RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 CYB5BO43169 146 aa11.68□□□□□ -0.54
NUP54-213ENST00000513352 CTRB1P17538 263 aa11.68□□□□□ -0.54
NUP54-213ENST00000513352 SNCAP37840 140 aa11.68□□□□□ -0.54
NUP54-213ENST00000513352 RAB9AP51151 201 aa11.68□□□□□ -0.54
NUP54-213ENST00000513352 CTRB2Q6GPI1 263 aa11.68□□□□□ -0.54
NUP54-213ENST00000513352 ZBTB8BQ8NAP8 495 aaPredicted RBP11.68□□□□□ -0.54
NUP54-213ENST00000513352 CITED1Q99966 193 aa11.68□□□□□ -0.54
NUP54-213ENST00000513352 MAGT1Q9H0U3 335 aa11.68□□□□□ -0.54
NUP54-213ENST00000513352 RBKSQ9H477 322 aa11.68□□□□□ -0.54
NUP54-213ENST00000513352 HSPB7Q9UBY9 170 aa11.68□□□□□ -0.54
NUP54-213ENST00000513352 TSSC4Q9Y5U2 329 aaPredicted RBP11.68□□□□□ -0.54
NUP54-213ENST00000513352 C7orf66A4D0T2 115 aa11.67□□□□□ -0.54
NUP54-213ENST00000513352 MED6O75586 246 aa11.67□□□□□ -0.54
NUP54-213ENST00000513352 OR2J3O76001 311 aa11.67□□□□□ -0.54
NUP54-213ENST00000513352 SIX6O95475 246 aa11.67□□□□□ -0.54
NUP54-213ENST00000513352 IAPPP10997 89 aa11.67□□□□□ -0.54
NUP54-213ENST00000513352 NKX2-1P43699 371 aaPredicted RBP11.67□□□□□ -0.54
NUP54-213ENST00000513352 RHOGP84095 191 aa11.67□□□□□ -0.54
NUP54-213ENST00000513352 CD83Q01151 205 aa11.67□□□□□ -0.54
NUP54-213ENST00000513352 C2orf68Q2NKX9 166 aa11.67□□□□□ -0.54
NUP54-213ENST00000513352 AARDQ4LEZ3 155 aa11.67□□□□□ -0.54
NUP54-213ENST00000513352 C11orf87Q6NUJ2 197 aa11.67□□□□□ -0.54
NUP54-213ENST00000513352 SLC25A24Q6NUK1 477 aa11.67□□□□□ -0.54
NUP54-213ENST00000513352 OR2C3Q8N628 320 aa11.67□□□□□ -0.54
NUP54-213ENST00000513352 KLHL30-AS1Q8NEE0 82 aa11.67□□□□□ -0.54
NUP54-213ENST00000513352 DTD1Q8TEA8 209 aa11.67□□□□□ -0.54
NUP54-213ENST00000513352 OR5B12Q96R08 314 aa11.67□□□□□ -0.54
NUP54-213ENST00000513352 HIPK2Q9H2X6 1198 aa11.67□□□□□ -0.54
NUP54-213ENST00000513352 SLA2Q9H6Q3 261 aa11.67□□□□□ -0.54
NUP54-213ENST00000513352 MGAT4CQ9UBM8 478 aa11.67□□□□□ -0.54
NUP54-213ENST00000513352 STAB1Q9NY15 2570 aa11.66□□□□□ -0.54
NUP54-213ENST00000513352 FAM90A26D6RGX4 464 aa11.66□□□□□ -0.54
NUP54-213ENST00000513352 PITX3O75364 302 aa11.66□□□□□ -0.54
NUP54-213ENST00000513352 IGHV3-11P01762 117 aa11.66□□□□□ -0.54
NUP54-213ENST00000513352 CRYGCP07315 174 aa11.66□□□□□ -0.54
NUP54-213ENST00000513352 HIST1H1BP16401 226 aaKnown RBP11.66□□□□□ -0.54
NUP54-213ENST00000513352 RPL23AP62750 156 aaKnown RBP11.66□□□□□ -0.54
NUP54-213ENST00000513352 NDUFA11Q86Y39 141 aa11.66□□□□□ -0.54
NUP54-213ENST00000513352 OR4D5Q8NGN0 318 aa11.66□□□□□ -0.54
NUP54-213ENST00000513352 MISP3Q96FF7 219 aa11.66□□□□□ -0.54
NUP54-213ENST00000513352 C2orf50Q96LR7 162 aa11.66□□□□□ -0.54
NUP54-213ENST00000513352 P2RX4Q99571 388 aa11.66□□□□□ -0.54
NUP54-213ENST00000513352 MED28Q9H204 178 aa11.66□□□□□ -0.54
NUP54-213ENST00000513352 FBXL7Q9UJT9 491 aa11.66□□□□□ -0.54
NUP54-213ENST00000513352 F11RQ9Y624 299 aaKnown RBP11.66□□□□□ -0.54
NUP54-213ENST00000513352 TENM1Q9UKZ4 2725 aa11.66□□□□□ -0.54
NUP54-213ENST00000513352 IFNA10P01566 189 aa11.65□□□□□ -0.54
NUP54-213ENST00000513352 SUB1P53999 127 aaKnown RBP eCLIP11.65□□□□□ -0.54
NUP54-213ENST00000513352 S100A10P60903 97 aa11.65□□□□□ -0.54
NUP54-213ENST00000513352 PDLIM3Q53GG5 364 aaPredicted RBP11.65□□□□□ -0.54
