ17RB0 113 aa17.34■□□□□ 0.37
TRIM28-201ENST00000253024 BLNKQ8WV28 456 aa17.34■□□□□ 0.37
TRIM28-201ENST00000253024 HSPB9Q9BQS6 159 aa17.34■□□□□ 0.37
TRIM28-201ENST00000253024 SAMD10Q9BYL1 202 aa17.34■□□□□ 0.37
TRIM28-201ENST00000253024 GSX1Q9H4S2 264 aaPredicted RBP17.34■□□□□ 0.37
TRIM28-201ENST00000253024 NAT8BQ9UHF3 227 aa17.34■□□□□ 0.37
TRIM28-201ENST00000253024 FOXA2Q9Y261 457 aaPredicted RBP17.34■□□□□ 0.37
TRIM28-201ENST00000253024 OR5G3P0C626 314 aa17.34■□□□□ 0.37
TRIM28-201ENST00000253024 CRISP2P16562 243 aa17.34■□□□□ 0.37
TRIM28-201ENST00000253024 BSPH1Q075Z2 132 aa17.34■□□□□ 0.37
TRIM28-201ENST00000253024 OR52E5Q8NH55 327 aa17.34■□□□□ 0.37
TRIM28-201ENST00000253024 VN1R17PQ8TDU5 208 aa17.34■□□□□ 0.37
TRIM28-201ENST00000253024 FAM168AQ92567 244 aa17.34■□□□□ 0.37
TRIM28-201ENST00000253024 MRPL36Q9P0J6 103 aaKnown RBP17.34■□□□□ 0.37
TRIM28-201ENST00000253024 PRR30Q53SZ7 412 aaPredicted RBP17.33■□□□□ 0.37
TRIM28-201ENST00000253024 RBMXL3Q8N7X1 1067 aaKnown RBP17.33■□□□□ 0.37
TRIM28-201ENST00000253024 OR5R1Q8NH85 324 aa17.33■□□□□ 0.37
TRIM28-201ENST00000253024 UPK2O00526 184 aa17.33■□□□□ 0.36
TRIM28-201ENST00000253024 ZNF705AQ6ZN79 300 aaPredicted RBP17.33■□□□□ 0.36
TRIM28-201ENST00000253024 ZNF439Q8NDP4 499 aa17.33■□□□□ 0.36
TRIM28-201ENST00000253024 NPIPB3Q92617 1050 aa17.33■□□□□ 0.36
TRIM28-201ENST00000253024 RNF114Q9Y508 228 aa17.33■□□□□ 0.36
TRIM28-201ENST00000253024 SLC25A17O43808 307 aa17.32■□□□□ 0.36
TRIM28-201ENST00000253024 PMCHP20382 165 aa17.32■□□□□ 0.36
TRIM28-201ENST00000253024 GNG5P63218 68 aa17.32■□□□□ 0.36
TRIM28-201ENST00000253024 LEMD1Q68G75 181 aa17.32■□□□□ 0.36
TRIM28-201ENST00000253024 ANKHD1Q8IWZ3 2542 aaKnown RBP17.32■□□□□ 0.36
TRIM28-201ENST00000253024 TNFSF4P23510 183 aa17.32■□□□□ 0.36
TRIM28-201ENST00000253024 PRR20EP86478 221 aa17.32■□□□□ 0.36
TRIM28-201ENST00000253024 PRR20CP86479 221 aa17.32■□□□□ 0.36
TRIM28-201ENST00000253024 PRR20DP86480 221 aa17.32■□□□□ 0.36
TRIM28-201ENST00000253024 PRR20BP86481 221 aa17.32■□□□□ 0.36
TRIM28-201ENST00000253024 PRR20AP86496 221 aa17.32■□□□□ 0.36
TRIM28-201ENST00000253024 ZNF788Q6ZQV5 615 aa17.32■□□□□ 0.36
TRIM28-201ENST00000253024 RPUSD1Q9UJJ7 312 aaKnown RBP17.32■□□□□ 0.36
TRIM28-201ENST00000253024 SLC45A2Q9UMX9 530 aa17.32■□□□□ 0.36
TRIM28-201ENST00000253024 POLR3KQ9Y2Y1 108 aaPredicted RBP17.32■□□□□ 0.36
TRIM28-201ENST00000253024 ORM2P19652 201 aa17.31■□□□□ 0.36
TRIM28-201ENST00000253024 UBE2L3P68036 154 aaKnown RBP17.31■□□□□ 0.36
TRIM28-201ENST00000253024 LCN2P80188 198 aa17.31■□□□□ 0.36
