RNA–Protein interactions for RNA: ENST00000597901.1

LIG1-215, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-215ENST00000597901 OR11H12B2RN74 326 aa11.33□□□□□ -0.6
LIG1-215ENST00000597901 TBPP20226 339 aa11.33□□□□□ -0.6
LIG1-215ENST00000597901 ELLP55199 621 aaPredicted RBP11.33□□□□□ -0.6
LIG1-215ENST00000597901 PIGPP57054 158 aa11.33□□□□□ -0.6
LIG1-215ENST00000597901 HSPE1P61604 102 aaKnown RBP11.33□□□□□ -0.6
LIG1-215ENST00000597901 CLVS1Q8IUQ0 354 aaPredicted RBP11.33□□□□□ -0.6
LIG1-215ENST00000597901 TMEM61Q8N0U2 210 aa11.33□□□□□ -0.6
LIG1-215ENST00000597901 OR4D10Q8NGI6 311 aa11.33□□□□□ -0.6
LIG1-215ENST00000597901 TERB2Q8NHR7 220 aa11.33□□□□□ -0.6
LIG1-215ENST00000597901 MARC2Q969Z3 335 aa11.33□□□□□ -0.6
LIG1-215ENST00000597901 MRGPRFQ96AM1 343 aa11.33□□□□□ -0.6
LIG1-215ENST00000597901 SPATA25Q9BR10 227 aa11.33□□□□□ -0.6
LIG1-215ENST00000597901 C21orf62Q9NYP8 219 aa11.33□□□□□ -0.6
LIG1-215ENST00000597901 UFC1Q9Y3C8 167 aa11.33□□□□□ -0.6
LIG1-215ENST00000597901 RBMY1BA6NDE4 496 aaKnown RBP11.32□□□□□ -0.6
LIG1-215ENST00000597901 RBMY1EA6NEQ0 496 aaKnown RBP11.32□□□□□ -0.6
LIG1-215ENST00000597901 GABARAPH6UMI1 98 aa11.32□□□□□ -0.6
LIG1-215ENST00000597901 K7EIM0 57 aa11.32□□□□□ -0.6
LIG1-215ENST00000597901 RGS5O15539 181 aa11.32□□□□□ -0.6
LIG1-215ENST00000597901 RAB3DO95716 219 aa11.32□□□□□ -0.6
LIG1-215ENST00000597901 CD74P04233 296 aa11.32□□□□□ -0.6
LIG1-215ENST00000597901 RBMY1DP0C7P1 496 aaKnown RBP11.32□□□□□ -0.6
LIG1-215ENST00000597901 LYL1P12980 280 aa11.32□□□□□ -0.6
LIG1-215ENST00000597901 OR2C3Q8N628 320 aa11.32□□□□□ -0.6
LIG1-215ENST00000597901 OR1P1Q8NH06 330 aa11.32□□□□□ -0.6
LIG1-215ENST00000597901 ZFAND1Q8TCF1 268 aa11.32□□□□□ -0.6
LIG1-215ENST00000597901 BSCL2Q96G97 398 aaPredicted RBP11.32□□□□□ -0.6
LIG1-215ENST00000597901 ATP6V0BQ99437 205 aa11.32□□□□□ -0.6
LIG1-215ENST00000597901 CHRDL1Q9BU40 450 aa11.32□□□□□ -0.6
LIG1-215ENST00000597901 TRAV25A0A0B4J276 109 aa11.31□□□□□ -0.6
LIG1-215ENST00000597901 C3orf85A0A1B0GTC6 90 aa11.31□□□□□ -0.6
LIG1-215ENST00000597901 F8W735 103 aaPredicted RBP11.31□□□□□ -0.6
LIG1-215ENST00000597901 SCAF4O95104 1147 aaKnown RBP11.31□□□□□ -0.6
LIG1-215ENST00000597901 ADMP35318 185 aa11.31□□□□□ -0.6
LIG1-215ENST00000597901 TAS2R19P59542 299 aa11.31□□□□□ -0.6
LIG1-215ENST00000597901 IZUMO4Q1ZYL8 232 aa11.31□□□□□ -0.6
LIG1-215ENST00000597901 CASC10Q5T4H9 136 aa11.31□□□□□ -0.6
LIG1-215ENST00000597901 STEAP1BQ6NZ63 245 aa11.31□□□□□ -0.6
LIG1-215ENST00000597901 SPSB3Q6PJ21 355 aa11.31□□□□□ -0.6
LIG1-215ENST00000597901 BTNL8Q6UX41 500 aa11.31□□□□□ -0.6
LIG1-215ENST00000597901 TP53RKQ96S44 253 aa11.31□□□□□ -0.6
LIG1-215ENST00000597901 EDA2RQ9HAV5 297 aa11.31□□□□□ -0.6
LIG1-215ENST00000597901 CEPT1Q9Y6K0 416 aa11.31□□□□□ -0.6
LIG1-215ENST00000597901 NBEAL2Q6ZNJ1 2754 aa11.31□□□□□ -0.6
LIG1-215ENST00000597901 A0A0B4J293 547 aa11.3□□□□□ -0.6
LIG1-215ENST00000597901 IGKV1-5P01602 117 aa11.3□□□□□ -0.6
LIG1-215ENST00000597901 CTSGP08311 255 aa11.3□□□□□ -0.6
LIG1-215ENST00000597901 TMBIM6P55061 237 aa11.3□□□□□ -0.6
LIG1-215ENST00000597901 MRPS10P82664 201 aaKnown RBP11.3□□□□□ -0.6
