RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 LPAR5Q9H1C0 372 aa5.16□□□□□ -1.58
VPS53-213ENST00000572334 RAB9BQ9NP90 201 aa5.16□□□□□ -1.58
VPS53-213ENST00000572334 KCNIP1Q9NZI2 227 aa5.16□□□□□ -1.58
VPS53-213ENST00000572334 PIPOXQ9P0Z9 390 aa5.16□□□□□ -1.58
VPS53-213ENST00000572334 OR1A1Q9P1Q5 309 aa5.16□□□□□ -1.58
VPS53-213ENST00000572334 GHRLQ9UBU3 117 aa5.16□□□□□ -1.58
VPS53-213ENST00000572334 RNF222A6NCQ9 220 aa5.15□□□□□ -1.59
VPS53-213ENST00000572334 CXorf65A6NEN9 183 aa5.15□□□□□ -1.59
VPS53-213ENST00000572334 OR5H14A6NHG9 310 aa5.15□□□□□ -1.59
VPS53-213ENST00000572334 GOSR2O14653 212 aa5.15□□□□□ -1.59
VPS53-213ENST00000572334 RAB29O14966 203 aa5.15□□□□□ -1.59
VPS53-213ENST00000572334 PPP1R2P9O14990 202 aa5.15□□□□□ -1.59
VPS53-213ENST00000572334 SOCS1O15524 211 aa5.15□□□□□ -1.59
VPS53-213ENST00000572334 SAP30O75446 220 aa5.15□□□□□ -1.59
VPS53-213ENST00000572334 RBMXL2O75526 392 aaKnown RBP5.15□□□□□ -1.59
VPS53-213ENST00000572334 SIX6O95475 246 aa5.15□□□□□ -1.59
VPS53-213ENST00000572334 LY86O95711 162 aa5.15□□□□□ -1.59
VPS53-213ENST00000572334 IGHV3-11P01762 117 aa5.15□□□□□ -1.59
VPS53-213ENST00000572334 IGKV1-16P04430 117 aa5.15□□□□□ -1.59
VPS53-213ENST00000572334 EIF4EP06730 217 aaKnown RBP5.15□□□□□ -1.59
VPS53-213ENST00000572334 HOXB5P09067 269 aa5.15□□□□□ -1.59
VPS53-213ENST00000572334 SCTP09683 121 aa5.15□□□□□ -1.59
VPS53-213ENST00000572334 CD3GP09693 182 aa5.15□□□□□ -1.59
VPS53-213ENST00000572334 UCHL1P09936 223 aa5.15□□□□□ -1.59
VPS53-213ENST00000572334 METTL15P1P0C7V9 234 aa5.15□□□□□ -1.59
VPS53-213ENST00000572334 HOXA5P20719 270 aa5.15□□□□□ -1.59
VPS53-213ENST00000572334 FGF7P21781 194 aa5.15□□□□□ -1.59
VPS53-213ENST00000572334 DDTP30046 118 aa5.15□□□□□ -1.59
VPS53-213ENST00000572334 MAS1LP35410 378 aa5.15□□□□□ -1.59
VPS53-213ENST00000572334 PCP4P48539 62 aa5.15□□□□□ -1.59
VPS53-213ENST00000572334 CAV2P51636 162 aa5.15□□□□□ -1.59
VPS53-213ENST00000572334 CCR6P51684 374 aa5.15□□□□□ -1.59
VPS53-213ENST00000572334 PLA2G7Q13093 441 aa5.15□□□□□ -1.59
VPS53-213ENST00000572334 PSG5Q15238 335 aa5.15□□□□□ -1.59
VPS53-213ENST00000572334 USF2Q15853 346 aaPredicted RBP5.15□□□□□ -1.59
VPS53-213ENST00000572334 AKIRIN2Q53H80 203 aa5.15□□□□□ -1.59
VPS53-213ENST00000572334 TMEM69Q5SWH9 247 aa5.15□□□□□ -1.59
VPS53-213ENST00000572334 TMEM88Q6PEY1 159 aa5.15□□□□□ -1.59
VPS53-213ENST00000572334 ATRAIDQ6UW56 229 aa5.15□□□□□ -1.59
VPS53-213ENST00000572334 CEACAM19Q7Z692 300 aa5.15□□□□□ -1.59
VPS53-213ENST00000572334 BAP18Q8IXM2 172 aa5.15□□□□□ -1.59
VPS53-213ENST00000572334 FAM89BQ8N5H3 189 aa5.15□□□□□ -1.59
VPS53-213ENST00000572334 ZNF383Q8NA42 475 aa5.15□□□□□ -1.59
VPS53-213ENST00000572334 LFNGQ8NES3 379 aa5.15□□□□□ -1.59
VPS53-213ENST00000572334 IL1F10Q8WWZ1 152 aa5.15□□□□□ -1.59
VPS53-213ENST00000572334 PTX4Q96A99 478 aa5.15□□□□□ -1.59
VPS53-213ENST00000572334 C5orf30Q96GV9 206 aa5.15□□□□□ -1.59
VPS53-213ENST00000572334 SCGB3A2Q96PL1 93 aa5.15□□□□□ -1.59
VPS53-213ENST00000572334 TM2D3Q9BRN9 247 aa5.15□□□□□ -1.59
VPS53-213ENST00000572334 TMEM59Q9BXS4 323 aa5.15□□□□□ -1.59
VPS53-213ENST00000572334 CST11Q9H112 138 aa5.15□□□□□ -1.59
VPS53-213ENST00000572334 EDA2RQ9HAV5 297 aa5.15□□□□□ -1.59
VPS53-213ENST00000572334 C19orf73Q9NVV2 129 aa5.15□□□□□ -1.59
VPS53-213ENST00000572334 AK3Q9UIJ7 227 aa5.15□□□□□ -1.59
VPS53-213ENST00000572334 FOXA2Q9Y261 457 aaPredicted RBP5.15□□□□□ -1.59
VPS53-213ENST00000572334 PLECQ15149 4684 aaKnown RBP5.15□□□□□ -1.59
VPS53-213ENST00000572334 ALMS1Q8TCU4 4167 aa5.14□□□□□ -1.59
VPS53-213ENST00000572334 KMT2AQ03164 3969 aa5.14□□□□□ -1.59
VPS53-213ENST00000572334 A0A0A6YYH2 397 aa5.14□□□□□ -1.59
VPS53-213ENST00000572334 A6NJ64 397 aa5.14□□□□□ -1.59
VPS53-213ENST00000572334 COLCA2A8K830 154 aa5.14□□□□□ -1.59
VPS53-213ENST00000572334 TRDCB7Z8K6 153 aa5.14□□□□□ -1.59
VPS53-213ENST00000572334 GPR31O00270 319 aa5.14□□□□□ -1.59
VPS53-213ENST00000572334 HMGB3O15347 200 aaKnown RBP5.14□□□□□ -1.59
VPS53-213ENST00000572334 SCGNO76038 276 aa5.14□□□□□ -1.59
VPS53-213ENST00000572334 RAB3DO95716 219 aa5.14□□□□□ -1.59
VPS53-213ENST00000572334 CA2P00918 260 aa5.14□□□□□ -1.59
VPS53-213ENST00000572334 IGLV1-51P01701 117 aa5.14□□□□□ -1.59
VPS53-213ENST00000572334 IGLV2-23P01705 113 aa5.14□□□□□ -1.59
VPS53-213ENST00000572334 HSPB1P04792 205 aaKnown RBP5.14□□□□□ -1.59
VPS53-213ENST00000572334 RLN1P04808 185 aa5.14□□□□□ -1.59
VPS53-213ENST00000572334 CRYGBP07316 175 aa5.14□□□□□ -1.59
VPS53-213ENST00000572334 HLA-GP17693 338 aa5.14□□□□□ -1.59
VPS53-213ENST00000572334 SRMP19623 302 aa5.14□□□□□ -1.59
VPS53-213ENST00000572334 RAB5AP20339 215 aa5.14□□□□□ -1.59
VPS53-213ENST00000572334 TAS2R31P59538 309 aa5.14□□□□□ -1.59
VPS53-213ENST00000572334 UBE2MP61081 183 aaKnown RBP5.14□□□□□ -1.59
VPS53-213ENST00000572334 HLA-DRB3P79483 266 aa5.14□□□□□ -1.59
VPS53-213ENST00000572334 MEF2DQ14814 521 aa5.14□□□□□ -1.59
VPS53-213ENST00000572334 ZNF562Q6V9R5 426 aa5.14□□□□□ -1.59
VPS53-213ENST00000572334 PPP1R27Q86WC6 154 aa5.14□□□□□ -1.59
VPS53-213ENST00000572334 TCTEX1D1Q8N7M0 179 aa5.14□□□□□ -1.59
VPS53-213ENST00000572334 HSD17B11Q8NBQ5 300 aa5.14□□□□□ -1.59
VPS53-213ENST00000572334 C2CD4CQ8TF44 421 aa5.14□□□□□ -1.59
VPS53-213ENST00000572334 NUDCD2Q8WVJ2 157 aa5.14□□□□□ -1.59
VPS53-213ENST00000572334 PCNPQ8WW12 178 aaKnown RBP5.14□□□□□ -1.59
VPS53-213ENST00000572334 MS4A10Q96PG2 267 aa5.14□□□□□ -1.59
VPS53-213ENST00000572334 NEU1Q99519 415 aa5.14□□□□□ -1.59
VPS53-213ENST00000572334 PHB2Q99623 299 aa5.14□□□□□ -1.59
VPS53-213ENST00000572334 ATG5Q9H1Y0 275 aa5.14□□□□□ -1.59
VPS53-213ENST00000572334 Q9N2K0 584 aa5.14□□□□□ -1.59
VPS53-213ENST00000572334 KIAA1456Q9P272 454 aa5.14□□□□□ -1.59
VPS53-213ENST00000572334 RNF150Q9ULK6 438 aa5.14□□□□□ -1.59
VPS53-213ENST00000572334 TNFSF18Q9UNG2 199 aa5.14□□□□□ -1.59
VPS53-213ENST00000572334 WASHC3Q9Y3C0 194 aa5.14□□□□□ -1.59
VPS53-213ENST00000572334 BIRC6Q9NR09 4857 aa5.14□□□□□ -1.59
VPS53-213ENST00000572334 FRAS1Q86XX4 4008 aa5.13□□□□□ -1.59
VPS53-213ENST00000572334 SRRM4A7MD48 611 aaKnown RBP5.13□□□□□ -1.59
VPS53-213ENST00000572334 ZNF705EA8MWA4 302 aaPredicted RBP5.13□□□□□ -1.59
VPS53-213ENST00000572334 A8MZ25 164 aa5.13□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 113.5 ms