NUP54-213ENST00000513352 C18orf65Q6ZTR6 163 aa11.65□□□□□ -0.54
NUP54-213ENST00000513352 RNF152Q8N8N0 203 aa11.65□□□□□ -0.54
NUP54-213ENST00000513352 ZFP57Q9NU63 452 aa11.65□□□□□ -0.54
NUP54-213ENST00000513352 PAIP2BQ9ULR5 123 aaKnown RBP11.65□□□□□ -0.54
NUP54-213ENST00000513352 A0A0G2JLM5 398 aa11.64□□□□□ -0.55
NUP54-213ENST00000513352 FAM223BA6NKX1 122 aa11.64□□□□□ -0.55
NUP54-213ENST00000513352 SYNGR2O43760 224 aa11.64□□□□□ -0.55
NUP54-213ENST00000513352 SSSCA1O60232 199 aa11.64□□□□□ -0.55
NUP54-213ENST00000513352 HTR2BP41595 481 aa11.64□□□□□ -0.55
NUP54-213ENST00000513352 POLR2GP62487 172 aaKnown RBP eCLIP11.64□□□□□ -0.55
NUP54-213ENST00000513352 ATP5G2Q06055 141 aa11.64□□□□□ -0.55
NUP54-213ENST00000513352 FAM223AQ8IWN6 122 aa11.64□□□□□ -0.55
NUP54-213ENST00000513352 ZNF491Q8N8L2 437 aa11.64□□□□□ -0.55
NUP54-213ENST00000513352 NECAP1Q8NC96 275 aa11.64□□□□□ -0.55
NUP54-213ENST00000513352 SLC24A4Q8NFF2 622 aa11.64□□□□□ -0.55
NUP54-213ENST00000513352 OR1L6Q8NGR2 347 aa11.64□□□□□ -0.55
NUP54-213ENST00000513352 OR1P1Q8NH06 330 aa11.64□□□□□ -0.55
NUP54-213ENST00000513352 PINX1Q96BK5 328 aaKnown RBP11.64□□□□□ -0.55
NUP54-213ENST00000513352 GNB4Q9HAV0 340 aa11.64□□□□□ -0.55
NUP54-213ENST00000513352 THYN1Q9P016 225 aa11.64□□□□□ -0.55
NUP54-213ENST00000513352 LSM5Q9Y4Y9 91 aaKnown RBP11.64□□□□□ -0.55
NUP54-213ENST00000513352 S4R3C0 116 aa11.64□□□□□ -0.55
NUP54-213ENST00000513352 IGLV11-55A0A075B6I3 123 aa11.63□□□□□ -0.55
NUP54-213ENST00000513352 IGHV3-21A0A0B4J1V1 117 aa11.63□□□□□ -0.55
NUP54-213ENST00000513352 NDUFB8O95169 186 aa11.63□□□□□ -0.55
NUP54-213ENST00000513352 MBPP02686 304 aaPredicted RBP11.63□□□□□ -0.55
NUP54-213ENST00000513352 RNASE2P10153 161 aaKnown RBP11.63□□□□□ -0.55
NUP54-213ENST00000513352 NPY1RP25929 384 aa11.63□□□□□ -0.55
NUP54-213ENST00000513352 EXOSC2Q13868 293 aaKnown RBP11.63□□□□□ -0.55
NUP54-213ENST00000513352 C15orf32Q32M92 178 aa11.63□□□□□ -0.55
NUP54-213ENST00000513352 USMG5Q96IX5 58 aa11.63□□□□□ -0.55
NUP54-213ENST00000513352 UBE2E2Q96LR5 201 aa11.63□□□□□ -0.55
NUP54-213ENST00000513352 FANCD2OSQ96PS1 177 aa11.63□□□□□ -0.55
NUP54-213ENST00000513352 CIB3Q96Q77 187 aaPredicted RBP11.63□□□□□ -0.55
NUP54-213ENST00000513352 TRBV9A0A0B4J1U6 114 aa11.62□□□□□ -0.55
NUP54-213ENST00000513352 INS-IGF2F8WCM5 200 aa11.62□□□□□ -0.55
NUP54-213ENST00000513352 L7N2F9 121 aa11.62□□□□□ -0.55
NUP54-213ENST00000513352 IGHV3-23P01764 117 aa11.62□□□□□ -0.55
NUP54-213ENST00000513352 CDX1P47902 265 aaPredicted RBP11.62□□□□□ -0.55
NUP54-213ENST00000513352 MFAP2P55001 183 aa11.62□□□□□ -0.55
NUP54-213ENST00000513352 VAMP2P63027 116 aa11.62□□□□□ -0.55
NUP54-213ENST00000513352 ID3Q02535 119 aa11.62□□□□□ -0.55
NUP54-213ENST00000513352 FCN2Q15485 313 aa11.62□□□□□ -0.55
NUP54-213ENST00000513352 C8orf86Q6ZUL3 223 aa11.62□□□□□ -0.55
NUP54-213ENST00000513352 ZNF114Q8NC26 417 aa11.62□□□□□ -0.55
NUP54-213ENST00000513352 SPATA3Q8NHX4 192 aa11.62□□□□□ -0.55
NUP54-213ENST00000513352 MYOZ3Q8TDC0 251 aa11.62□□□□□ -0.55
NUP54-213ENST00000513352 C4orf3Q8WVX3 66 aa11.62□□□□□ -0.55
NUP54-213ENST00000513352 RCL1Q9Y2P8 373 aaKnown RBP11.62□□□□□ -0.55
NUP54-213ENST00000513352 DMRT1Q9Y5R6 373 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 70.5 ms