LIG1-215ENST00000597901 ERHP84090 104 aaKnown RBP11.3□□□□□ -0.6
LIG1-215ENST00000597901 PRCDQ00LT1 54 aa11.3□□□□□ -0.6
LIG1-215ENST00000597901 SSBP1Q04837 148 aaKnown RBP11.3□□□□□ -0.6
LIG1-215ENST00000597901 ANKRD55Q3KP44 614 aa11.3□□□□□ -0.6
LIG1-215ENST00000597901 SP6Q3SY56 376 aa11.3□□□□□ -0.6
LIG1-215ENST00000597901 SCGB2B2Q4G0G5 96 aa11.3□□□□□ -0.6
LIG1-215ENST00000597901 Q56UQ5 140 aa11.3□□□□□ -0.6
LIG1-215ENST00000597901 RBPMS2Q6ZRY4 209 aaKnown RBP11.3□□□□□ -0.6
LIG1-215ENST00000597901 SLC16A13Q7RTY0 426 aa11.3□□□□□ -0.6
LIG1-215ENST00000597901 UBAC2Q8NBM4 344 aa11.3□□□□□ -0.6
LIG1-215ENST00000597901 OR52B4Q8NGK2 314 aa11.3□□□□□ -0.6
LIG1-215ENST00000597901 RAB2BQ8WUD1 216 aa11.3□□□□□ -0.6
LIG1-215ENST00000597901 TMEM190Q8WZ59 177 aa11.3□□□□□ -0.6
LIG1-215ENST00000597901 WFDC10AQ9H1F0 79 aa11.3□□□□□ -0.6
LIG1-215ENST00000597901 HIPK2Q9H2X6 1198 aa11.3□□□□□ -0.6
LIG1-215ENST00000597901 SRD5A3Q9H8P0 318 aa11.3□□□□□ -0.6
LIG1-215ENST00000597901 COPZ2Q9P299 210 aa11.3□□□□□ -0.6
LIG1-215ENST00000597901 I3L2K1 104 aa11.29□□□□□ -0.6
LIG1-215ENST00000597901 K7EMT4 169 aa11.29□□□□□ -0.6
LIG1-215ENST00000597901 NDUFA4O00483 81 aa11.29□□□□□ -0.6
LIG1-215ENST00000597901 PPP5CP53041 499 aa11.29□□□□□ -0.6
LIG1-215ENST00000597901 MFAP4P55083 255 aa11.29□□□□□ -0.6
LIG1-215ENST00000597901 OR13C8Q8NGS7 320 aa11.29□□□□□ -0.6
LIG1-215ENST00000597901 MARCH1Q8TCQ1 289 aa11.29□□□□□ -0.6
LIG1-215ENST00000597901 DYNC2LI1Q8TCX1 351 aa11.29□□□□□ -0.6
LIG1-215ENST00000597901 ISOC1Q96CN7 298 aa11.29□□□□□ -0.6
LIG1-215ENST00000597901 MISP3Q96FF7 219 aa11.29□□□□□ -0.6
LIG1-215ENST00000597901 DIRAS2Q96HU8 199 aa11.29□□□□□ -0.6
LIG1-215ENST00000597901 C5orf66Q9H5L9 145 aa11.29□□□□□ -0.6
LIG1-215ENST00000597901 GAR1Q9NY12 217 aaKnown RBP11.29□□□□□ -0.6
LIG1-215ENST00000597901 STAB2Q8WWQ8 2551 aa11.28□□□□□ -0.6
LIG1-215ENST00000597901 ATG12O94817 140 aa11.28□□□□□ -0.6
LIG1-215ENST00000597901 MT-CO2P00403 227 aa11.28□□□□□ -0.6
LIG1-215ENST00000597901 CTSDP07339 412 aaPredicted RBP11.28□□□□□ -0.6
LIG1-215ENST00000597901 P0C879 139 aa11.28□□□□□ -0.6
LIG1-215ENST00000597901 CCDC71LQ8N9Z2 235 aa11.28□□□□□ -0.6
LIG1-215ENST00000597901 ZNF114Q8NC26 417 aa11.28□□□□□ -0.6
LIG1-215ENST00000597901 TXN2Q99757 166 aa11.28□□□□□ -0.6
LIG1-215ENST00000597901 BCL7BQ9BQE9 202 aa11.28□□□□□ -0.6
LIG1-215ENST00000597901 RTBDNQ9BSG5 229 aaPredicted RBP11.28□□□□□ -0.6
LIG1-215ENST00000597901 C20orf24Q9BUV8 137 aa11.28□□□□□ -0.6
LIG1-215ENST00000597901 DAZ1Q9NQZ3 744 aaKnown RBP11.28□□□□□ -0.6
LIG1-215ENST00000597901 IGHV3OR16-8A0A075B7F1 116 aa11.27□□□□□ -0.61
LIG1-215ENST00000597901 CTDSPLO15194 276 aa11.27□□□□□ -0.61
LIG1-215ENST00000597901 IGHV3-48P01763 117 aa11.27□□□□□ -0.61
LIG1-215ENST00000597901 UCP1P25874 307 aa11.27□□□□□ -0.61
LIG1-215ENST00000597901 FCGR2BP31994 310 aaPredicted RBP11.27□□□□□ -0.61
LIG1-215ENST00000597901 ETV6P41212 452 aa11.27□□□□□ -0.61
LIG1-215ENST00000597901 RPL5P46777 297 aaKnown RBP11.27□□□□□ -0.61
LIG1-215ENST00000597901 IL18Q14116 193 aa11.27□□□□□ -0.61
LIG1-215ENST00000597901 MEF2DQ14814 521 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 62.5 ms