RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 CBLN1P23435 193 aa8.01□□□□□ -1.13
CD44-227ENST00000528086 UCP1P25874 307 aa8.01□□□□□ -1.13
CD44-227ENST00000528086 TAS2R19P59542 299 aa8.01□□□□□ -1.13
CD44-227ENST00000528086 DCTN2Q13561 401 aaKnown RBP8.01□□□□□ -1.13
CD44-227ENST00000528086 ZNF79Q15937 498 aa8.01□□□□□ -1.13
CD44-227ENST00000528086 SPINK9Q5DT21 86 aa8.01□□□□□ -1.13
CD44-227ENST00000528086 PVRIGQ6DKI7 326 aa8.01□□□□□ -1.13
CD44-227ENST00000528086 OR5B3Q8NH48 314 aa8.01□□□□□ -1.13
CD44-227ENST00000528086 VN1R17PQ8TDU5 208 aa8.01□□□□□ -1.13
CD44-227ENST00000528086 GLYATL2Q8WU03 294 aa8.01□□□□□ -1.13
CD44-227ENST00000528086 LSM10Q969L4 123 aaKnown RBP8.01□□□□□ -1.13
CD44-227ENST00000528086 TRIM63Q969Q1 353 aa8.01□□□□□ -1.13
CD44-227ENST00000528086 WDR89Q96FK6 387 aaPredicted RBP8.01□□□□□ -1.13
CD44-227ENST00000528086 ZNF486Q96H40 463 aaPredicted RBP8.01□□□□□ -1.13
CD44-227ENST00000528086 WWC2-AS2Q96NR7 200 aa8.01□□□□□ -1.13
CD44-227ENST00000528086 TM2D3Q9BRN9 247 aa8.01□□□□□ -1.13
CD44-227ENST00000528086 HINT2Q9BX68 163 aa8.01□□□□□ -1.13
CD44-227ENST00000528086 ZNF436Q9C0F3 470 aaPredicted RBP8.01□□□□□ -1.13
CD44-227ENST00000528086 PRNDQ9UKY0 176 aa8.01□□□□□ -1.13
CD44-227ENST00000528086 GPR132Q9UNW8 380 aa8.01□□□□□ -1.13
CD44-227ENST00000528086 V9GYH0 126 aa8.01□□□□□ -1.13
CD44-227ENST00000528086 TRBV7-1A0A0A6YYK4 115 aa8□□□□□ -1.13
CD44-227ENST00000528086 C3orf85A0A1B0GTC6 90 aa8□□□□□ -1.13
CD44-227ENST00000528086 IGHV3-48P01763 117 aa8□□□□□ -1.13
CD44-227ENST00000528086 IFNA6P05013 189 aa8□□□□□ -1.13
CD44-227ENST00000528086 CTSDP07339 412 aaPredicted RBP8□□□□□ -1.13
CD44-227ENST00000528086 CTSGP08311 255 aa8□□□□□ -1.13
CD44-227ENST00000528086 PGAM2P15259 253 aa8□□□□□ -1.13
CD44-227ENST00000528086 HSPE1P61604 102 aaKnown RBP8□□□□□ -1.13
CD44-227ENST00000528086 PRCDQ00LT1 54 aa8□□□□□ -1.13
CD44-227ENST00000528086 SSBP1Q04837 148 aaKnown RBP8□□□□□ -1.13
CD44-227ENST00000528086 SCGB2B2Q4G0G5 96 aa8□□□□□ -1.13
CD44-227ENST00000528086 FAM209BQ5JX69 171 aa8□□□□□ -1.13
CD44-227ENST00000528086 THOC7Q6I9Y2 204 aaKnown RBP8□□□□□ -1.13
CD44-227ENST00000528086 SLC25A24Q6NUK1 477 aa8□□□□□ -1.13
CD44-227ENST00000528086 TMEM61Q8N0U2 210 aa8□□□□□ -1.13
CD44-227ENST00000528086 Q8N402 240 aa8□□□□□ -1.13
CD44-227ENST00000528086 MRPL36Q9P0J6 103 aaKnown RBP8□□□□□ -1.13
CD44-227ENST00000528086 IGHV3OR16-8A0A075B7F1 116 aa7.99□□□□□ -1.13
CD44-227ENST00000528086 RBMY1BA6NDE4 496 aaKnown RBP7.99□□□□□ -1.13
CD44-227ENST00000528086 RBMY1EA6NEQ0 496 aaKnown RBP7.99□□□□□ -1.13
CD44-227ENST00000528086 OR2T8A6NH00 312 aa7.99□□□□□ -1.13
CD44-227ENST00000528086 ST8SIA3O43173 380 aa7.99□□□□□ -1.13
CD44-227ENST00000528086 TGOLN2O43493 480 aa7.99□□□□□ -1.13
CD44-227ENST00000528086 SNAPC5O75971 98 aa7.99□□□□□ -1.13
CD44-227ENST00000528086 DHFRP00374 187 aa7.99□□□□□ -1.13
CD44-227ENST00000528086 OR5AC1P0C628 307 aa7.99□□□□□ -1.13
CD44-227ENST00000528086 RBMY1DP0C7P1 496 aaKnown RBP7.99□□□□□ -1.13
CD44-227ENST00000528086 MRPS10P82664 201 aaKnown RBP7.99□□□□□ -1.13
CD44-227ENST00000528086 IL18Q14116 193 aa7.99□□□□□ -1.13