TRIM28-201ENST00000253024 ASCL2Q99929 193 aa17.31■□□□□ 0.36
TRIM28-201ENST00000253024 PTPRQQ9UMZ3 2332 aa17.31■□□□□ 0.36
TRIM28-201ENST00000253024 IGLV3-9A0A075B6K5 115 aa17.31■□□□□ 0.36
TRIM28-201ENST00000253024 DPRXA6NFQ7 191 aa17.31■□□□□ 0.36
TRIM28-201ENST00000253024 A8MXE2 369 aa17.31■□□□□ 0.36
TRIM28-201ENST00000253024 TYMSP04818 313 aa17.31■□□□□ 0.36
TRIM28-201ENST00000253024 KRTDAPP60985 99 aa17.31■□□□□ 0.36
TRIM28-201ENST00000253024 Q6ZWC4 215 aa17.31■□□□□ 0.36
TRIM28-201ENST00000253024 SAP30LQ9HAJ7 183 aa17.31■□□□□ 0.36
TRIM28-201ENST00000253024 LINC00310P59036 64 aa17.31■□□□□ 0.36
TRIM28-201ENST00000253024 FAM19A2Q8N3H0 131 aa17.31■□□□□ 0.36
TRIM28-201ENST00000253024 OR5AU1Q8NGC0 362 aa17.31■□□□□ 0.36
TRIM28-201ENST00000253024 IL19Q9UHD0 177 aa17.31■□□□□ 0.36
TRIM28-201ENST00000253024 TRGV8A0A0C4DH27 118 aa17.3■□□□□ 0.36
TRIM28-201ENST00000253024 PRCDQ00LT1 54 aa17.3■□□□□ 0.36
TRIM28-201ENST00000253024 FOXL1Q12952 345 aa17.3■□□□□ 0.36
TRIM28-201ENST00000253024 RPEL1Q2QD12 228 aa17.3■□□□□ 0.36
TRIM28-201ENST00000253024 TMEM200BQ69YZ2 307 aa17.3■□□□□ 0.36
TRIM28-201ENST00000253024 KIR3DL3Q8N743 410 aa17.3■□□□□ 0.36
TRIM28-201ENST00000253024 IL36BQ9NZH7 164 aa17.3■□□□□ 0.36
TRIM28-201ENST00000253024 NAGKQ9UJ70 344 aa17.3■□□□□ 0.36
TRIM28-201ENST00000253024 PRNDQ9UKY0 176 aa17.3■□□□□ 0.36
TRIM28-201ENST00000253024 KIR2DS2P43631 304 aa17.3■□□□□ 0.36
TRIM28-201ENST00000253024 RANP62826 216 aaKnown RBP17.3■□□□□ 0.36
TRIM28-201ENST00000253024 FNDC4Q9H6D8 234 aaPredicted RBP17.3■□□□□ 0.36
TRIM28-201ENST00000253024 A0A0G2JNJ9 132 aa17.29■□□□□ 0.36
TRIM28-201ENST00000253024 hADV38S2A0JD32 116 aa17.29■□□□□ 0.36
TRIM28-201ENST00000253024 MT-CO2P00403 227 aa17.29■□□□□ 0.36
TRIM28-201ENST00000253024 RNASE2P10153 161 aaKnown RBP17.29■□□□□ 0.36
TRIM28-201ENST00000253024 CD24P25063 80 aa17.29■□□□□ 0.36
TRIM28-201ENST00000253024 CNTFRP26992 372 aa17.29■□□□□ 0.36
TRIM28-201ENST00000253024 TMPRSS3P57727 454 aa17.29■□□□□ 0.36
TRIM28-201ENST00000253024 COA6Q5JTJ3 125 aaKnown RBP17.29■□□□□ 0.36
TRIM28-201ENST00000253024 CYB5R2Q6BCY4 276 aa17.29■□□□□ 0.36
TRIM28-201ENST00000253024 SLC25A48Q6ZT89 311 aaKnown RBP17.29■□□□□ 0.36
TRIM28-201ENST00000253024 Q9UFV3 132 aa17.29■□□□□ 0.36
TRIM28-201ENST00000253024 WT1-ASQ06250 92 aa17.29■□□□□ 0.36
TRIM28-201ENST00000253024 IQCJQ1A5X6 159 aa17.29■□□□□ 0.36
TRIM28-201ENST00000253024 RNASEH2CQ8TDP1 164 aaKnown RBP17.29■□□□□ 0.36
TRIM28-201ENST00000253024 RCHY1Q96PM5 261 aa17.29■□□□□ 0.36
TRIM28-201ENST00000253024 NTF3P20783 257 aa17.28■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms