RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 DBX1A6NMT0 343 aa7.86□□□□□ -1.15
USP3-216ENST00000559873 E7EUB6 86 aa7.86□□□□□ -1.15
USP3-216ENST00000559873 CORTO00230 105 aa7.86□□□□□ -1.15
USP3-216ENST00000559873 WRBO00258 174 aa7.86□□□□□ -1.15
USP3-216ENST00000559873 SSNA1O43805 119 aa7.86□□□□□ -1.15
USP3-216ENST00000559873 MED6O75586 246 aa7.86□□□□□ -1.15
USP3-216ENST00000559873 CDX1P47902 265 aaPredicted RBP7.86□□□□□ -1.15
USP3-216ENST00000559873 RHOGP84095 191 aa7.86□□□□□ -1.15
USP3-216ENST00000559873 WT1-ASQ06250 92 aa7.86□□□□□ -1.15
USP3-216ENST00000559873 TNFRSF9Q07011 255 aa7.86□□□□□ -1.15
USP3-216ENST00000559873 SRSF4Q08170 494 aaKnown RBP7.86□□□□□ -1.15
USP3-216ENST00000559873 NSUN5P1Q3KNT7 163 aa7.86□□□□□ -1.15
USP3-216ENST00000559873 PDLIM3Q53GG5 364 aaPredicted RBP7.86□□□□□ -1.15
USP3-216ENST00000559873 TCTEX1D4Q5JR98 221 aa7.86□□□□□ -1.15
USP3-216ENST00000559873 Q6ZRM9 215 aa7.86□□□□□ -1.15
USP3-216ENST00000559873 NOXA1Q86UR1 476 aa7.86□□□□□ -1.15
USP3-216ENST00000559873 OR2C3Q8N628 320 aa7.86□□□□□ -1.15
USP3-216ENST00000559873 UXS1Q8NBZ7 420 aa7.86□□□□□ -1.15
USP3-216ENST00000559873 ZNF114Q8NC26 417 aa7.86□□□□□ -1.15
USP3-216ENST00000559873 NECAP1Q8NC96 275 aa7.86□□□□□ -1.15
USP3-216ENST00000559873 OR10W1Q8NGF6 305 aa7.86□□□□□ -1.15
USP3-216ENST00000559873 OR1P1Q8NH06 330 aa7.86□□□□□ -1.15
USP3-216ENST00000559873 MYOZ3Q8TDC0 251 aa7.86□□□□□ -1.15
USP3-216ENST00000559873 C4orf3Q8WVX3 66 aa7.86□□□□□ -1.15
USP3-216ENST00000559873 MS4A10Q96PG2 267 aa7.86□□□□□ -1.15
USP3-216ENST00000559873 HEYLQ9NQ87 328 aaPredicted RBP7.86□□□□□ -1.15
USP3-216ENST00000559873 HSPB7Q9UBY9 170 aa7.86□□□□□ -1.15
USP3-216ENST00000559873 F11RQ9Y624 299 aaKnown RBP7.86□□□□□ -1.15
USP3-216ENST00000559873 DNHD1Q96M86 4753 aa7.86□□□□□ -1.15
USP3-216ENST00000559873 ADAP1O75689 374 aa7.85□□□□□ -1.15
USP3-216ENST00000559873 PF4P02776 101 aa7.85□□□□□ -1.15
USP3-216ENST00000559873 REG1AP05451 166 aa7.85□□□□□ -1.15
USP3-216ENST00000559873 LGALS1P09382 135 aaKnown RBP7.85□□□□□ -1.15
USP3-216ENST00000559873 HTR2BP41595 481 aa7.85□□□□□ -1.15
USP3-216ENST00000559873 ATP5G2Q06055 141 aa7.85□□□□□ -1.15
USP3-216ENST00000559873 IAH1Q2TAA2 248 aaPredicted RBP7.85□□□□□ -1.15
USP3-216ENST00000559873 LCNL1Q6ZST4 164 aa7.85□□□□□ -1.15
USP3-216ENST00000559873 ZNF491Q8N8L2 437 aa7.85□□□□□ -1.15
USP3-216ENST00000559873 DTD1Q8TEA8 209 aa7.85□□□□□ -1.15
USP3-216ENST00000559873 CXorf58Q96LI9 332 aa7.85□□□□□ -1.15
USP3-216ENST00000559873 CIB3Q96Q77 187 aaPredicted RBP7.85□□□□□ -1.15
USP3-216ENST00000559873 KLK15Q9H2R5 256 aa7.85□□□□□ -1.15
USP3-216ENST00000559873 IGLV11-55A0A075B6I3 123 aa7.84□□□□□ -1.15
USP3-216ENST00000559873 TRBV9A0A0B4J1U6 114 aa7.84□□□□□ -1.15
USP3-216ENST00000559873 C5orf51A6NDU8 294 aa7.84□□□□□ -1.15
USP3-216ENST00000559873 FAM25EA8MYX2 175 aa7.84□□□□□ -1.15
USP3-216ENST00000559873 PITX3O75364 302 aa7.84□□□□□ -1.15
USP3-216ENST00000559873 OR2J3O76001 311 aa7.84□□□□□ -1.15
USP3-216ENST00000559873 NXPH3O95157 252 aa7.84□□□□□ -1.15
USP3-216ENST00000559873 NKX2-1P43699 371 aaPredicted RBP7.84□□□□□ -1.15
USP3-216ENST00000559873 ATP5IP56385 69 aaPredicted RBP7.84□□□□□ -1.15
USP3-216ENST00000559873 RPP30P78346 268 aaKnown RBP7.84□□□□□ -1.15
USP3-216ENST00000559873 EXOSC2Q13868 293 aaKnown RBP7.84□□□□□ -1.15
USP3-216ENST00000559873 TATDN3Q17R31 274 aa7.84□□□□□ -1.15
USP3-216ENST00000559873 C15orf32Q32M92 178 aa7.84□□□□□ -1.15
USP3-216ENST00000559873 SPINK9Q5DT21 86 aa7.84□□□□□ -1.15
USP3-216ENST00000559873 GSG1LQ6UXU4 331 aa7.84□□□□□ -1.15
USP3-216ENST00000559873 SLC24A4Q8NFF2 622 aa7.84□□□□□ -1.15
USP3-216ENST00000559873 EEF1AKMT3Q96AZ1 226 aa7.84□□□□□ -1.15
USP3-216ENST00000559873 FBXL7Q9UJT9 491 aa7.84□□□□□ -1.15
USP3-216ENST00000559873 C7orf66A4D0T2 115 aa7.83□□□□□ -1.16
USP3-216ENST00000559873 SYNGR2O43760 224 aa7.83□□□□□ -1.16
USP3-216ENST00000559873 SCGB2A1O75556 95 aa7.83□□□□□ -1.16
USP3-216ENST00000559873 SCGB1D2O95969 90 aa7.83□□□□□ -1.16
USP3-216ENST00000559873 IGHV3-11P01762 117 aa7.83□□□□□ -1.16
USP3-216ENST00000559873 PRH1P02810 166 aa7.83□□□□□ -1.16
USP3-216ENST00000559873 NPY1RP25929 384 aa7.83□□□□□ -1.16
USP3-216ENST00000559873 RUNX1Q01196 453 aa7.83□□□□□ -1.16
USP3-216ENST00000559873 KLK9Q2XQG4 91 aa7.83□□□□□ -1.16
USP3-216ENST00000559873 SLC25A24Q6NUK1 477 aa7.83□□□□□ -1.16
USP3-216ENST00000559873 C8orf86Q6ZUL3 223 aa7.83□□□□□ -1.16
USP3-216ENST00000559873 ZBTB8BQ8NAP8 495 aaPredicted RBP7.83□□□□□ -1.16
USP3-216ENST00000559873 DPF1Q92782 380 aa7.83□□□□□ -1.16
USP3-216ENST00000559873 P2RX4Q99571 388 aa7.83□□□□□ -1.16
USP3-216ENST00000559873 RBKSQ9H477 322 aa7.83□□□□□ -1.16
USP3-216ENST00000559873 GNB4Q9HAV0 340 aa7.83□□□□□ -1.16
USP3-216ENST00000559873 RANGRFQ9HD47 186 aaPredicted RBP7.83□□□□□ -1.16
USP3-216ENST00000559873 GAR1Q9NY12 217 aaKnown RBP7.83□□□□□ -1.16
USP3-216ENST00000559873 GSKIPQ9P0R6 139 aa7.83□□□□□ -1.16
USP3-216ENST00000559873 KLK9Q9UKQ9 250 aa7.83□□□□□ -1.16
USP3-216ENST00000559873 U3KQ87 197 aa7.83□□□□□ -1.16
USP3-216ENST00000559873 WNK1Q9H4A3 2382 aa7.82□□□□□ -1.16
USP3-216ENST00000559873 TRBV7-1A0A0A6YYK4 115 aa7.82□□□□□ -1.16
USP3-216ENST00000559873 RPS10-NUDT3A0A1W2PQS6 291 aa7.82□□□□□ -1.16
USP3-216ENST00000559873 ADARB2-AS1A8MUL3 147 aa7.82□□□□□ -1.16
USP3-216ENST00000559873 LINC01619G3V211 115 aa7.82□□□□□ -1.16
USP3-216ENST00000559873 CCSO14618 274 aa7.82□□□□□ -1.16
USP3-216ENST00000559873 GOSR2O14653 212 aa7.82□□□□□ -1.16
USP3-216ENST00000559873 IFNA10P01566 189 aa7.82□□□□□ -1.16
USP3-216ENST00000559873 OR8U8P0C7N1 319 aa7.82□□□□□ -1.16
USP3-216ENST00000559873 SPNP16150 400 aa7.82□□□□□ -1.16
USP3-216ENST00000559873 PVALBP20472 110 aaPredicted RBP7.82□□□□□ -1.16
USP3-216ENST00000559873 MYCNOSP40205 109 aa7.82□□□□□ -1.16
USP3-216ENST00000559873 CYCSP99999 105 aaKnown RBP7.82□□□□□ -1.16
USP3-216ENST00000559873 OXA1LQ15070 435 aa7.82□□□□□ -1.16
USP3-216ENST00000559873 OR4D5Q8NGN0 318 aa7.82□□□□□ -1.16
USP3-216ENST00000559873 VN1R17PQ8TDU5 208 aa7.82□□□□□ -1.16
USP3-216ENST00000559873 MISP3Q96FF7 219 aa7.82□□□□□ -1.16
USP3-216ENST00000559873 C2orf50Q96LR7 162 aa7.82□□□□□ -1.16
USP3-216ENST00000559873 FANCD2OSQ96PS1 177 aa7.82□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 102 ms