RNA–Protein interactions for RNA: ENST00000462730.5

HDAC6-213, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 1,999 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-213ENST00000462730 VWC2Q2TAL6 325 aa11.72□□□□□ -0.53
HDAC6-213ENST00000462730 KHDC3LQ587J8 217 aa11.72□□□□□ -0.53
HDAC6-213ENST00000462730 SLC35E3Q7Z769 313 aa11.72□□□□□ -0.53
HDAC6-213ENST00000462730 OR4C13Q8NGP0 309 aa11.72□□□□□ -0.53
HDAC6-213ENST00000462730 TIMM9Q9Y5J7 89 aa11.72□□□□□ -0.53
HDAC6-213ENST00000462730 URGCP-MRPS24S4R325 110 aa11.72□□□□□ -0.53
HDAC6-213ENST00000462730 LRRK2Q5S007 2527 aa11.71□□□□□ -0.53
HDAC6-213ENST00000462730 VPS13CQ709C8 3753 aa11.71□□□□□ -0.53
HDAC6-213ENST00000462730 COX6B1P14854 86 aa11.71□□□□□ -0.53
HDAC6-213ENST00000462730 ELLP55199 621 aaPredicted RBP11.71□□□□□ -0.53
HDAC6-213ENST00000462730 PNKDQ8N490 385 aa11.71□□□□□ -0.53
HDAC6-213ENST00000462730 BEND2Q8NDZ0 799 aa11.71□□□□□ -0.53
HDAC6-213ENST00000462730 TMEM170AQ8WVE7 144 aa11.71□□□□□ -0.53
HDAC6-213ENST00000462730 BPESC1Q9GZL8 116 aa11.71□□□□□ -0.53
HDAC6-213ENST00000462730 VSIRQ9H7M9 311 aa11.71□□□□□ -0.53
HDAC6-213ENST00000462730 DOK5Q9P104 306 aa11.71□□□□□ -0.53
HDAC6-213ENST00000462730 ZNF257Q9Y2Q1 563 aa11.71□□□□□ -0.53
HDAC6-213ENST00000462730 TEX50A0A1B0GTY4 177 aa11.7□□□□□ -0.54
HDAC6-213ENST00000462730 OPN1MWP04001 364 aa11.7□□□□□ -0.54
HDAC6-213ENST00000462730 OPN1MW2P0DN77 364 aa11.7□□□□□ -0.54
HDAC6-213ENST00000462730 OPN1MW3P0DN78 364 aa11.7□□□□□ -0.54
HDAC6-213ENST00000462730 NDUFA6P56556 154 aa11.7□□□□□ -0.54
HDAC6-213ENST00000462730 PKIAP61925 76 aa11.7□□□□□ -0.54
HDAC6-213ENST00000462730 RAB11AP62491 216 aa11.7□□□□□ -0.54
HDAC6-213ENST00000462730 SERF2P84101 59 aa11.7□□□□□ -0.54
HDAC6-213ENST00000462730 PRCDQ00LT1 54 aa11.7□□□□□ -0.54
HDAC6-213ENST00000462730 Q8N7P7 452 aa11.7□□□□□ -0.54
HDAC6-213ENST00000462730 PLEKHA3Q9HB20 300 aa11.7□□□□□ -0.54
HDAC6-213ENST00000462730 RPRMQ9NS64 109 aa11.7□□□□□ -0.54
HDAC6-213ENST00000462730 TMEM242Q9NWH2 141 aa11.7□□□□□ -0.54
HDAC6-213ENST00000462730 FKBP11Q9NYL4 201 aa11.7□□□□□ -0.54
HDAC6-213ENST00000462730 AMMECR1Q9Y4X0 333 aaPredicted RBP11.7□□□□□ -0.54
HDAC6-213ENST00000462730 CHD6Q8TD26 2715 aa11.7□□□□□ -0.54
HDAC6-213ENST00000462730 FAM208BQ5VWN6 2430 aa11.7□□□□□ -0.54
HDAC6-213ENST00000462730 TGIF2-C20orf24A0A0A6YYL0 155 aa11.7□□□□□ -0.54
HDAC6-213ENST00000462730 IGHV3-72A0A0B4J1Y9 119 aa11.7□□□□□ -0.54
HDAC6-213ENST00000462730 TRAV1-1A0A0B4J248 108 aa11.7□□□□□ -0.54
HDAC6-213ENST00000462730 LOC102723971A0A1B0GUV8 181 aa11.7□□□□□ -0.54
HDAC6-213ENST00000462730 SMCO3A2RU48 225 aa11.7□□□□□ -0.54
HDAC6-213ENST00000462730 TSTD3H0UI37 97 aa11.7□□□□□ -0.54
HDAC6-213ENST00000462730 BUB1B-PAK6H3BSN5 160 aa11.7□□□□□ -0.54
HDAC6-213ENST00000462730 PPP1R2P9O14990 202 aa11.7□□□□□ -0.54
HDAC6-213ENST00000462730 ENSAO43768 121 aaKnown RBP11.7□□□□□ -0.54
HDAC6-213ENST00000462730 NPY1RP25929 384 aa11.7□□□□□ -0.54
HDAC6-213ENST00000462730 MC5RP33032 325 aa11.7□□□□□ -0.54
HDAC6-213ENST00000462730 TAS2R60P59551 318 aa11.7□□□□□ -0.54
HDAC6-213ENST00000462730 ARF6P62330 175 aa11.7□□□□□ -0.54
HDAC6-213ENST00000462730 TMEM41BQ5BJD5 291 aa11.7□□□□□ -0.54
HDAC6-213ENST00000462730 REC114Q7Z4M0 266 aa11.7□□□□□ -0.54
HDAC6-213ENST00000462730 SLC24A4Q8NFF2 622 aa11.7□□□□□ -0.54
HDAC6-213ENST00000462730 OR4P4Q8NGL7 312 aa11.7□□□□□ -0.54
HDAC6-213ENST00000462730 CA2P00918 260 aa11.69□□□□□ -0.54
HDAC6-213ENST00000462730 IGLV2-23P01705 113 aa11.69□□□□□ -0.54
HDAC6-213ENST00000462730 PNRC1Q12796 327 aaPredicted RBP11.69□□□□□ -0.54
HDAC6-213ENST00000462730 PYY3Q5JQD4 70 aa11.69□□□□□ -0.54
HDAC6-213ENST00000462730 OR4A5Q8NH83 315 aa11.69□□□□□ -0.54
HDAC6-213ENST00000462730 OR5R1Q8NH85 324 aa11.69□□□□□ -0.54
HDAC6-213ENST00000462730 TMEM167AQ8TBQ9 72 aa11.69□□□□□ -0.54
HDAC6-213ENST00000462730 PRSS46E5RG02 174 aa11.68□□□□□ -0.54
HDAC6-213ENST00000462730 M0R1W7 72 aa11.68□□□□□ -0.54
HDAC6-213ENST00000462730 CYB5BO43169 146 aa11.68□□□□□ -0.54
HDAC6-213ENST00000462730 HIST1H2BKO60814 126 aa11.68□□□□□ -0.54
HDAC6-213ENST00000462730 HIST1H2BJP06899 126 aa11.68□□□□□ -0.54
HDAC6-213ENST00000462730 USF1P22415 310 aaPredicted RBP11.68□□□□□ -0.54
HDAC6-213ENST00000462730 HIST1H2BOP23527 126 aa11.68□□□□□ -0.54
HDAC6-213ENST00000462730 HIST1H2BBP33778 126 aa11.68□□□□□ -0.54
HDAC6-213ENST00000462730 HIST1H2BDP58876 126 aa11.68□□□□□ -0.54
HDAC6-213ENST00000462730 HIST1H2BCP62807 126 aa11.68□□□□□ -0.54
HDAC6-213ENST00000462730 RPL8P62917 257 aaKnown RBP11.68□□□□□ -0.54
HDAC6-213ENST00000462730 HIST2H2BEQ16778 126 aa11.68□□□□□ -0.54
HDAC6-213ENST00000462730 VMA21Q3ZAQ7 101 aa11.68□□□□□ -0.54
HDAC6-213ENST00000462730 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.68□□□□□ -0.54
HDAC6-213ENST00000462730 CENPVQ7Z7K6 275 aaPredicted RBP11.68□□□□□ -0.54
HDAC6-213ENST00000462730 MOB3BQ86TA1 216 aa11.68□□□□□ -0.54
HDAC6-213ENST00000462730 OR5B3Q8NH48 314 aa11.68□□□□□ -0.54
HDAC6-213ENST00000462730 VSTM2AQ8TAG5 236 aa11.68□□□□□ -0.54
HDAC6-213ENST00000462730 HIST1H2BHQ93079 126 aa11.68□□□□□ -0.54
HDAC6-213ENST00000462730 HIST1H2BNQ99877 126 aa11.68□□□□□ -0.54
HDAC6-213ENST00000462730 HIST1H2BMQ99879 126 aa11.68□□□□□ -0.54
HDAC6-213ENST00000462730 NPCDR1Q9BY65 106 aa11.68□□□□□ -0.54
HDAC6-213ENST00000462730 GNG13Q9P2W3 67 aa11.68□□□□□ -0.54
HDAC6-213ENST00000462730 IGHV1-3A0A0C4DH29 117 aa11.68□□□□□ -0.54
HDAC6-213ENST00000462730 MDKP21741 143 aaPredicted RBP11.68□□□□□ -0.54
HDAC6-213ENST00000462730 CD1BP29016 333 aa11.68□□□□□ -0.54
HDAC6-213ENST00000462730 PDLIM4P50479 330 aa11.68□□□□□ -0.54
HDAC6-213ENST00000462730 ZNF726P1Q15940 193 aa11.68□□□□□ -0.54
HDAC6-213ENST00000462730 FAM90A2PQ658T7 463 aa11.68□□□□□ -0.54
HDAC6-213ENST00000462730 ACSM6Q6P461 480 aa11.68□□□□□ -0.54
HDAC6-213ENST00000462730 ZNF709Q8N972 641 aa11.68□□□□□ -0.54
HDAC6-213ENST00000462730 RPEQ96AT9 228 aa11.68□□□□□ -0.54
HDAC6-213ENST00000462730 RITA1Q96K30 269 aa11.68□□□□□ -0.54
HDAC6-213ENST00000462730 COMMD5Q9GZQ3 224 aa11.68□□□□□ -0.54
HDAC6-213ENST00000462730 WDR83OSQ9Y284 106 aa11.68□□□□□ -0.54
HDAC6-213ENST00000462730 INSIG2Q9Y5U4 225 aa11.68□□□□□ -0.54
HDAC6-213ENST00000462730 CRYBG3Q68DQ2 2970 aa11.68□□□□□ -0.54
HDAC6-213ENST00000462730 SLC25A17O43808 307 aa11.67□□□□□ -0.54
HDAC6-213ENST00000462730 FFAR4Q5NUL3 377 aa11.67□□□□□ -0.54
HDAC6-213ENST00000462730 SPNS3Q6ZMD2 512 aa11.67□□□□□ -0.54
HDAC6-213ENST00000462730 SSX7Q7RTT5 188 aa11.67□□□□□ -0.54
HDAC6-213ENST00000462730 OR1L8Q8NGR8 309 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 74.8 ms