CD44-227ENST00000528086 TATDN3Q17R31 274 aa7.99□□□□□ -1.13
CD44-227ENST00000528086 AARDQ4LEZ3 155 aa7.99□□□□□ -1.13
CD44-227ENST00000528086 H2BFWTQ7Z2G1 175 aa7.99□□□□□ -1.13
CD44-227ENST00000528086 UXS1Q8NBZ7 420 aa7.99□□□□□ -1.13
CD44-227ENST00000528086 ZNF114Q8NC26 417 aa7.99□□□□□ -1.13
CD44-227ENST00000528086 OR51S1Q8NGJ8 323 aa7.99□□□□□ -1.13
CD44-227ENST00000528086 OR1P1Q8NH06 330 aa7.99□□□□□ -1.13
CD44-227ENST00000528086 TMEM190Q8WZ59 177 aa7.99□□□□□ -1.13
CD44-227ENST00000528086 CXorf58Q96LI9 332 aa7.99□□□□□ -1.13
CD44-227ENST00000528086 C6orf62Q9GZU0 229 aaPredicted RBP7.99□□□□□ -1.13
CD44-227ENST00000528086 PRR13Q9NZ81 148 aa7.99□□□□□ -1.13
CD44-227ENST00000528086 PEMTQ9UBM1 199 aa7.99□□□□□ -1.13
CD44-227ENST00000528086 INS-IGF2F8WCM5 200 aa7.98□□□□□ -1.13
CD44-227ENST00000528086 CDS2O95674 445 aa7.98□□□□□ -1.13
CD44-227ENST00000528086 SUPT4H1P63272 117 aaKnown RBP7.98□□□□□ -1.13
CD44-227ENST00000528086 KLF9Q13886 244 aaPredicted RBP7.98□□□□□ -1.13
CD44-227ENST00000528086 HAGHQ16775 308 aa7.98□□□□□ -1.13
CD44-227ENST00000528086 BSXQ3C1V8 233 aa7.98□□□□□ -1.13
CD44-227ENST00000528086 LCE2DQ5TA82 110 aaPredicted RBP7.98□□□□□ -1.13
CD44-227ENST00000528086 LCN12Q6JVE5 192 aa7.98□□□□□ -1.13
CD44-227ENST00000528086 HSD17B13Q7Z5P4 300 aaPredicted RBP7.98□□□□□ -1.13
CD44-227ENST00000528086 SELENOHQ8IZQ5 122 aaKnown RBP7.98□□□□□ -1.13
CD44-227ENST00000528086 OR2K2Q8NGT1 345 aa7.98□□□□□ -1.13
CD44-227ENST00000528086 MCFD2Q8NI22 146 aa7.98□□□□□ -1.13
CD44-227ENST00000528086 C15orf40Q8WUR7 153 aa7.98□□□□□ -1.13
CD44-227ENST00000528086 TMEM170AQ8WVE7 144 aa7.98□□□□□ -1.13
CD44-227ENST00000528086 RCHY1Q96PM5 261 aa7.98□□□□□ -1.13
CD44-227ENST00000528086 CITED4Q96RK1 184 aa7.98□□□□□ -1.13
CD44-227ENST00000528086 TSC22D3Q99576 134 aa7.98□□□□□ -1.13
CD44-227ENST00000528086 TMEM222Q9H0R3 208 aa7.98□□□□□ -1.13
CD44-227ENST00000528086 FNDC4Q9H6D8 234 aaPredicted RBP7.98□□□□□ -1.13
CD44-227ENST00000528086 NAA60Q9H7X0 242 aa7.98□□□□□ -1.13
CD44-227ENST00000528086 PLEKHA3Q9HB20 300 aa7.98□□□□□ -1.13
CD44-227ENST00000528086 SLC2A8Q9NY64 477 aa7.98□□□□□ -1.13
CD44-227ENST00000528086 C21orf62Q9NYP8 219 aa7.98□□□□□ -1.13
CD44-227ENST00000528086 ZNF320A2RRD8 509 aa7.97□□□□□ -1.13
CD44-227ENST00000528086 CRYM-AS1A6NIL9 109 aa7.97□□□□□ -1.13
CD44-227ENST00000528086 MT-CO2P00403 227 aa7.97□□□□□ -1.13
CD44-227ENST00000528086 AKAIN1P0CW23 69 aa7.97□□□□□ -1.13
CD44-227ENST00000528086 RNASE2P10153 161 aaKnown RBP7.97□□□□□ -1.13
CD44-227ENST00000528086 FCGR2BP31994 310 aaPredicted RBP7.97□□□□□ -1.13
CD44-227ENST00000528086 ETV6P41212 452 aa7.97□□□□□ -1.13
CD44-227ENST00000528086 MEF2DQ14814 521 aa7.97□□□□□ -1.13
CD44-227ENST00000528086 MLANAQ16655 118 aa7.97□□□□□ -1.13
CD44-227ENST00000528086 PLET1Q6UQ28 207 aa7.97□□□□□ -1.13
CD44-227ENST00000528086 BTNL8Q6UX41 500 aa7.97□□□□□ -1.13
CD44-227ENST00000528086 CCDC190Q86UF4 302 aa7.97□□□□□ -1.13
CD44-227ENST00000528086 DEFB125Q8N687 156 aa7.97□□□□□ -1.13
CD44-227ENST00000528086 OR4A16Q8NH70 328 aa7.97□□□□□ -1.13
CD44-227ENST00000528086 ZFAND1Q8TCF1 268 aa7.97□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms