RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 MRPL41Q8IXM3 137 aaKnown RBP7.54□□□□□ -1.2
CUX1-216ENST00000558469 TTC9CQ8N5M4 171 aa7.54□□□□□ -1.2
CUX1-216ENST00000558469 OR2C3Q8N628 320 aa7.54□□□□□ -1.2
CUX1-216ENST00000558469 PPP1R1CQ8WVI7 109 aa7.54□□□□□ -1.2
CUX1-216ENST00000558469 TMEM68Q96MH6 324 aa7.54□□□□□ -1.2
CUX1-216ENST00000558469 GON7Q9BXV9 100 aa7.54□□□□□ -1.2
CUX1-216ENST00000558469 ZNF355PQ9NSJ1 428 aa7.54□□□□□ -1.2
CUX1-216ENST00000558469 ZNF580Q9UK33 172 aa7.54□□□□□ -1.2
CUX1-216ENST00000558469 RCL1Q9Y2P8 373 aaKnown RBP7.54□□□□□ -1.2
CUX1-216ENST00000558469 PSMB11A5LHX3 300 aa7.53□□□□□ -1.2
CUX1-216ENST00000558469 NPIPB5A8MRT5 1133 aa7.53□□□□□ -1.2
CUX1-216ENST00000558469 INS-IGF2F8WCM5 200 aa7.53□□□□□ -1.2
CUX1-216ENST00000558469 L7N2F9 121 aa7.53□□□□□ -1.2
CUX1-216ENST00000558469 IFNA10P01566 189 aa7.53□□□□□ -1.2
CUX1-216ENST00000558469 RLN2P04090 185 aa7.53□□□□□ -1.2
CUX1-216ENST00000558469 DEFA4P12838 97 aa7.53□□□□□ -1.2
CUX1-216ENST00000558469 CTRB1P17538 263 aa7.53□□□□□ -1.2
CUX1-216ENST00000558469 PPIFP30405 207 aaKnown RBP7.53□□□□□ -1.2
CUX1-216ENST00000558469 RAP2BP61225 183 aa7.53□□□□□ -1.2
CUX1-216ENST00000558469 VAMP2P63027 116 aa7.53□□□□□ -1.2
CUX1-216ENST00000558469 SLC35B1P78383 322 aa7.53□□□□□ -1.2
CUX1-216ENST00000558469 CTRB2Q6GPI1 263 aa7.53□□□□□ -1.2
CUX1-216ENST00000558469 C10orf99Q6UWK7 81 aa7.53□□□□□ -1.2
CUX1-216ENST00000558469 ZNF329Q86UD4 541 aa7.53□□□□□ -1.2
CUX1-216ENST00000558469 FAM110DQ8TAY7 271 aaPredicted RBP7.53□□□□□ -1.2
CUX1-216ENST00000558469 ASB13Q8WXK3 278 aa7.53□□□□□ -1.2
CUX1-216ENST00000558469 CIB3Q96Q77 187 aaPredicted RBP7.53□□□□□ -1.2
CUX1-216ENST00000558469 WNT10AQ9GZT5 417 aa7.53□□□□□ -1.2
CUX1-216ENST00000558469 ZFP57Q9NU63 452 aa7.53□□□□□ -1.2
CUX1-216ENST00000558469 PSENENQ9NZ42 101 aa7.53□□□□□ -1.2
CUX1-216ENST00000558469 RNF114Q9Y508 228 aa7.53□□□□□ -1.2
CUX1-216ENST00000558469 CLPSL1A2RUU4 121 aa7.52□□□□□ -1.21
CUX1-216ENST00000558469 SOX15O60248 233 aa7.52□□□□□ -1.21
CUX1-216ENST00000558469 FBXO24O75426 580 aa7.52□□□□□ -1.21
CUX1-216ENST00000558469 DEDDO75618 318 aa7.52□□□□□ -1.21
CUX1-216ENST00000558469 CCNKO75909 580 aa7.52□□□□□ -1.21
CUX1-216ENST00000558469 MPC2O95563 127 aa7.52□□□□□ -1.21
CUX1-216ENST00000558469 PRH1P02810 166 aa7.52□□□□□ -1.21
CUX1-216ENST00000558469 CRYGCP07315 174 aa7.52□□□□□ -1.21
CUX1-216ENST00000558469 RNASE2P10153 161 aaKnown RBP7.52□□□□□ -1.21
CUX1-216ENST00000558469 PVALBP20472 110 aaPredicted RBP7.52□□□□□ -1.21
CUX1-216ENST00000558469 HTR2BP41595 481 aa7.52□□□□□ -1.21
CUX1-216ENST00000558469 SUB1P53999 127 aaKnown RBP eCLIP7.52□□□□□ -1.21
CUX1-216ENST00000558469 PAX9P55771 341 aa7.52□□□□□ -1.21
CUX1-216ENST00000558469 CFHR3Q02985 330 aa7.52□□□□□ -1.21
CUX1-216ENST00000558469 KRTAP24-1Q3LI83 254 aa7.52□□□□□ -1.21
CUX1-216ENST00000558469 SPANXN5Q5MJ07 72 aa7.52□□□□□ -1.21
CUX1-216ENST00000558469 KLHDC1Q8N7A1 406 aa7.52□□□□□ -1.21
CUX1-216ENST00000558469 OR5AU1Q8NGC0 362 aa7.52□□□□□ -1.21
CUX1-216ENST00000558469 OR2T35Q8NGX2 323 aa7.52□□□□□ -1.21
CUX1-216ENST00000558469 SMIM8Q96KF7 97 aa7.52□□□□□ -1.21
CUX1-216ENST00000558469 MS4A10Q96PG2 267 aa7.52□□□□□ -1.21
CUX1-216ENST00000558469 RAB40CQ96S21 281 aa7.52□□□□□ -1.21
CUX1-216ENST00000558469 P2RX4Q99571 388 aa7.52□□□□□ -1.21
CUX1-216ENST00000558469 RANGRFQ9HD47 186 aaPredicted RBP7.52□□□□□ -1.21
CUX1-216ENST00000558469 PAIP2BQ9ULR5 123 aaKnown RBP7.52□□□□□ -1.21
CUX1-216ENST00000558469 F11RQ9Y624 299 aaKnown RBP7.52□□□□□ -1.21
CUX1-216ENST00000558469 U3KQ87 197 aa7.52□□□□□ -1.21
CUX1-216ENST00000558469 TRAV14DV4A0A0A6YYC5 116 aa7.51□□□□□ -1.21
CUX1-216ENST00000558469 A0A1B0GUS0 222 aa7.51□□□□□ -1.21
CUX1-216ENST00000558469 H0YIZ8 118 aa7.51□□□□□ -1.21
CUX1-216ENST00000558469 H3BP45 60 aa7.51□□□□□ -1.21
CUX1-216ENST00000558469 LY86O95711 162 aa7.51□□□□□ -1.21
CUX1-216ENST00000558469 TMEM50AO95807 157 aa7.51□□□□□ -1.21
CUX1-216ENST00000558469 IGLV1-40P01703 118 aa7.51□□□□□ -1.21
CUX1-216ENST00000558469 IGHG4P01861 327 aa7.51□□□□□ -1.21
CUX1-216ENST00000558469 PET100P0DJ07 73 aa7.51□□□□□ -1.21
CUX1-216ENST00000558469 PF4V1P10720 104 aa7.51□□□□□ -1.21
CUX1-216ENST00000558469 MFAP2P55001 183 aa7.51□□□□□ -1.21
CUX1-216ENST00000558469 RPL23AP62750 156 aaKnown RBP7.51□□□□□ -1.21
CUX1-216ENST00000558469 RPP30P78346 268 aaKnown RBP7.51□□□□□ -1.21
CUX1-216ENST00000558469 FGL1Q08830 312 aa7.51□□□□□ -1.21
CUX1-216ENST00000558469 FOXL1Q12952 345 aa7.51□□□□□ -1.21
CUX1-216ENST00000558469 BSXQ3C1V8 233 aa7.51□□□□□ -1.21
CUX1-216ENST00000558469 C2orf83Q53S99 150 aa7.51□□□□□ -1.21
CUX1-216ENST00000558469 Q5BKY6 102 aa7.51□□□□□ -1.21
CUX1-216ENST00000558469 SLC25A24Q6NUK1 477 aa7.51□□□□□ -1.21
CUX1-216ENST00000558469 PRSS54Q6PEW0 395 aa7.51□□□□□ -1.21
CUX1-216ENST00000558469 TEX38Q6PEX7 206 aa7.51□□□□□ -1.21
CUX1-216ENST00000558469 TMEM65Q6PI78 240 aa7.51□□□□□ -1.21
CUX1-216ENST00000558469 AKAP14Q86UN6 197 aa7.51□□□□□ -1.21
CUX1-216ENST00000558469 ZNF114Q8NC26 417 aa7.51□□□□□ -1.21
CUX1-216ENST00000558469 SLC24A4Q8NFF2 622 aa7.51□□□□□ -1.21
CUX1-216ENST00000558469 OR1P1Q8NH06 330 aa7.51□□□□□ -1.21
CUX1-216ENST00000558469 THAP6Q8TBB0 222 aa7.51□□□□□ -1.21
CUX1-216ENST00000558469 ST6GAL2Q96JF0 529 aa7.51□□□□□ -1.21
CUX1-216ENST00000558469 RNF126Q9BV68 326 aa7.51□□□□□ -1.21
CUX1-216ENST00000558469 OR5AC2Q9NZP5 309 aa7.51□□□□□ -1.21
CUX1-216ENST00000558469 STRAPQ9Y3F4 350 aaKnown RBP7.51□□□□□ -1.21
CUX1-216ENST00000558469 TMEM89A2RUT3 159 aa7.5□□□□□ -1.21
CUX1-216ENST00000558469 E5RGE8 158 aa7.5□□□□□ -1.21
CUX1-216ENST00000558469 SMLR1H3BR10 107 aa7.5□□□□□ -1.21
CUX1-216ENST00000558469 CYB5BO43169 146 aa7.5□□□□□ -1.21
CUX1-216ENST00000558469 TRGV3P03979 118 aa7.5□□□□□ -1.21
CUX1-216ENST00000558469 HIST1H1BP16401 226 aaKnown RBP7.5□□□□□ -1.21
CUX1-216ENST00000558469 NPY1RP25929 384 aa7.5□□□□□ -1.21
CUX1-216ENST00000558469 CAV2P51636 162 aa7.5□□□□□ -1.21
CUX1-216ENST00000558469 PROK1P58294 105 aa7.5□□□□□ -1.21
CUX1-216ENST00000558469 TPPP2P59282 170 aa7.5□□□□□ -1.21
CUX1-216ENST00000558469 TAS2R30P59541 319 aa7.5□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 57 ms