RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 GUCA2BQ16661 112 aa11.18□□□□□ -0.62
LDLR-201ENST00000252444 SIGLEC9Q9Y336 463 aa11.18□□□□□ -0.62
LDLR-201ENST00000252444 URGCP-MRPS24S4R325 110 aa11.18□□□□□ -0.62
LDLR-201ENST00000252444 PCDH15Q96QU1 1955 aa11.18□□□□□ -0.62
LDLR-201ENST00000252444 IGHV2-5P01817 119 aa11.18□□□□□ -0.62
LDLR-201ENST00000252444 FHITP49789 147 aa11.18□□□□□ -0.62
LDLR-201ENST00000252444 VKORC1L1Q8N0U8 176 aa11.18□□□□□ -0.62
LDLR-201ENST00000252444 MS4A10Q96PG2 267 aa11.18□□□□□ -0.62
LDLR-201ENST00000252444 RUNX1Q01196 453 aa11.18□□□□□ -0.62
LDLR-201ENST00000252444 RPRMLQ8N4K4 120 aa11.18□□□□□ -0.62
LDLR-201ENST00000252444 KCNS1Q96KK3 526 aa11.18□□□□□ -0.62
LDLR-201ENST00000252444 ARID1BQ8NFD5 2236 aaPredicted RBP11.18□□□□□ -0.62
LDLR-201ENST00000252444 ADAMTS9Q9P2N4 1935 aa11.18□□□□□ -0.62
LDLR-201ENST00000252444 SRD5A1P18405 259 aa11.17□□□□□ -0.62
LDLR-201ENST00000252444 RHOGP84095 191 aa11.17□□□□□ -0.62
LDLR-201ENST00000252444 RELBQ01201 579 aa11.17□□□□□ -0.62
LDLR-201ENST00000252444 ZNF562Q6V9R5 426 aa11.17□□□□□ -0.62
LDLR-201ENST00000252444 MBD3L1Q8WWY6 194 aa11.17□□□□□ -0.62
LDLR-201ENST00000252444 ZNF524Q96C55 264 aa11.17□□□□□ -0.62
LDLR-201ENST00000252444 RNF125Q96EQ8 232 aa11.17□□□□□ -0.62
LDLR-201ENST00000252444 AHCTF1Q8WYP5 2266 aa11.17□□□□□ -0.62
LDLR-201ENST00000252444 DEFB113Q30KQ7 82 aa11.17□□□□□ -0.62
LDLR-201ENST00000252444 OR5AN1Q8NGI8 311 aa11.17□□□□□ -0.62
LDLR-201ENST00000252444 RNF166Q96A37 237 aaPredicted RBP11.17□□□□□ -0.62
LDLR-201ENST00000252444 H7C1H1 209 aa11.17□□□□□ -0.62
LDLR-201ENST00000252444 NBEAP1P0C6P0 100 aa11.17□□□□□ -0.62
LDLR-201ENST00000252444 PRNTQ86SH4 94 aa11.17□□□□□ -0.62
LDLR-201ENST00000252444 ATP6V0BQ99437 205 aa11.17□□□□□ -0.62
LDLR-201ENST00000252444 LYNX1G3V0Z9 82 aa11.17□□□□□ -0.62
LDLR-201ENST00000252444 TCAPO15273 167 aa11.17□□□□□ -0.62
LDLR-201ENST00000252444 SNCGO76070 127 aa11.17□□□□□ -0.62
LDLR-201ENST00000252444 NDUFB8O95169 186 aa11.17□□□□□ -0.62
LDLR-201ENST00000252444 LYNX1P0DP58 116 aa11.17□□□□□ -0.62
LDLR-201ENST00000252444 PMCHP20382 165 aa11.17□□□□□ -0.62
LDLR-201ENST00000252444 EAF1Q96JC9 268 aaPredicted RBP11.17□□□□□ -0.62
LDLR-201ENST00000252444 ASCL2Q99929 193 aa11.17□□□□□ -0.62
LDLR-201ENST00000252444 A0A1B0GUS0 222 aa11.16□□□□□ -0.62
LDLR-201ENST00000252444 GCGP01275 180 aa11.16□□□□□ -0.62
LDLR-201ENST00000252444 IBA57Q5T440 356 aaKnown RBP11.16□□□□□ -0.62
LDLR-201ENST00000252444 ZFP30Q9Y2G7 519 aa11.16□□□□□ -0.62
LDLR-201ENST00000252444 IGKV1D-8A0A087WSZ0 117 aa11.16□□□□□ -0.62
LDLR-201ENST00000252444 PSMG4Q5JS54 123 aa11.16□□□□□ -0.62
LDLR-201ENST00000252444 Q8NA96 180 aa11.16□□□□□ -0.62
LDLR-201ENST00000252444 NPIPB5A8MRT5 1133 aa11.16□□□□□ -0.62
LDLR-201ENST00000252444 RCC1LQ96I51 464 aaKnown RBP11.16□□□□□ -0.62
LDLR-201ENST00000252444 TRAV14DV4A0A0A6YYC5 116 aa11.16□□□□□ -0.62
LDLR-201ENST00000252444 CD99P14209 185 aa11.16□□□□□ -0.62
LDLR-201ENST00000252444 NTF4P34130 210 aa11.16□□□□□ -0.62
LDLR-201ENST00000252444 PAX8Q06710 450 aa11.16□□□□□ -0.62
LDLR-201ENST00000252444 C5orf63A6NC05 138 aa11.16□□□□□ -0.62
