RNA–Protein interactions for RNA: ENST00000224237.9

VIM-201, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIM, Length 1,868 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-201ENST00000224237 RAB2AP61019 212 aa14.45□□□□□ -0.1
VIM-201ENST00000224237 FFAR4Q5NUL3 377 aa14.45□□□□□ -0.1
VIM-201ENST00000224237 RUSC1-AS1Q66K80 236 aa14.45□□□□□ -0.1
VIM-201ENST00000224237 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP14.45□□□□□ -0.11e-6■■■■■ 28.8
VIM-201ENST00000224237 MGST2Q99735 147 aa14.45□□□□□ -0.1
VIM-201ENST00000224237 UNC79Q9P2D8 2635 aa14.44□□□□□ -0.1
VIM-201ENST00000224237 RNF223E7ERA6 249 aa14.44□□□□□ -0.1
VIM-201ENST00000224237 REG1AP05451 166 aa14.44□□□□□ -0.1
VIM-201ENST00000224237 ADCYAP1P18509 176 aa14.44□□□□□ -0.1
VIM-201ENST00000224237 OPRK1P41145 380 aa14.44□□□□□ -0.1
VIM-201ENST00000224237 RAB31Q13636 194 aa14.44□□□□□ -0.1
VIM-201ENST00000224237 TMEM144Q7Z5S9 345 aa14.44□□□□□ -0.1
VIM-201ENST00000224237 SFT2D1Q8WV19 159 aa14.44□□□□□ -0.1
VIM-201ENST00000224237 GGTLC1Q9BX51 225 aa14.44□□□□□ -0.1
VIM-201ENST00000224237 AREGP15514 252 aa14.44□□□□□ -0.1
VIM-201ENST00000224237 PVRIGQ6DKI7 326 aa14.44□□□□□ -0.1
VIM-201ENST00000224237 PRSS57Q6UWY2 283 aa14.44□□□□□ -0.1
VIM-201ENST00000224237 SLC16A13Q7RTY0 426 aa14.44□□□□□ -0.1
VIM-201ENST00000224237 OR1P1Q8NH06 330 aa14.44□□□□□ -0.1
VIM-201ENST00000224237 SSMEM1Q8WWF3 244 aa14.44□□□□□ -0.1
VIM-201ENST00000224237 TRAV1-1A0A0B4J248 108 aa14.43□□□□□ -0.1
VIM-201ENST00000224237 IGHV4-38-2P0DP08 117 aa14.43□□□□□ -0.1
VIM-201ENST00000224237 GAMTQ14353 236 aa14.43□□□□□ -0.1
VIM-201ENST00000224237 FXYD3Q14802 87 aa14.43□□□□□ -0.1
VIM-201ENST00000224237 FAM120AOSQ5T036 256 aa14.43□□□□□ -0.1
VIM-201ENST00000224237 SPSB3Q6PJ21 355 aa14.43□□□□□ -0.1
VIM-201ENST00000224237 ZNF562Q6V9R5 426 aa14.43□□□□□ -0.1
VIM-201ENST00000224237 BRD3OSQ6XYD6 125 aa14.43□□□□□ -0.1
VIM-201ENST00000224237 KRTAP1-3Q8IUG1 177 aa14.43□□□□□ -0.1
VIM-201ENST00000224237 RCC1LQ96I51 464 aaKnown RBP14.43□□□□□ -0.1
VIM-201ENST00000224237 SLC35E1Q96K37 410 aa14.43□□□□□ -0.1
VIM-201ENST00000224237 HECTD1Q9ULT8 2610 aa14.43□□□□□ -0.1
VIM-201ENST00000224237 NAV3Q8IVL0 2385 aa14.42□□□□□ -0.1
VIM-201ENST00000224237 A0A1B0GV50 99 aa14.42□□□□□ -0.1
VIM-201ENST00000224237 CORTO00230 105 aa14.42□□□□□ -0.1
VIM-201ENST00000224237 APELAP0DMC3 54 aa14.42□□□□□ -0.1
VIM-201ENST00000224237 ACOT6Q3I5F7 207 aaPredicted RBP14.42□□□□□ -0.1
VIM-201ENST00000224237 RPP25LQ8N5L8 163 aaKnown RBP14.42□□□□□ -0.1
VIM-201ENST00000224237 OR10G4Q8NGN3 311 aa14.42□□□□□ -0.1
VIM-201ENST00000224237 OR10G9Q8NGN4 311 aa14.42□□□□□ -0.1
VIM-201ENST00000224237 OR10G7Q8NGN6 311 aa14.42□□□□□ -0.1
VIM-201ENST00000224237 ABHD5Q8WTS1 349 aa14.42□□□□□ -0.1
VIM-201ENST00000224237 MBD3L1Q8WWY6 194 aa14.42□□□□□ -0.1
VIM-201ENST00000224237 TMEM231Q9H6L2 316 aa14.42□□□□□ -0.1
VIM-201ENST00000224237 F11RQ9Y624 299 aaKnown RBP14.42□□□□□ -0.1
VIM-201ENST00000224237 ITPR2Q14571 2701 aa14.42□□□□□ -0.1
VIM-201ENST00000224237 SNAPINO95295 136 aa14.42□□□□□ -0.1
VIM-201ENST00000224237 ZNF726P1Q15940 193 aa14.42□□□□□ -0.1
VIM-201ENST00000224237 ETFRF1Q6IPR1 90 aa14.42□□□□□ -0.1
VIM-201ENST00000224237 PBDC1Q9BVG4 233 aa14.42□□□□□ -0.1
VIM-201ENST00000224237 MEGF9Q9H1U4 602 aa14.42□□□□□ -0.1
VIM-201ENST00000224237 FAM96BQ9Y3D0 163 aa14.42□□□□□ -0.1
VIM-201ENST00000224237 PXMP4Q9Y6I8 212 aa14.42□□□□□ -0.1
VIM-201ENST00000224237 CR1P17927 2039 aa14.41□□□□□ -0.1
VIM-201ENST00000224237 CCDC168Q8NDH2 2452 aa14.41□□□□□ -0.1
VIM-201ENST00000224237 J3QLI3 93 aa14.41□□□□□ -0.1
VIM-201ENST00000224237 DNASE2O00115 360 aaPredicted RBP14.41□□□□□ -0.1
VIM-201ENST00000224237 TSPAN4O14817 238 aa14.41□□□□□ -0.1
VIM-201ENST00000224237 PEA15Q15121 130 aa14.41□□□□□ -0.1
VIM-201ENST00000224237 Q8N9W7 124 aa14.41□□□□□ -0.1
VIM-201ENST00000224237 Q96MF0 132 aa14.41□□□□□ -0.1
VIM-201ENST00000224237 RPL29P47914 159 aaKnown RBP14.4□□□□□ -0.1
VIM-201ENST00000224237 MLANAQ16655 118 aa14.4□□□□□ -0.1
VIM-201ENST00000224237 GUCA2BQ16661 112 aa14.4□□□□□ -0.1
VIM-201ENST00000224237 GUK1Q16774 197 aa14.4□□□□□ -0.1
VIM-201ENST00000224237 ARPC1AQ92747 370 aa14.4□□□□□ -0.1
VIM-201ENST00000224237 ACTR3CQ9C0K3 210 aaPredicted RBP14.4□□□□□ -0.1
VIM-201ENST00000224237 FNDC4Q9H6D8 234 aaPredicted RBP14.4□□□□□ -0.1
VIM-201ENST00000224237 CREBBPQ92793 2442 aa14.4□□□□□ -0.1
VIM-201ENST00000224237 PDZD2O15018 2839 aa14.4□□□□□ -0.1
VIM-201ENST00000224237 A0A0U1RQK1 487 aa14.4□□□□□ -0.1
VIM-201ENST00000224237 CTXND1A0A1B0GTU2 59 aa14.4□□□□□ -0.1
VIM-201ENST00000224237 CYB5BO43169 146 aa14.4□□□□□ -0.1
VIM-201ENST00000224237 TSPAN9O75954 239 aa14.4□□□□□ -0.1
VIM-201ENST00000224237 B2MP61769 119 aa14.4□□□□□ -0.1
VIM-201ENST00000224237 CX3CL1P78423 397 aa14.4□□□□□ -0.1
VIM-201ENST00000224237 MIC13Q5XKP0 118 aa14.4□□□□□ -0.1
VIM-201ENST00000224237 SSX7Q7RTT5 188 aa14.4□□□□□ -0.1
VIM-201ENST00000224237 EIF5A2Q9GZV4 153 aaKnown RBP14.4□□□□□ -0.1
VIM-201ENST00000224237 SMDT1Q9H4I9 107 aa14.4□□□□□ -0.1
VIM-201ENST00000224237 SLC39A9Q9NUM3 307 aa14.4□□□□□ -0.1
VIM-201ENST00000224237 PRRC2AP48634 2157 aaKnown RBP14.39□□□□□ -0.11
VIM-201ENST00000224237 MAP1LC3B2A6NCE7 125 aa14.39□□□□□ -0.11
VIM-201ENST00000224237 TGFAP01135 160 aa14.39□□□□□ -0.11
VIM-201ENST00000224237 AVPP01185 164 aa14.39□□□□□ -0.11
VIM-201ENST00000224237 HLA-DRB1P01911 266 aa14.39□□□□□ -0.11
VIM-201ENST00000224237 SFTA3P0C7M3 94 aa14.39□□□□□ -0.11
VIM-201ENST00000224237 CTRB1P17538 263 aa14.39□□□□□ -0.11
VIM-201ENST00000224237 MFAP2P55001 183 aa14.39□□□□□ -0.11
VIM-201ENST00000224237 CCL20P78556 96 aa14.39□□□□□ -0.11
VIM-201ENST00000224237 CTRB2Q6GPI1 263 aa14.39□□□□□ -0.11
VIM-201ENST00000224237 LCN15Q6UWW0 184 aa14.39□□□□□ -0.11
VIM-201ENST00000224237 STPG3Q8N7X2 389 aa14.39□□□□□ -0.11
VIM-201ENST00000224237 OR1L6Q8NGR2 347 aa14.39□□□□□ -0.11
VIM-201ENST00000224237 MISP3Q96FF7 219 aa14.39□□□□□ -0.11
VIM-201ENST00000224237 ACY3Q96HD9 319 aa14.39□□□□□ -0.11
VIM-201ENST00000224237 RASL11BQ9BPW5 248 aa14.39□□□□□ -0.11
VIM-201ENST00000224237 MAP1LC3BQ9GZQ8 125 aa14.39□□□□□ -0.11
VIM-201ENST00000224237 SLC25A22Q9H936 323 aa14.39□□□□□ -0.11
VIM-201ENST00000224237 ABCA1O95477 2261 aa14.38□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms