RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 NPPCP23582 126 aa13.2□□□□□ -0.3
COL4A1-204ENST00000543140 GATA2P23769 480 aaPredicted RBP13.2□□□□□ -0.3
COL4A1-204ENST00000543140 COX7A1P24310 79 aa13.2□□□□□ -0.3
COL4A1-204ENST00000543140 GAMTQ14353 236 aa13.2□□□□□ -0.3
COL4A1-204ENST00000543140 FAM71F2Q6NXP2 309 aa13.2□□□□□ -0.3
COL4A1-204ENST00000543140 SPNS3Q6ZMD2 512 aa13.2□□□□□ -0.3
COL4A1-204ENST00000543140 CYP2G1PQ6ZSU1 146 aa13.2□□□□□ -0.3
COL4A1-204ENST00000543140 PPIAL4CA0A0B4J2A2 164 aa13.19□□□□□ -0.3
COL4A1-204ENST00000543140 CXorf65A6NEN9 183 aa13.19□□□□□ -0.3
COL4A1-204ENST00000543140 STAG3L2P0CL84 134 aa13.19□□□□□ -0.3
COL4A1-204ENST00000543140 STAG3L3P0CL85 134 aa13.19□□□□□ -0.3
COL4A1-204ENST00000543140 PPIAL4GP0DN37 164 aa13.19□□□□□ -0.3
COL4A1-204ENST00000543140 ZNF137PP52743 207 aa13.19□□□□□ -0.3
COL4A1-204ENST00000543140 C2orf83Q53S99 150 aa13.19□□□□□ -0.3
COL4A1-204ENST00000543140 TMEM167AQ8TBQ9 72 aa13.19□□□□□ -0.3
COL4A1-204ENST00000543140 KCNIP2Q9NS61 270 aa13.19□□□□□ -0.3
COL4A1-204ENST00000543140 CGB1A6NKQ9 187 aa13.19□□□□□ -0.3
COL4A1-204ENST00000543140 FOXH1O75593 365 aa13.19□□□□□ -0.3
COL4A1-204ENST00000543140 OR5T1Q8NG75 326 aa13.19□□□□□ -0.3
COL4A1-204ENST00000543140 MALSU1Q96EH3 234 aa13.19□□□□□ -0.3
COL4A1-204ENST00000543140 IGHV3-48P01763 117 aa13.18□□□□□ -0.3
COL4A1-204ENST00000543140 SOD3P08294 240 aa13.18□□□□□ -0.3
COL4A1-204ENST00000543140 LINC00869P0C866 280 aa13.18□□□□□ -0.3
COL4A1-204ENST00000543140 RPL29P47914 159 aaKnown RBP13.18□□□□□ -0.3
COL4A1-204ENST00000543140 RPL23P62829 140 aaKnown RBP13.18□□□□□ -0.3
COL4A1-204ENST00000543140 ERHP84090 104 aaKnown RBP13.18□□□□□ -0.3
COL4A1-204ENST00000543140 WT1-ASQ06250 92 aa13.18□□□□□ -0.3
COL4A1-204ENST00000543140 BSXQ3C1V8 233 aa13.18□□□□□ -0.3
COL4A1-204ENST00000543140 VSTM2AQ8TAG5 236 aa13.18□□□□□ -0.3
COL4A1-204ENST00000543140 CLDN34H7C241 214 aa13.18□□□□□ -0.3
COL4A1-204ENST00000543140 CXorf1O96002 111 aa13.18□□□□□ -0.3
COL4A1-204ENST00000543140 IL3RAP26951 378 aa13.18□□□□□ -0.3
COL4A1-204ENST00000543140 PRR20EP86478 221 aa13.18□□□□□ -0.3
COL4A1-204ENST00000543140 PRR20CP86479 221 aa13.18□□□□□ -0.3
COL4A1-204ENST00000543140 PRR20DP86480 221 aa13.18□□□□□ -0.3
COL4A1-204ENST00000543140 PRR20BP86481 221 aa13.18□□□□□ -0.3
COL4A1-204ENST00000543140 PRR20AP86496 221 aa13.18□□□□□ -0.3
COL4A1-204ENST00000543140 SLC16A13Q7RTY0 426 aa13.18□□□□□ -0.3
COL4A1-204ENST00000543140 TMEM144Q7Z5S9 345 aa13.18□□□□□ -0.3
COL4A1-204ENST00000543140 OR2T6Q8NHC8 308 aa13.18□□□□□ -0.3
COL4A1-204ENST00000543140 DERL1Q9BUN8 251 aa13.18□□□□□ -0.3
COL4A1-204ENST00000543140 RAB1BQ9H0U4 201 aa13.18□□□□□ -0.3
COL4A1-204ENST00000543140 REG1AP05451 166 aa13.17□□□□□ -0.3
COL4A1-204ENST00000543140 CNTFRP26992 372 aa13.17□□□□□ -0.3
COL4A1-204ENST00000543140 OR10J1P30954 320 aa13.17□□□□□ -0.3
COL4A1-204ENST00000543140 MC5RP33032 325 aa13.17□□□□□ -0.3
COL4A1-204ENST00000543140 RHOBP62745 196 aa13.17□□□□□ -0.3
COL4A1-204ENST00000543140 HLA-DRB5Q30154 266 aa13.17□□□□□ -0.3
COL4A1-204ENST00000543140 ACY3Q96HD9 319 aa13.17□□□□□ -0.3
COL4A1-204ENST00000543140 PCGF1Q9BSM1 259 aa13.17□□□□□ -0.3
COL4A1-204ENST00000543140 AURKAIP1Q9NWT8 199 aaPredicted RBP13.17□□□□□ -0.3
COL4A1-204ENST00000543140 ONECUT1Q9UBC0 465 aa13.17□□□□□ -0.3
COL4A1-204ENST00000543140 SLC45A2Q9UMX9 530 aa13.17□□□□□ -0.3
COL4A1-204ENST00000543140 NDUFB4O95168 129 aa13.17□□□□□ -0.3
COL4A1-204ENST00000543140 IGLV1-47P01700 117 aa13.17□□□□□ -0.3
COL4A1-204ENST00000543140 APELAP0DMC3 54 aa13.17□□□□□ -0.3
COL4A1-204ENST00000543140 PRRX1P54821 245 aa13.17□□□□□ -0.3
COL4A1-204ENST00000543140 GNB1P62873 340 aa13.17□□□□□ -0.3
COL4A1-204ENST00000543140 VMA21Q3ZAQ7 101 aa13.17□□□□□ -0.3
COL4A1-204ENST00000543140 FAM78BQ5VT40 261 aa13.17□□□□□ -0.3
COL4A1-204ENST00000543140 NECAP1Q8NC96 275 aa13.17□□□□□ -0.3
COL4A1-204ENST00000543140 OR8B3Q8NGG8 313 aa13.17□□□□□ -0.3
COL4A1-204ENST00000543140 OR4P4Q8NGL7 312 aa13.17□□□□□ -0.3
COL4A1-204ENST00000543140 OR8B2Q96RD0 313 aa13.17□□□□□ -0.3
COL4A1-204ENST00000543140 CLEC7AQ9BXN2 247 aa13.17□□□□□ -0.3
COL4A1-204ENST00000543140 AKAP6Q13023 2319 aa13.17□□□□□ -0.3
COL4A1-204ENST00000543140 PIEZO1Q92508 2521 aa13.16□□□□□ -0.3
COL4A1-204ENST00000543140 CD69Q07108 199 aa13.16□□□□□ -0.3
COL4A1-204ENST00000543140 TMEM249Q2WGJ8 235 aa13.16□□□□□ -0.3
COL4A1-204ENST00000543140 MIR17HGQ75NE6 70 aa13.16□□□□□ -0.3
COL4A1-204ENST00000543140 C16orf82Q7Z2V1 217 aa13.16□□□□□ -0.3
COL4A1-204ENST00000543140 CBLN4Q9NTU7 201 aa13.16□□□□□ -0.3
COL4A1-204ENST00000543140 INSIG2Q9Y5U4 225 aa13.16□□□□□ -0.3
COL4A1-204ENST00000543140 C5orf52A6NGY3 159 aa13.16□□□□□ -0.3
COL4A1-204ENST00000543140 FNDC10F2Z333 226 aa13.16□□□□□ -0.3
COL4A1-204ENST00000543140 MEOX2P50222 304 aa13.16□□□□□ -0.3
COL4A1-204ENST00000543140 OR4A5Q8NH83 315 aa13.16□□□□□ -0.3
COL4A1-204ENST00000543140 NANPQ8TBE9 248 aa13.16□□□□□ -0.3
COL4A1-204ENST00000543140 TMEM242Q9NWH2 141 aa13.16□□□□□ -0.3
COL4A1-204ENST00000543140 BUB1B-PAK6H3BSN5 160 aa13.15□□□□□ -0.3
COL4A1-204ENST00000543140 DLL1O00548 723 aa13.15□□□□□ -0.3
COL4A1-204ENST00000543140 GCHFRP30047 84 aa13.15□□□□□ -0.3
COL4A1-204ENST00000543140 YTHDF2Q9Y5A9 579 aaKnown RBP13.15□□□□□ -0.3
COL4A1-204ENST00000543140 MED13LQ71F56 2210 aa13.15□□□□□ -0.3
COL4A1-204ENST00000543140 C22orf46C9J442 243 aa13.15□□□□□ -0.3
COL4A1-204ENST00000543140 PDE6DO43924 150 aa13.15□□□□□ -0.3
COL4A1-204ENST00000543140 SSBP2P81877 361 aaPredicted RBP13.15□□□□□ -0.3
COL4A1-204ENST00000543140 FABP9Q0Z7S8 132 aa13.15□□□□□ -0.3
COL4A1-204ENST00000543140 MRGPRG-AS1Q2M3A8 158 aa13.15□□□□□ -0.3
COL4A1-204ENST00000543140 PNKDQ8N490 385 aa13.15□□□□□ -0.3
COL4A1-204ENST00000543140 IGHV1-3A0A0C4DH29 117 aa13.14□□□□□ -0.31
COL4A1-204ENST00000543140 A0A1W2PN81 502 aa13.14□□□□□ -0.31
COL4A1-204ENST00000543140 A0A1W2PPI3 338 aa13.14□□□□□ -0.31
COL4A1-204ENST00000543140 PGPEP1LA6NFU8 196 aa13.14□□□□□ -0.31
COL4A1-204ENST00000543140 CHRNA7P36544 502 aa13.14□□□□□ -0.31
COL4A1-204ENST00000543140 RND2P52198 227 aa13.14□□□□□ -0.31
COL4A1-204ENST00000543140 ATP5IP56385 69 aaPredicted RBP13.14□□□□□ -0.31
COL4A1-204ENST00000543140 C1QL4Q86Z23 238 aa13.14□□□□□ -0.31
COL4A1-204ENST00000543140 FAM210BQ96KR6 192 aa13.14□□□□□ -0.31
COL4A1-204ENST00000543140 MIOXQ9UGB7 285 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 66.1 ms