LDLR-201ENST00000252444 RNF222A6NCQ9 220 aa11.16□□□□□ -0.62
LDLR-201ENST00000252444 LINC01549A6NIU2 74 aa11.16□□□□□ -0.62
LDLR-201ENST00000252444 CLEC9AQ6UXN8 241 aa11.16□□□□□ -0.62
LDLR-201ENST00000252444 OR11H6Q8NGC7 330 aa11.16□□□□□ -0.62
LDLR-201ENST00000252444 PRSS3P2Q8NHM4 247 aa11.16□□□□□ -0.62
LDLR-201ENST00000252444 MCRIP2Q9BUT9 160 aaKnown RBP11.16□□□□□ -0.62
LDLR-201ENST00000252444 NAGKQ9UJ70 344 aa11.16□□□□□ -0.62
LDLR-201ENST00000252444 AMBPP02760 352 aa11.15□□□□□ -0.62
LDLR-201ENST00000252444 ZNF383Q8NA42 475 aa11.15□□□□□ -0.62
LDLR-201ENST00000252444 FOXI3A8MTJ6 420 aaPredicted RBP11.15□□□□□ -0.62
LDLR-201ENST00000252444 F5H697 171 aa11.15□□□□□ -0.62
LDLR-201ENST00000252444 C15orf65H3BRN8 121 aa11.15□□□□□ -0.62
LDLR-201ENST00000252444 TOMM40O96008 361 aa11.15□□□□□ -0.62
LDLR-201ENST00000252444 IGFBP2P18065 325 aa11.15□□□□□ -0.62
LDLR-201ENST00000252444 RRN3P1Q2M238 152 aa11.15□□□□□ -0.62
LDLR-201ENST00000252444 WDR86Q86TI4 376 aa11.15□□□□□ -0.62
LDLR-201ENST00000252444 OR2D3Q8NGH3 330 aa11.15□□□□□ -0.62
LDLR-201ENST00000252444 C7orf77A4D0Y5 90 aa11.15□□□□□ -0.62
LDLR-201ENST00000252444 SPANXN1Q5VSR9 72 aa11.15□□□□□ -0.62
LDLR-201ENST00000252444 RNF126Q9BV68 326 aa11.15□□□□□ -0.62
LDLR-201ENST00000252444 HSPB8Q9UJY1 196 aa11.15□□□□□ -0.62
LDLR-201ENST00000252444 ZNF503-AS2A6NEH8 195 aa11.15□□□□□ -0.63
LDLR-201ENST00000252444 NPIPB6E9PJ23 425 aa11.15□□□□□ -0.63
LDLR-201ENST00000252444 REG1AP05451 166 aa11.15□□□□□ -0.63
LDLR-201ENST00000252444 ZNF343Q6P1L6 599 aa11.15□□□□□ -0.63
LDLR-201ENST00000252444 SMIM12Q96EX1 92 aa11.15□□□□□ -0.63
LDLR-201ENST00000252444 GPR183P32249 361 aa11.14□□□□□ -0.63
LDLR-201ENST00000252444 ZNF137PP52743 207 aa11.14□□□□□ -0.63
LDLR-201ENST00000252444 C17orf58Q2M2W7 97 aa11.14□□□□□ -0.63
LDLR-201ENST00000252444 LYPD2Q6UXB3 125 aa11.14□□□□□ -0.63
LDLR-201ENST00000252444 A0A0B4J293 547 aa11.14□□□□□ -0.63
LDLR-201ENST00000252444 C9orf139Q6ZV77 190 aa11.14□□□□□ -0.63
LDLR-201ENST00000252444 IGHV3OR16-10A0A075B7F0 116 aa11.14□□□□□ -0.63
LDLR-201ENST00000252444 A0A087WWC5 75 aa11.14□□□□□ -0.63
LDLR-201ENST00000252444 RAMP3O60896 148 aa11.14□□□□□ -0.63
LDLR-201ENST00000252444 AMY1AP04745 511 aa11.14□□□□□ -0.63
LDLR-201ENST00000252444 HERVK_113P61574 105 aa11.14□□□□□ -0.63
LDLR-201ENST00000252444 ZCCHC24Q8N2G6 241 aaKnown RBP11.14□□□□□ -0.63
LDLR-201ENST00000252444 LY96Q9Y6Y9 160 aa11.14□□□□□ -0.63
LDLR-201ENST00000252444 APCSP02743 223 aa11.14□□□□□ -0.63
LDLR-201ENST00000252444 SUPT4H1P63272 117 aaKnown RBP11.14□□□□□ -0.63
LDLR-201ENST00000252444 CX3CL1P78423 397 aa11.14□□□□□ -0.63
LDLR-201ENST00000252444 PEX7O00628 323 aa11.13□□□□□ -0.63
LDLR-201ENST00000252444 SAA4P35542 130 aa11.13□□□□□ -0.63
LDLR-201ENST00000252444 CLEC19AQ6UXS0 136 aa11.13□□□□□ -0.63
LDLR-201ENST00000252444 NEUROG1Q92886 237 aa11.13□□□□□ -0.63
LDLR-201ENST00000252444 IGHV3-21A0A0B4J1V1 117 aa11.13□□□□□ -0.63
LDLR-201ENST00000252444 TMEM89A2RUT3 159 aa11.13□□□□□ -0.63
LDLR-201ENST00000252444 PLAUP00749 431 aa11.13□□□□□ -0.63
LDLR-201ENST00000252444 YPEL3P61236 119 aaPredicted RBP11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 85.5 ms